Guide to the Human Genome
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Name: LOC197350 Sequence: fasta or formatted (432aa) NCBI GI: 239756464
Description:

PREDICTED: hypothetical protein LOC197350

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Other entries for this name:
alt prot [432aa] PREDICTED: hypothetical protein LOC197350
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         44           2
 C cysteine            4.4         19           2
 D aspartate           4.2         18           2
 E glutamate           6.2         27           2
 F phenylalanine       2.1          9           1
 G glycine            11.3         49           2
 H histidine           0.9          4           1
 I isoleucine          1.4          6           1
 K lysine              1.2          5           1
 L leucine            14.4         62           3
 M methionine          0.9          4           1
 N asparagine          0.7          3           1
 P proline             7.6         33           2
 Q glutamine           6.0         26           2
 R arginine            9.5         41           3
 S serine              6.2         27           2
 T threonine           3.9         17           2
 V valine              6.0         26           1
 W tryptophan          1.4          6           1
 Y tyrosine            1.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC197350 
LOC197350             0.999   PREDICTED: hypothetical protein LOC197350 
CASP14                0.173   caspase 14 precursor 
CASP2                 0.058   caspase 2 isoform 1 preproprotein 
CASP8                 0.054   caspase 8 isoform G precursor 
CASP8                 0.054   caspase 8 isoform C precursor 
CASP8                 0.054   caspase 8 isoform C precursor 
CASP8                 0.054   caspase 8 isoform B precursor 
CASP8                 0.054   caspase 8 isoform A precursor 
CASP6                 0.054   caspase 6 isoform alpha preproprotein 
CASP9                 0.048   caspase 9 isoform alpha preproprotein 
CASP6                 0.047   caspase 6 isoform beta 
CASP7                 0.047   caspase 7 isoform delta 
CASP7                 0.047   caspase 7 isoform alpha 
CASP7                 0.047   caspase 7 isoform alpha precursor 
CASP3                 0.044   caspase 3 preproprotein 
CASP3                 0.044   caspase 3 preproprotein 
CASP10                0.035   caspase 10 isoform d preproprotein 
CASP10                0.035   caspase 10 isoform a preproprotein 
CASP10                0.028   caspase 10 isoform b preproprotein 
CASP1                 0.026   caspase 1 isoform delta 
CASP1                 0.023   caspase 1 isoform gamma precursor 
CASP1                 0.023   caspase 1 isoform alpha precursor 
CASP1                 0.023   caspase 1 isoform beta precursor 
CASP4                 0.022   caspase 4 isoform gamma precursor 
CASP4                 0.022   caspase 4 isoform alpha precursor 
CASP5                 0.020   caspase 5 isoform f precursor 
CASP5                 0.020   caspase 5 isoform c 
CASP5                 0.020   caspase 5 isoform b precursor 
CASP5                 0.020   caspase 5 isoform a precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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