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Search of human proteins with 239743843
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743843 PREDICTED: hypothetical protein XP_002342968 [Homo
sapiens]
(139 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743843 PREDICTED: hypothetical protein XP_002342968 [Homo ... 288 1e-78
gi|239743812 PREDICTED: similar to hCG1644292 [Homo sapiens] 288 1e-78
gi|239758143 PREDICTED: similar to hCG1644292 [Homo sapiens] 225 8e-60
gi|239757619 PREDICTED: similar to hCG1644292 [Homo sapiens] 204 2e-53
gi|239752110 PREDICTED: hypothetical protein XP_002348113 [Homo ... 204 2e-53
gi|239749791 PREDICTED: similar to hCG1644292 [Homo sapiens] 171 2e-43
gi|239755296 PREDICTED: similar to hCG1644292 [Homo sapiens] 169 5e-43
gi|222537750 ankyrin repeat domain 30B [Homo sapiens] 164 2e-41
gi|115495445 ankyrin repeat domain 30A [Homo sapiens] 142 9e-35
gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens] 33 0.057
gi|32490557 poly(A) polymerase alpha [Homo sapiens] 33 0.098
gi|194097418 hypothetical protein LOC338094 [Homo sapiens] 32 0.22
gi|239756223 PREDICTED: ankyrin repeat domain-containing protein... 30 0.48
gi|169209369 PREDICTED: similar to Putative ankyrin repeat domai... 30 0.48
gi|239745040 PREDICTED: ankyrin repeat domain-containing protein... 30 0.48
gi|58761506 sarcoma antigen NY-SAR-48 isoform b [Homo sapiens] 30 0.83
gi|58761504 sarcoma antigen NY-SAR-48 isoform a [Homo sapiens] 30 0.83
gi|39812378 RAN binding protein 9 [Homo sapiens] 29 1.4
gi|192807334 arsenate resistance protein 2 isoform d [Homo sapiens] 29 1.4
gi|58331218 arsenate resistance protein 2 isoform a [Homo sapiens] 29 1.4
gi|11321642 bromodomain containing protein 1 [Homo sapiens] 28 1.8
gi|221316624 dystonin isoform 4 [Homo sapiens] 28 3.1
gi|221316622 dystonin isoform 3 [Homo sapiens] 28 3.1
gi|221316618 dystonin isoform 2 [Homo sapiens] 28 3.1
gi|34577047 dystonin isoform 1 [Homo sapiens] 28 3.1
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 28 3.1
gi|87162461 fragile X mental retardation 2 [Homo sapiens] 28 3.1
gi|16554449 zonadhesin isoform 3 [Homo sapiens] 28 3.1
gi|27881494 zonadhesin isoform 6 [Homo sapiens] 28 3.1
gi|38176300 nestin [Homo sapiens] 27 4.1
>gi|239743843 PREDICTED: hypothetical protein XP_002342968 [Homo
sapiens]
Length = 139
Score = 288 bits (737), Expect = 1e-78
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP
Sbjct: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHMVRCLSE 120
QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHMVRCLSE
Sbjct: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHMVRCLSE 120
Query: 121 LCRVYWHFGFPSGNSVVWE 139
LCRVYWHFGFPSGNSVVWE
Sbjct: 121 LCRVYWHFGFPSGNSVVWE 139
>gi|239743812 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 139
Score = 288 bits (737), Expect = 1e-78
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP
Sbjct: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHMVRCLSE 120
QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHMVRCLSE
Sbjct: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHMVRCLSE 120
Query: 121 LCRVYWHFGFPSGNSVVWE 139
LCRVYWHFGFPSGNSVVWE
Sbjct: 121 LCRVYWHFGFPSGNSVVWE 139
>gi|239758143 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 115
Score = 225 bits (574), Expect = 8e-60
Identities = 112/114 (98%), Positives = 112/114 (98%)
