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Search of human proteins with 239743285
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743285 PREDICTED: hypothetical protein XP_002342817 [Homo
sapiens]
(261 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749205 PREDICTED: hypothetical protein XP_002346953 [Homo ... 538 e-153
gi|239743285 PREDICTED: hypothetical protein XP_002342817 [Homo ... 538 e-153
gi|239508969 PREDICTED: hypothetical protein [Homo sapiens] 538 e-153
gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo ... 502 e-142
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 40 0.002
gi|91208420 bassoon protein [Homo sapiens] 38 0.010
gi|4507917 WEE1 tyrosine kinase isoform 1 [Homo sapiens] 38 0.010
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 37 0.023
gi|4502247 armadillo repeat protein [Homo sapiens] 37 0.023
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 36 0.030
gi|150417984 ATP-binding cassette, sub-family A, member 7 [Homo ... 35 0.050
gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Ho... 35 0.066
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 35 0.066
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 35 0.066
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 34 0.11
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 34 0.11
gi|239746652 PREDICTED: hypothetical protein [Homo sapiens] 34 0.11
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 34 0.11
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 34 0.11
gi|32455248 phosphoinositide-3-kinase, regulatory subunit 1 (alp... 34 0.15
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 34 0.15
gi|46852392 chromobox homolog 6 [Homo sapiens] 33 0.19
gi|169183882 PREDICTED: hypothetical protein [Homo sapiens] 33 0.25
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 33 0.33
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 33 0.33
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 33 0.33
gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens] 33 0.33
gi|197383784 zinc finger protein 213 [Homo sapiens] 33 0.33
gi|32698678 zinc finger protein 213 [Homo sapiens] 33 0.33
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 32 0.43
>gi|239749205 PREDICTED: hypothetical protein XP_002346953 [Homo
sapiens]
Length = 261
Score = 538 bits (1385), Expect = e-153
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR 60
MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR
Sbjct: 1 MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR 60
Query: 61 APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP
Sbjct: 61 APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
Query: 121 DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV 180
DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV
Sbjct: 121 DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV 180
Query: 181 GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP 240
GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP
Sbjct: 181 GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP 240
Query: 241 SPVWPGSSRLTLTLPSRVLRL 261
SPVWPGSSRLTLTLPSRVLRL
Sbjct: 241 SPVWPGSSRLTLTLPSRVLRL 261
>gi|239743285 PREDICTED: hypothetical protein XP_002342817 [Homo
sapiens]
Length = 261
Score = 538 bits (1385), Expect = e-153
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR 60
MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR
