Guide to the Human Genome
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Name: JPH1 Sequence: fasta or formatted (661aa) NCBI GI: 21735575
Description:

junctophilin 1

Referenced in:

Muscle

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         60           5
 C cysteine            1.2          8           1
 D aspartate           4.5         30           2
 E glutamate           6.1         40           2
 F phenylalanine       2.4         16           1
 G glycine            10.9         72           2
 H histidine           3.3         22           2
 I isoleucine          2.9         19           1
 K lysine              7.9         52           3
 L leucine             4.7         31           2
 M methionine          1.8         12           1
 N asparagine          3.9         26           2
 P proline             6.4         42           2
 Q glutamine           3.5         23           1
 R arginine            5.9         39           2
 S serine             10.1         67           3
 T threonine           4.5         30           3
 V valine              5.6         37           2
 W tryptophan          1.7         11           1
 Y tyrosine            3.6         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   junctophilin 1 
JPH2                  0.490   junctophilin 2 isoform 1 
JPH3                  0.467   junctophilin 3 
JPH4                  0.308   junctophilin 4 
JPH4                  0.308   junctophilin 4 
JPH2                  0.170   junctophilin 2 isoform 2 
RSPH10B2              0.042   radial spoke head 10 homolog B2 
RSPH10B               0.042   radial spoke head 10 homolog B 
ALS2CL                0.040   ALS2 C-terminal like isoform 1 
MORN3                 0.035   MORN repeat containing 3 
RSPH1                 0.034   testis-specific gene A2 
MORN1                 0.031   MORN repeat containing 1 
ALS2                  0.028   alsin isoform 1 
MORN4                 0.028   MORN repeat containing 4 
MORN4                 0.028   MORN repeat containing 4 
NEFH                  0.017   neurofilament, heavy polypeptide 200kDa 
XIRP1                 0.016   xin actin-binding repeat containing 1 
CHD7                  0.016   chromodomain helicase DNA binding protein 7 
LOC100292655          0.015   PREDICTED: similar to armadillo repeat containing, ...
MORN2                 0.014   MORN repeat containing 2 
FLJ37078              0.014   hypothetical protein LOC222183 
BASP1                 0.013   brain abundant, membrane attached signal protein 1 [...
BUD13                 0.013   BUD13 homolog isoform 1 
AFF1                  0.013   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
TEX2                  0.011   testis expressed sequence 2 
SHANK1                0.011   SH3 and multiple ankyrin repeat domains 1 
KRT9                  0.011   keratin 9 
KCNN3                 0.011   small conductance calcium-activated potassium chann...
FAM98B                0.010   family with sequence similarity 98, member B isofor...
SFRS4                 0.010   splicing factor, arginine/serine-rich 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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