Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM131C Sequence: fasta or formatted (280aa) NCBI GI: 157502173
Description:

hypothetical protein LOC348487

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         22           2
 C cysteine            2.9          8           2
 D aspartate           6.8         19           2
 E glutamate           7.1         20           3
 F phenylalanine       2.5          7           1
 G glycine             7.1         20           2
 H histidine           2.5          7           1
 I isoleucine          2.9          8           1
 K lysine              2.1          6           1
 L leucine             7.9         22           1
 M methionine          1.8          5           1
 N asparagine          2.5          7           1
 P proline            11.8         33           2
 Q glutamine           5.7         16           1
 R arginine            4.3         12           3
 S serine             11.8         33           2
 T threonine           4.3         12           2
 V valine              3.9         11           2
 W tryptophan          2.5          7           1
 Y tyrosine            1.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC348487 
FAM131B               0.164   hypothetical protein LOC9715 isoform b 
FAM131B               0.164   hypothetical protein LOC9715 isoform a 
FAM131A               0.139   hypothetical protein LOC131408 
COL3A1                0.032   collagen type III alpha 1 preproprotein 
FMN1                  0.028   formin 1 
SLC16A2               0.028   solute carrier family 16, member 2 
LOC100134663          0.026   PREDICTED: hypothetical protein, partial 
COL18A1               0.026   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.026   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.026   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
RFX1                  0.025   regulatory factor X1 
COL4A6                0.025   type IV alpha 6 collagen isoform A precursor 
TAOK2                 0.025   TAO kinase 2 isoform 2 
COL4A6                0.025   type IV alpha 6 collagen isoform B precursor 
COL5A1                0.025   alpha 1 type V collagen preproprotein 
ZNF341                0.023   zinc finger protein 341 
NFATC4                0.023   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.023   nuclear factor of activated T-cells, cytoplasmic, ca...
SFPQ                  0.023   splicing factor proline/glutamine rich (polypyrimidin...
C19orf55              0.023   hypothetical protein LOC148137 
PPP1R13L              0.021   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.021   protein phosphatase 1, regulatory subunit 13 like [H...
CPSF6                 0.021   cleavage and polyadenylation specific factor 6, 68 ...
ACAN                  0.021   aggrecan isoform 2 precursor 
ACAN                  0.021   aggrecan isoform 1 precursor 
COL17A1               0.021   alpha 1 type XVII collagen 
FMNL1                 0.021   formin-like 1 
SON                   0.021   SON DNA-binding protein isoform F 
SON                   0.021   SON DNA-binding protein isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press