Sbjct: 1 MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR 60
Query: 61 APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP
Sbjct: 61 APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
Query: 121 DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV 180
DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV
Sbjct: 121 DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV 180
Query: 181 GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP 240
GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP
Sbjct: 181 GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP 240
Query: 241 SPVWPGSSRLTLTLPSRVLRL 261
SPVWPGSSRLTLTLPSRVLRL
Sbjct: 241 SPVWPGSSRLTLTLPSRVLRL 261
>gi|239508969 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 538 bits (1385), Expect = e-153
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR 60
MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR
Sbjct: 1 MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR 60
Query: 61 APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP
Sbjct: 61 APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
Query: 121 DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV 180
DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV
Sbjct: 121 DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV 180
Query: 181 GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP 240
GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP
Sbjct: 181 GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP 240
Query: 241 SPVWPGSSRLTLTLPSRVLRL 261
SPVWPGSSRLTLTLPSRVLRL
Sbjct: 241 SPVWPGSSRLTLTLPSRVLRL 261
>gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo
sapiens]
Length = 368
Score = 502 bits (1292), Expect = e-142
Identities = 243/246 (98%), Positives = 244/246 (99%)
Query: 1 MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR 60
MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR
Sbjct: 1 MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR 60
Query: 61 APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP
Sbjct: 61 APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
Query: 121 DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV 180
DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV
Sbjct: 121 DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV 180
Query: 181 GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP 240
GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP
Sbjct: 181 GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP 240
Query: 241 SPVWPG 246
SP+ G
Sbjct: 241 SPLRSG 246
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 40.0 bits (92), Expect = 0.002
Identities = 70/235 (29%), Positives = 85/235 (36%), Gaps = 34/235 (14%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGGW---DCASPAALACSVGMGRAP--PGL-GPVGVGPLV 74
GP Q G QG P PG+ G + L + G G AP PGL GP G+G
Sbjct: 182 GPPGFQGEPGPQGEPGP-PGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPG 240
Query: 75 PDLEEGVPGARGHSHAI-VGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQ 133
D G PG +G S V P V V G+P A + Q
Sbjct: 241 LDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGV----GVPGAA---GLPGPQG 293
Query: 134 PSAAR--EGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRW 191
PS A+ G RG G L GP+ + GV G+ GE+ + G +
Sbjct: 294 PSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGED-GEPGEQG 352
Query: 192 GEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPVWPG 246