Query: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
MAESLVERT EAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP
Sbjct: 1 MAESLVERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHM 114
QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHM
Sbjct: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQVHM 114
>gi|239757619 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 118
Score = 204 bits (518), Expect = 2e-53
Identities = 100/105 (95%), Positives = 102/105 (97%)
Query: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGK E+SA ETPRKITRPVKETSEKFAWP
Sbjct: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWP 60
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTK 105
QERPTKTTWEEKETSVKTECVAGVTSNK EVLEEGT+KMITCPTK
Sbjct: 61 QERPTKTTWEEKETSVKTECVAGVTSNKIEVLEEGTAKMITCPTK 105
Score = 26.2 bits (56), Expect = 9.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 74 TSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQK 110
TS + +C+ S KTE T + IT P K+ +K
Sbjct: 20 TSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEK 56
>gi|239752110 PREDICTED: hypothetical protein XP_002348113 [Homo
sapiens]
Length = 118
Score = 204 bits (518), Expect = 2e-53
Identities = 100/105 (95%), Positives = 102/105 (97%)
Query: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGK E+SA ETPRKITRPVKETSEKFAWP
Sbjct: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWP 60
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTK 105
QERPTKTTWEEKETSVKTECVAGVTSNK EVLEEGT+KMITCPTK
Sbjct: 61 QERPTKTTWEEKETSVKTECVAGVTSNKIEVLEEGTAKMITCPTK 105
Score = 26.2 bits (56), Expect = 9.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 74 TSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQK 110
TS + +C+ S KTE T + IT P K+ +K
Sbjct: 20 TSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEK 56
>gi|239749791 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 671
Score = 171 bits (433), Expect = 2e-43
Identities = 84/111 (75%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
MAESLVE+ PDEAAPLVEGT+D++QCLGK SGK E+SA ETP+KI R KETSEKFAWP
Sbjct: 552 MAESLVEKPPDEAAPLVEGTADKIQCLGKATSGKFEQSAEETPKKIMRTAKETSEKFAWP 611
Query: 61 -QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQK 110
+ERP K TWEEKETSVKTECVAGV NKTEVLE+GTS+M+TCPTK+ K
Sbjct: 612 AKERPRKITWEEKETSVKTECVAGVIPNKTEVLEKGTSEMLTCPTKETSTK 662
>gi|239755296 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 671
Score = 169 bits (429), Expect = 5e-43
Identities = 83/111 (74%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
MAESLVE+ PDEAAPLVEGT+D++QCLGK SGK E+SA ETP+KI R KETS+KFAWP
Sbjct: 552 MAESLVEKPPDEAAPLVEGTADKIQCLGKATSGKFEQSAEETPKKIMRTAKETSKKFAWP 611
Query: 61 -QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQK 110
+ERP K TWEEKETSVKTECVAGV NKTEVLE+GTS+M+TCPTK+ K
Sbjct: 612 AKERPRKITWEEKETSVKTECVAGVIPNKTEVLEKGTSEMLTCPTKETSTK 662
>gi|222537750 ankyrin repeat domain 30B [Homo sapiens]
Length = 1392
Score = 164 bits (415), Expect = 2e-41
Identities = 82/110 (74%), Positives = 91/110 (82%), Gaps = 1/110 (0%)
Query: 2 AESLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP- 60
AESL+E+TPDEAA LVEGTS ++QCLGK SGK E+S ETPRKI RP KETSEKF+WP
Sbjct: 295 AESLLEKTPDEAARLVEGTSAKIQCLGKATSGKFEQSTEETPRKILRPTKETSEKFSWPA 354
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQK 110
+ER K TWEEKETSVKTECVAGVT NKTEVLE+GTS MI CPTK+ K
