Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100288562 Sequence: fasta or formatted (675aa) NCBI GI: 239743602
Description:

PREDICTED: hypothetical protein XP_002342903

Referenced in:

RNases and RNA Stability

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         74           3
 C cysteine            3.6         24           2
 D aspartate           3.3         22           1
 E glutamate           5.8         39           2
 F phenylalanine       3.0         20           2
 G glycine             6.7         45           2
 H histidine           2.1         14           1
 I isoleucine          2.4         16           2
 K lysine              5.6         38           2
 L leucine             8.4         57           2
 M methionine          1.5         10           1
 N asparagine          1.9         13           1
 P proline             7.7         52           2
 Q glutamine           5.0         34           1
 R arginine            7.6         51           2
 S serine              8.7         59           3
 T threonine           5.2         35           2
 V valine              6.4         43           2
 W tryptophan          1.0          7           1
 Y tyrosine            3.3         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342903 
LOC100288527          1.000   PREDICTED: hypothetical protein XP_002342902 
LOC100288500          1.000   PREDICTED: hypothetical protein XP_002342901 
LOC100288470          1.000   PREDICTED: hypothetical protein XP_002342900 
REXO1L1               0.999   exonuclease GOR 
LOC100289448          0.811   PREDICTED: hypothetical protein XP_002342913, parti...
REXO1                 0.494   transcription elongation factor B polypeptide 3 bin...
LOC81691              0.062   exonuclease NEF-sp isoform 2 
LOC81691              0.062   exonuclease NEF-sp isoform 1 
AEN                   0.042   interferon stimulated exonuclease gene 20kDa-like 1...
ISG20                 0.036   interferon stimulated exonuclease 
ISG20L2               0.031   interferon stimulated exonuclease gene 20kDa-like 2 ...
REXO4                 0.023   XPMC2 prevents mitotic catastrophe 2 homolog 
PAN2                  0.017   PAN2 polyA specific ribonuclease subunit homolog is...
PAN2                  0.017   PAN2 polyA specific ribonuclease subunit homolog is...
BTBD12                0.014   BTB (POZ) domain containing 12 
LOC100292122          0.011   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.011   PREDICTED: hypothetical protein XP_002344191 
SRRM2                 0.011   splicing coactivator subunit SRm300 
NACA                  0.011   nascent polypeptide-associated complex alpha subuni...
MLL2                  0.009   myeloid/lymphoid or mixed-lineage leukemia 2 
UNCX                  0.009   UNC homeobox 
ARHGEF11              0.008   Rho guanine nucleotide exchange factor (GEF) 11 isof...
ARHGEF11              0.008   Rho guanine nucleotide exchange factor (GEF) 11 isofo...
KLF13                 0.007   Kruppel-like factor 13 
OBSCN                 0.007   obscurin, cytoskeletal calmodulin and titin-interac...
MLXIPL                0.007   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.007   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.007   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.007   Williams Beuren syndrome chromosome region 14 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press