+G G G PGS G G PP PK GPG P PG
Sbjct: 353 PQGLGGPPGL-PGSAGLPGRRG--------------PPGPK-GEAGPGGPPGVPG 391
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 37.7 bits (86), Expect = 0.010
Identities = 53/229 (23%), Positives = 83/229 (36%), Gaps = 16/229 (6%)
Query: 9 SPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPV 68
SP SP+ G P + ++ +GP P PG + A ++ APP +G V
Sbjct: 248 SPAHSPAKQPLGKPDQERS----RGPGGPQPGSRQAETARATSVP-GPAQAAAPPEVGRV 302
Query: 69 GVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGI-PDVAVEVV 127
P P A A A + A+E + T L G+ + +
Sbjct: 303 SPQPPQPTKPSTAEPRPPAGEAPAKSATAVPAGLGATEQTQEGLTGKLFGLGASLLTQAS 362
Query: 128 VASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAG-GEGVAVGEELQD 186
QP A +G + +++ +EA + +G G G A G + +
Sbjct: 363 TLMSVQPEADTQGQPAPSKGT------PKIVFNDASKEAGPKPLGSGPGPGPAPGAKTEP 416
Query: 187 TGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRAR 235
G R G G G G P +G TT Q +++ A P T + R
Sbjct: 417 -GARMGPGSGP--GALPKTGGTTSPKHGRAEHQAASKAAAKPKTMPKER 462
>gi|4507917 WEE1 tyrosine kinase isoform 1 [Homo sapiens]
Length = 646
Score = 37.7 bits (86), Expect = 0.010
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 195 EGEEQGREPGSGNTTG--TLGKELVSQVSTRRAVHPPTPKRARTGPGPSPVWPGSSRLTL 252
E EE+ E GSG++TG + +E S + R+ P P+R R+ PGP+P PG L
Sbjct: 35 EEEEEEEEEGSGHSTGEDSAFQEPDSPLPPARSPTEPGPERRRS-PGPAPGSPGELEEDL 93
Query: 253 TLP 255
LP
Sbjct: 94 LLP 96
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 36.6 bits (83), Expect = 0.023
Identities = 68/256 (26%), Positives = 87/256 (33%), Gaps = 48/256 (18%)
Query: 20 GGPGRNQTWVGGQGPKAPW----PGEGG----------WDCASPAALACSVGMG------ 59
G PG +GG+GP P PG G P L + G
Sbjct: 1347 GEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRG 1406
Query: 60 -RAPPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHG 118
R PPG G G+ P P L G+PG+ G + P SED G
Sbjct: 1407 ERGPPGPGEGGIAPGEPGL-PGLPGSPGPQGPV--GPPGKKGEKGDSED----------G 1453
Query: 119 IPDVAVEVVVASEQQPSA--AREGNRGDATDDVVMG-VHEELLIGPQVEEAARGVVRAGG 175
P + + EQ P G +GD +G E+ GP +RG+ G
Sbjct: 1454 APGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAG 1513
Query: 176 EGVAVGEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRA- 234
A G E GP G E+G EPG +G + + V P P+ A
Sbjct: 1514 RPGAKGPE----GPPGPTGRQGEKG-EPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGAT 1568
Query: 235 ----RTGPGPSPVWPG 246
GP P V PG
Sbjct: 1569 GVQGERGP-PGLVLPG 1583
Score = 31.2 bits (69), Expect = 0.95
Identities = 66/240 (27%), Positives = 79/240 (32%), Gaps = 37/240 (15%)
Query: 29 VGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVGPLVPDLEEGVPGARGHS 88
VGG G P PG G A PA G+ P GP G G P G+PG G S
Sbjct: 2179 VGGHGDPGP-PGAPG--LAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPS 2235
Query: 89 HAI--VGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAAREGNRGDAT 146
+ G P V + + A D V S P G +G+
Sbjct: 2236 GLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPV--GPKGEPG 2293
Query: 147 DDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGE-----ELQDTGPRWGEGEGEEQGR 201
G L G + E+ A G G G VGE + GPR +GE G
Sbjct: 2294 PTGAPGQAVVGLPGAKGEKGAPG----GLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAG- 2348
Query: 202 EPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPG------PSPVWPGSSRLTLTLP 255
EPG G G P PK + PG P P P + L LP
Sbjct: 2349 EPGDPGEDGQKG--------------APGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLP 2394