Sbjct: 355 KERSRKITWEEKETSVKTECVAGVTPNKTEVLEKGTSNMIACPTKETSTK 404
>gi|115495445 ankyrin repeat domain 30A [Homo sapiens]
Length = 1341
Score = 142 bits (358), Expect = 9e-35
Identities = 78/144 (54%), Positives = 88/144 (61%), Gaps = 35/144 (24%)
Query: 2 AESLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWPQ 61
AESLVE+TPDEAA LVEGTSD++QCL K SGK E+SA ETPR+IT P KETSEKF WP
Sbjct: 261 AESLVEKTPDEAASLVEGTSDKIQCLEKATSGKFEQSAEETPREITSPAKETSEKFTWPA 320
Query: 62 E-----------------------------------RPTKTTWEEKETSVKTECVAGVTS 86
+ RP K WE+KET VKT CVA VTS
Sbjct: 321 KGRPRKIAWEKKEDTPREIMSPAKETSEKFTWAAKGRPRKIAWEKKETPVKTGCVARVTS 380
Query: 87 NKTEVLEEGTSKMITCPTKKQLQK 110
NKT+VLE+G SKMI CPTK+ K
Sbjct: 381 NKTKVLEKGRSKMIACPTKESSTK 404
>gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens]
Length = 840
Score = 33.5 bits (75), Expect = 0.057
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 8 RTPDEAAPLVEGTSDEVQCLGKTISGKI----EESAGETPRKITRPVKETSEKFAWPQER 63
++P + P E + +E++ GK+ G I EE AGE KE+S+ + +E+
Sbjct: 278 KSPQPSVP--EQSDNELEQAGKSKRGSILQLCEEIAGEIESDNVEVKKESSQMESVKEEK 335
Query: 64 PTKTTWEE----------KETSVKTECVAGVTSNKTE 90
PT+ EE KET+ +C S KT+
Sbjct: 336 PTEIKLEETSVERQILHQKETNQDVQCNRFFPSRKTK 372
>gi|32490557 poly(A) polymerase alpha [Homo sapiens]
Length = 745
Score = 32.7 bits (73), Expect = 0.098
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 38 SAGETPRKITRP---VKETSEKFAWPQERPTKTTWEEKETSVKTECVAGVTSNKTEVLEE 94
++G KI P VK TS +E P KT EE ETS C+A +KTE E+
Sbjct: 634 TSGNAATKIPTPIVGVKRTSSPHK--EESPKKTKTEEDETSEDANCLALSGHDKTEAKEQ 691
>gi|194097418 hypothetical protein LOC338094 [Homo sapiens]
Length = 585
Score = 31.6 bits (70), Expect = 0.22
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 34 KIEESAGETPRKITRPVKETSEKFAWP--------QERPTKTTWEEKETSVKTECVAGVT 85
K+ E G P+++T PV+ + + AWP ER + T W+ + E + V
Sbjct: 230 KMHELVGGVPQRVTFPVRSSMVRAAWPHFSWLLSQSERYSLTLWQAASDPMSVEDLLYVR 289
Query: 86 SN 87
N
Sbjct: 290 DN 291
>gi|239756223 PREDICTED: ankyrin repeat domain-containing protein
ENSP00000383090-like [Homo sapiens]
Length = 270
Score = 30.4 bits (67), Expect = 0.48
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 3 ESLVERTPDEAAPLVEGTSDEVQCL 27
E E TPDEAAPLVE T D + L
Sbjct: 239 EGTSEGTPDEAAPLVERTPDMAESL 263
Score = 29.3 bits (64), Expect = 1.1
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 2 AESLVERTPDEAAPLVEGTSDE 23
A LVERTPD A LVE T DE
Sbjct: 249 AAPLVERTPDMAESLVERTPDE 270
Score = 27.3 bits (59), Expect = 4.1
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 1 MAESLVERTPDE 12
MAESLVERTPDE
Sbjct: 259 MAESLVERTPDE 270
>gi|169209369 PREDICTED: similar to Putative ankyrin repeat
domain-containing protein ENSP00000383090 [Homo sapiens]
Length = 193
Score = 30.4 bits (67), Expect = 0.48
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 3 ESLVERTPDEAAPLVEGTSDEVQCL 27
E E TPDEAAPLVE T D + L
Sbjct: 162 EGTSEGTPDEAAPLVERTPDMAESL 186
Score = 29.3 bits (64), Expect = 1.1
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 2 AESLVERTPDEAAPLVEGTSDE 23
A LVERTPD A LVE T DE
Sbjct: 172 AAPLVERTPDMAESLVERTPDE 193
Score = 27.3 bits (59), Expect = 4.1
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 1 MAESLVERTPDE 12
MAESLVERTPDE
Sbjct: 182 MAESLVERTPDE 193
>gi|239745040 PREDICTED: ankyrin repeat domain-containing protein
ENSP00000383090-like [Homo sapiens]
Length = 270