>gi|4502247 armadillo repeat protein [Homo sapiens]
Length = 962
Score = 36.6 bits (83), Expect = 0.023
Identities = 38/139 (27%), Positives = 53/139 (38%), Gaps = 30/139 (21%)
Query: 17 LHSGGP----GRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVGP 72
L GGP R GG P+ P P + SP+ + S G+G PP GP+G GP
Sbjct: 169 LRGGGPVATLSRAYLSSGGGFPEGPEPRD------SPSYGSLSRGLGMRPPRAGPLGPGP 222
Query: 73 -----LVPDLEE--------GVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGI 119
+P E G PG R PE A ED + + G
Sbjct: 223 GDGCFTLPGHREAFPVGPEPGPPGGRSL-------PERFQAEPYGLEDDTRSLAADDEGG 275
Query: 120 PDVAVEVVVASEQQPSAAR 138
P++ + A+ ++P R
Sbjct: 276 PELEPDYGTATRRRPECGR 294
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 36.2 bits (82), Expect = 0.030
Identities = 66/248 (26%), Positives = 89/248 (35%), Gaps = 57/248 (22%)
Query: 2 RASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRA 61
R + P P S GP + G QGP P +G L VG+
Sbjct: 646 RGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPVGLQG---------LRGEVGLPGV 696
Query: 62 PPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPD 121
GP+G P P ++G G RG + G+P + G+P
Sbjct: 697 KGDKGPMG--PPGPKGDQGEKGPRG----LTGEP-------------------GMRGLPG 731
Query: 122 VAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVG 181
E P A +G G A D H+ GP+ E+ G+ G G
Sbjct: 732 AVGE--------PGA--KGAMGPAGPDG----HQ----GPRGEQGLTGMPGIRGPPGPSG 773
Query: 182 EELQD--TGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVH-PPTPKRARTGP 238
+ + TGP+ +G GR PG G GK + S+ S+ V PP P A P
Sbjct: 774 DPGKPGLTGPQGPQGLPGTPGR-PGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPP 832
Query: 239 GPSPVWPG 246
GP P PG
Sbjct: 833 GP-PGAPG 839
Score = 28.9 bits (63), Expect = 4.7
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 30 GGQGPKAPWPGEGGWDCASPAA--LACSVGMGRAPPGLGPVGVGPLVPDLEEGVPGARGH 87
G GP+ P PGEG P L+ S PPG GP P ++G PG RGH
Sbjct: 874 GPPGPRGP-PGEGLPGPPGPPGSFLSNSETFLSGPPG----PPGPPGPKGDQGPPGPRGH 928
>gi|150417984 ATP-binding cassette, sub-family A, member 7 [Homo
sapiens]
Length = 2146
Score = 35.4 bits (80), Expect = 0.050
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 1 MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR 60
+ A C IP P P R W G + PK+P P P L V +
Sbjct: 751 LEAVCPGQYGIPEPWNF----PFRRSYWCGPRPPKSPAP--------CPTPLDPKVLVEE 798
Query: 61 APPGLGPVGVGPLVPDLEEGVPGA 84
APPGL P G V LE+ PG+
Sbjct: 799 APPGLSP---GVSVRSLEKRFPGS 819
>gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Homo
sapiens]
Length = 2378
Score = 35.0 bits (79), Expect = 0.066
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 13/110 (11%)
Query: 89 HAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQ--QPSAAREGNRGDAT 146
H +V + +AA A+ + VA HGI + +A+E Q A G +
Sbjct: 652 HGVVANEDAAQAIAKPDAAHGIANEVAAHGIANEDAAQGIANEDAAQGIANEVAAHGISK 711
Query: 147 DDVVMGV----------HEELLIGPQVEEAARGVVR-AGGEGVAVGEELQ 185
+D V G+ HE+ + G E+A GV + GVA + +Q
Sbjct: 712 EDAVQGIANEDAAQGIAHEDAVQGIANEDAVHGVAKEVAAHGVANEDPVQ 761
Score = 35.0 bits (79), Expect = 0.066
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 16/97 (16%)
Query: 92 VGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQ---------------QPSA 136
V + +AAHA+ + VA GI V +A+E +P A
Sbjct: 2002 VANEDAAHAIAKPDAARGIANEVAAQGIATEDVADGIANEDAAHGVANEDAAQAIAKPDA 2061
Query: 137 ARE-GNRGDATDDVVMGVHEELLIGPQVEEAARGVVR 172
A N G AT+DV G+ E+ + G EEAA+ + +
Sbjct: 2062 AHGIANEGIATEDVADGIAEDAVQGITNEEAAQAIAK 2098
Score = 34.7 bits (78), Expect = 0.086
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 89 HAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASE-----------QQPSAA 137
H +V + +AA A+ + VA HGI + +A+E Q A
Sbjct: 390 HGVVANEDAAQAIAKPDAAHGIANEVAAHGIANEDAAQGIANEVAAHGISKEDAVQGIAN 449
Query: 138 REGNRGDATDDVVMGV-HEELLIGPQVEEAARGVVR-AGGEGVA 179
+ +G A +D G+ HE+ + G E+A GV + GVA
Sbjct: 450 EDAAQGIAHEDAAQGIAHEDAVQGIANEDAVHGVAKEVAAHGVA 493
Score = 32.3 bits (72), Expect = 0.43
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 89 HAIVGDPEAAHAVVVASEDSSVTCTVALHGI--PDVAVEVVVASEQQPSAAREGNRGDAT 146
H++V + +AA A+ + VA H I D A + Q A G +
Sbjct: 1585 HSVVANEDAAQAIAKPDAAHGIANEVAAHSIANKDAAQGIANQDAAQGIANEVAAHGISK 1644
Query: 147 DDVVMGV-HEELLIGPQVEEAARGVVRAGG-EGVA 179
+D V G+ +E+ G E+AA+G+ +G+A
Sbjct: 1645 EDAVQGIANEDAAQGIANEDAAQGIAHEDAVQGIA 1679
Score = 31.6 bits (70), Expect = 0.73
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Query: 92 VGDPEAAHAVVVASEDSS--VTCTVALHGIPDVAVEVVVASEQQPSAAREGNRGDATDDV 149
V + EA H VV A+ED++ + A HGI + V VA++ G AT+DV
Sbjct: 862 VVNEEALHGVV-ANEDAAQAIAKPDAAHGIANEGVANEVAAQ-----------GIATEDV 909
Query: 150 VMGVHEELLIGPQVEEAARGVVR 172
G+ ++ G EEAA+ + +
Sbjct: 910 ADGIAKDAAHGITKEEAAQAIAK 932
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 35.0 bits (79), Expect = 0.066
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 131 EQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPR 190
E + EG G+ ++ G G EE G GEG EE + G
Sbjct: 853 EGEGKGEEEGEEGEGEEEGEEGE------GEGEEEEGEGEGEEEGEGEGEEEEGEGEGEE 906
Query: 191 WGEGEGEEQGREPGSGNTTGTLGK 214
GEGEGEE+ E G G G G+
Sbjct: 907 EGEGEGEEEEGE-GKGEEEGEEGE 929
Score = 28.5 bits (62), Expect = 6.2
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 175 GEGVAVGEELQDTGPRWGEGE--GEEQGREPGSGNTTGTLGKE 215
GEG EE ++ G GEGE GE +G E G G + E
Sbjct: 986 GEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGE 1028
Score = 28.1 bits (61), Expect = 8.1
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 131 EQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV--GEELQDTG 188
E++ E G+ ++ G EE + EE G GEG GE +
Sbjct: 967 EEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVE 1026
Query: 189 PRWGEGEGE-EQGREPGSGNTTGTLGKE 215
GEGEGE E+G E G G+E
Sbjct: 1027 GEEGEGEGEEEEGEEEGEEREKEGEGEE 1054
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 35.0 bits (79), Expect = 0.066
Identities = 54/208 (25%), Positives = 74/208 (35%), Gaps = 36/208 (17%)
Query: 12 PSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVG 71
P+ + + GP V G+ P + G SP A A V G + G P G
Sbjct: 275 PAGDSMDAEGPAGRARRVSGE------PQQSGDGSLSPQAEAIEVAAGESA-GRSP---G 324
Query: 72 PLVPDLEEG--VPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVA 129
L D E VPG +G A GD A A ED + D +
Sbjct: 325 ELAWDAAEEAEVPGVKGSEEAAPGDARAD-----AGEDR----------VGDGPQQEPGE 369
Query: 130 SEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGP 189
E++ + EG R ++ G EE EA+RG + + L + GP
Sbjct: 370 DEERRERSPEGPR----EEEAAGGEEESPDSSPHGEASRGAAEPEAQ---LSNHLAEEGP 422
Query: 190 RWGEGEGEEQG--REPGSGNTTGTLGKE 215
G GE RE G + LG+E
Sbjct: 423 AEGSGEAARVNGRREDGEASEPRALGQE 450
Score = 29.3 bits (64), Expect = 3.6
Identities = 37/119 (31%), Positives = 44/119 (36%), Gaps = 20/119 (16%)
Query: 134 PSAAREGNRGDATDDVVMGVHEELLIGPQ----VEEAARG---VVRAGGEGVAVGEELQD 186
P A R G G A + GP+ EEA RG V AGG G G E +
Sbjct: 23 PLAERPGEPGAAGGEAE---------GPEGSEGAEEAPRGAAAVKEAGGGGPDRGPEAEA 73
Query: 187 TGPRWGEGEGE-EQGREPGSGNTTG---TLGKELVSQVSTRRAVHPPTPKRARTGPGPS 241