Score = 30.4 bits (67), Expect = 0.48
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 3 ESLVERTPDEAAPLVEGTSDEVQCL 27
E E TPDEAAPLVE T D + L
Sbjct: 239 EGTSEGTPDEAAPLVERTPDMAESL 263
Score = 29.3 bits (64), Expect = 1.1
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 2 AESLVERTPDEAAPLVEGTSDE 23
A LVERTPD A LVE T DE
Sbjct: 249 AAPLVERTPDMAESLVERTPDE 270
Score = 27.3 bits (59), Expect = 4.1
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 1 MAESLVERTPDE 12
MAESLVERTPDE
Sbjct: 259 MAESLVERTPDE 270
>gi|58761506 sarcoma antigen NY-SAR-48 isoform b [Homo sapiens]
Length = 409
Score = 29.6 bits (65), Expect = 0.83
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 27 LGKTISGKIEESAGETPRKITRPVKETSEKFAWPQERPTKTTWEEKETSVKTECVAGVTS 86
L KTIS K E ++ PRK + + E E E +T + T + +
Sbjct: 118 LAKTISKKPESTSFSAPRKKSPDLSEAMEMM-------------ESQTLLLTLLSVKMEN 164
Query: 87 NKTEVLEEGTSK--MITCPTKKQLQKQVHMVR 116
N E E K +I C K++LQK+ H ++
Sbjct: 165 NLAE-FERRAEKNLLIMCKEKEKLQKKAHELK 195
>gi|58761504 sarcoma antigen NY-SAR-48 isoform a [Homo sapiens]
Length = 410
Score = 29.6 bits (65), Expect = 0.83
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 27 LGKTISGKIEESAGETPRKITRPVKETSEKFAWPQERPTKTTWEEKETSVKTECVAGVTS 86
L KTIS K E ++ PRK + + E E E +T + T + +
Sbjct: 119 LAKTISKKPESTSFSAPRKKSPDLSEAMEMM-------------ESQTLLLTLLSVKMEN 165
Query: 87 NKTEVLEEGTSK--MITCPTKKQLQKQVHMVR 116
N E E K +I C K++LQK+ H ++
Sbjct: 166 NLAE-FERRAEKNLLIMCKEKEKLQKKAHELK 196
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 28.9 bits (63), Expect = 1.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 4 SLVERTPD--------EAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRP 49
SL+ER P+ + +V GT EV+CLG S K ++S +PR + P
Sbjct: 432 SLLERNPNLLFTLKVRQFIEMVNGTDSEVRCLGGR-SPKSQDSYPVSPRPFSSP 484
>gi|192807334 arsenate resistance protein 2 isoform d [Homo sapiens]
Length = 872
Score = 28.9 bits (63), Expect = 1.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 33 GKIEESAGETPRKITRPVKETSEKFAWPQERPTKTTWEEKETSVKTEC 80
G + ES E+ KE +E+ +E+P + WE+ + + EC
Sbjct: 365 GSVSESESESESGQAEEEKEEAEEALKEKEKPKEEEWEKPKDAAGLEC 412
>gi|58331218 arsenate resistance protein 2 isoform a [Homo sapiens]
Length = 876
Score = 28.9 bits (63), Expect = 1.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 33 GKIEESAGETPRKITRPVKETSEKFAWPQERPTKTTWEEKETSVKTEC 80
G + ES E+ KE +E+ +E+P + WE+ + + EC
Sbjct: 365 GSVSESESESESGQAEEEKEEAEEALKEKEKPKEEEWEKPKDAAGLEC 412
>gi|11321642 bromodomain containing protein 1 [Homo sapiens]
Length = 1058
Score = 28.5 bits (62), Expect = 1.8
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 11 DEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRK-------ITRPVKETSEKFAWPQER 63
+EA P GT L + +E S PR+ I + +E + + +
Sbjct: 101 NEALPSAHGTPASASALPEPKVRIVEYSPPSAPRRPPVYYKFIEKSAEELDNEVEYDMDE 160
Query: 64 PTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQKQ 111
E K +CV V+ + E L + K C +KQ ++Q
Sbjct: 161 EDYAWLEIVNEKRKGDCVPAVSQSMFEFLMDRFEKESHCENQKQGEQQ 208
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 27.7 bits (60), Expect = 3.1
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 7 ERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFA 58
E+ E L+E +E + + ++ K E+S E + +T +KE +EK A
Sbjct: 1659 EKLSQEDKALIEQKLNEAKIKCEQLNLKAEQSKKELDKVVTTAIKEETEKVA 1710
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 27.7 bits (60), Expect = 3.1