G R GE E E+G G+ G T G + V S R A+ P S
Sbjct: 74 RGTRGAHGETEAEEGAPEGAEVPQGGEETSGAQQVEGASPGRGAQGEPRGEAQREPEDS 132
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 34.3 bits (77), Expect = 0.11
Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 4 SCSSSSPIPSPSYLHSGGPGRNQTW-VGGQGPKAPW----PGEGGWDCAS----PAALAC 54
S ++ P P + + GPG GG G + PG G DC++ PA
Sbjct: 522 SAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVA 581
Query: 55 SVGMGRAPPGLGPVG---VGPLVPDLEEGVPGARGHSH 89
+ G G A G GP G P P L EG G H
Sbjct: 582 AAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYH 619
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 34.3 bits (77), Expect = 0.11
Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 4 SCSSSSPIPSPSYLHSGGPGRNQTW-VGGQGPKAPW----PGEGGWDCAS----PAALAC 54
S ++ P P + + GPG GG G + PG G DC++ PA
Sbjct: 522 SAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVA 581
Query: 55 SVGMGRAPPGLGPVG---VGPLVPDLEEGVPGARGHSH 89
+ G G A G GP G P P L EG G H
Sbjct: 582 AAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYH 619
>gi|239746652 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1513
Score = 34.3 bits (77), Expect = 0.11
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 92 VGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQ--QPSAAREGNRGDATDDV 149
V + +AAH V + VA HGI +A+E Q A + +G A +D
Sbjct: 371 VANEDAAHGVANEDAAQGIANEVATHGISKEDAVQGIANEDAAQGIANEDAAQGIAHEDA 430
Query: 150 VMGV-HEELLIGPQVEEAARGVVRAGG-EGVAVGEELQ 185
V G+ +E+ + G E AA GV +GVA + +Q
Sbjct: 431 VQGIANEDAVHGVAKEVAAHGVANEDPVQGVANEDAVQ 468
Score = 33.9 bits (76), Expect = 0.15
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 92 VGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAAREGNRGDATDDVVM 151
+ + +AAH V ++ A HGI + V VA++ G AT+DV
Sbjct: 1137 IANEDAAHGVANEDAAQAIAKPDAAHGIANEGVANEVAAQ-----------GIATEDVAD 1185
Query: 152 GVHEELLIGPQVEEAARGVVR 172
G+ E+ + G EEAA+ + +
Sbjct: 1186 GIAEDAVQGITNEEAAQAIAK 1206
Score = 32.7 bits (73), Expect = 0.33
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 89 HAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQ--QPSAAREGNRGDAT 146
H++V + +AA A+ + VA H I + +A+E Q A G +
Sbjct: 648 HSVVANEDAAQAIAKPDAAHGIANEVAAHSIANEDAAQGIANEDAAQGIANEVAAHGISK 707
Query: 147 DDVVMGV-HEELLIGPQVEEAARGVVRAGG-EGVA 179
+D V G+ +E+ G E+AA+G+ +G+A
Sbjct: 708 EDAVQGIANEDAAQGIANEDAAQGIAHEDAVQGIA 742
Score = 32.0 bits (71), Expect = 0.56
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 20/84 (23%)
Query: 89 HAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAAREGNRGDATDD 148
H +V + +AA A+ A DS+ HGI + V VA++ G AT+D
Sbjct: 292 HGVVANEDAAQAI--AKPDSA-------HGIANEGVANEVAAQ-----------GIATED 331
Query: 149 VVMGVHEELLIGPQVEEAARGVVR 172
V G+ E+ G EEAA+ + +
Sbjct: 332 VADGIAEDAAHGITNEEAAQAIAK 355
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 34.3 bits (77), Expect = 0.11
Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 4 SCSSSSPIPSPSYLHSGGPGRNQTW-VGGQGPKAPW----PGEGGWDCAS----PAALAC 54
S ++ P P + + GPG GG G + PG G DC++ PA
Sbjct: 522 SAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVA 581
Query: 55 SVGMGRAPPGLGPVG---VGPLVPDLEEGVPGARGHSH 89
+ G G A G GP G P P L EG G H
Sbjct: 582 AAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYH 619
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 34.3 bits (77), Expect = 0.11
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 20 GGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGL-GPVGVGPLVPDLE 78