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 7 ERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFA 58
E+ E L+E +E + + ++ K E+S E + +T +KE +EK A
Sbjct: 1670 EKLSQEDKALIEQKLNEAKIKCEQLNLKAEQSKKELDKVVTTAIKEETEKVA 1721
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 27.7 bits (60), Expect = 3.1
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 7 ERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFA 58
E+ E L+E +E + + ++ K E+S E + +T +KE +EK A
Sbjct: 1808 EKLSQEDKALIEQKLNEAKIKCEQLNLKAEQSKKELDKVVTTAIKEETEKVA 1859
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 27.7 bits (60), Expect = 3.1
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 7 ERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFA 58
E+ E L+E +E + + ++ K E+S E + +T +KE +EK A
Sbjct: 1630 EKLSQEDKALIEQKLNEAKIKCEQLNLKAEQSKKELDKVVTTAIKEETEKVA 1681
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 27.7 bits (60), Expect = 3.1
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 7 ERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFA 58
E+ E L+E +E + + ++ K E+S E + +T +KE +EK A
Sbjct: 1304 EKLSQEDKALIEQKLNEAKIKCEQLNLKAEQSKKELDKVVTTAIKEETEKVA 1355
>gi|87162461 fragile X mental retardation 2 [Homo sapiens]
Length = 1311
Score = 27.7 bits (60), Expect = 3.1
Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 10 PDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWPQERPTKTTW 69
P + P + ++ +T+S + + P+K+ + ++++F WP+ T +T
Sbjct: 600 PTQKIPETKALKHKLSTTSETVSQRT--IGKKQPKKVEK--NTSTDEFTWPKPNITSSTP 655
Query: 70 EEKETSVKTECVAG---VTSNKTEVLEEGTSKMITCPTKKQ 107
+EKE+ + G T++K +E + P KK+
Sbjct: 656 KEKESVELHDPPRGRNKATAHKPAPRKEPRPNIPLAPEKKK 696
>gi|16554449 zonadhesin isoform 3 [Homo sapiens]
Length = 2812
Score = 27.7 bits (60), Expect = 3.1
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 47 TRPVKETS---EKFAWPQERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGT--SKMIT 101
T P +ET+ EK + P E+PT T EE TSV+ ++ T T +E+ T ++ T
Sbjct: 802 TTPTEETTISTEKPSIPMEKPTLPT-EETTTSVEETTIS--TEKLTIPMEKPTISTEKPT 858
Query: 102 CPTKK 106
PT+K
Sbjct: 859 IPTEK 863
>gi|27881494 zonadhesin isoform 6 [Homo sapiens]
Length = 2721
Score = 27.7 bits (60), Expect = 3.1
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 47 TRPVKETS---EKFAWPQERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGT--SKMIT 101
T P +ET+ EK + P E+PT T EE TSV+ ++ T T +E+ T ++ T
Sbjct: 802 TTPTEETTISTEKPSIPMEKPTLPT-EETTTSVEETTIS--TEKLTIPMEKPTISTEKPT 858
Query: 102 CPTKK 106
PT+K
Sbjct: 859 IPTEK 863
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 27.3 bits (59), Expect = 4.1
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 4 SLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKIT-RPVKETSEKFAWPQE 62
SL E+ + L + T + LG+ ++ P K+ P+K ++ A
Sbjct: 746 SLEEQDQETLRTLEKETQQRRRSLGEQ-----DQMTLRPPEKVDLEPLKSLDQEIA---- 796
Query: 63 RPTKTTWEEKETSVKTECVAGVTSNKTEVLE 93
RP + +E S+K E V V S +TE+LE
Sbjct: 797 RPLENENQEFLKSLKEESVEAVKSLETEILE 827
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.125 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,808,529
Number of Sequences: 37866
Number of extensions: 248411
Number of successful extensions: 767
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 673
Number of HSP's gapped (non-prelim): 80
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.