G PG+ VG GP P +G P+ L S G PPG+ GP G+ L D +
Sbjct: 1168 GFPGK----VGSPGPPGPQAEKGSEGIRGPSGLPGSPG-PPGPPGIQGPAGLDGL--DGK 1220
Query: 79 EGVPGARG 86
+G PG RG
Sbjct: 1221 DGKPGLRG 1228
Score = 30.8 bits (68), Expect = 1.2
Identities = 27/69 (39%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVG-VGPLVPDLEE 79
GP Q + G GPK PG G A GM P G +G VGP P E
Sbjct: 1353 GPPGKQGFYGPPGPKGD-PGAAGQK--GQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGER 1409
Query: 80 GVPGARGHS 88
G PGA G S
Sbjct: 1410 GHPGAPGPS 1418
>gi|32455248 phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
isoform 1 [Homo sapiens]
Length = 724
Score = 33.9 bits (76), Expect = 0.15
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 193 EGEGEEQGREPGSGNTTGTLGKELVSQVST--RRAVHPPTPKRARTGPGPSPVWPGSSRL 250
E EE G G TTG G + V R+ + PPTPK P P PV PGSS+
Sbjct: 47 EARPEEIGWLNGYNETTGERGDFPGTYVEYIGRKKISPPTPKPRP--PRPLPVAPGSSKT 104
Query: 251 TLTLPSRVLRL 261
+ + L L
Sbjct: 105 EADVEQQALTL 115
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 33.9 bits (76), Expect = 0.15
Identities = 50/187 (26%), Positives = 75/187 (40%), Gaps = 19/187 (10%)
Query: 66 GPVGVGPLVPDLEEGVPGARGH--SHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVA 123
GPVGV D +G PG RG S + G P + S+++ G P +
Sbjct: 1239 GPVGVPGQKGD--QGAPGERGPPGSPGLQGFPGI-------TPPSNISGAPGDKGAPGIF 1289
Query: 124 VEVVVASEQQP--SAAREGNRGDATDDVVMGVH-EELLIGPQVEEAARGVVRAGGEGVAV 180
P SAA G++GD + G + G + GV GE
Sbjct: 1290 GLKGYRGPPGPPGSAALPGSKGDTGNPGAPGTPGTKGWAGDSGPQGRPGVFGLPGEKGPR 1349
Query: 181 GEE--LQDTGPRWGEGEGEEQGR--EPGSGNTTGTLGKELVSQVSTRRAVHPPT-PKRAR 235
GE+ + +TGP G+ +G +PG GT+G ++ + + AV P T + R
Sbjct: 1350 GEQGFMGNTGPTGAVGDRGPKGPKGDPGFPGAPGTVGAPGIAGIPQKIAVQPGTVGPQGR 1409
Query: 236 TGPGPSP 242
GP +P
Sbjct: 1410 RGPPGAP 1416
>gi|46852392 chromobox homolog 6 [Homo sapiens]
Length = 412
Score = 33.5 bits (75), Expect = 0.19
Identities = 47/183 (25%), Positives = 64/183 (34%), Gaps = 23/183 (12%)
Query: 12 PSPSYLHSGGPGRNQTWVGGQG-----PKAPWPGEGGWDCASPAALACSVGMGRAPPGLG 66
P P+ L + PG+ + G G P AP+ P+ S PP L
Sbjct: 237 PPPAPLVAPSPGKAEASAPGPGLLLAAPAAPYDARSSGSSGCPSPTPQSSDPDDTPPKLL 296
Query: 67 PVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEV 126
P V P P E P S PE+A S+ + T A P A E
Sbjct: 297 PETVSPSAPSWRE--PEVLDLSL----PPESA----ATSKRAPPEVTAAAGPAPPTAPEP 346
Query: 127 VVASEQQPSAAREGNRGDATDDVVMGVHEELL-------IGPQ-VEEAARGVVRAGGEGV 178
AS + + ++ VV V LL P+ E+ A GV A G G
Sbjct: 347 AGASSEPEAGDWRPEMSPCSNVVVTDVTSNLLTVTIKEFCNPEDFEKVAAGVAGAAGGGG 406
Query: 179 AVG 181
++G
Sbjct: 407 SIG 409
>gi|169183882 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 33.1 bits (74), Expect = 0.25
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVGPLVPDLEEG 80
GP G QGP+ G W C +P SVG+GR P G VG VPD
Sbjct: 7 GPRCGVRVCGAQGPRC---GVSVWGCRAPDV--GSVGVGRRVPDAGSECVGHRVPDAGSE 61
Query: 81 VPGAR 85
G R
Sbjct: 62 CVGHR 66
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 32.7 bits (73), Expect = 0.33
Identities = 60/220 (27%), Positives = 79/220 (35%), Gaps = 30/220 (13%)
Query: 30 GGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVGPLVPDLEEGVPGARGH-S 88
G QGPK PG G A A R PG GVGP+ P E G PG RG
Sbjct: 465 GEQGPKGE-PGPAGPQGAPGPAGEEGKRGARGEPG----GVGPIGPPGERGAPGNRGFPG 519
Query: 89 HAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAAREGNRGDATDD 148
+ P+ A S + +G P E + + G GDA
Sbjct: 520 QDGLAGPKGAPG---ERGPSGLAGPKGANGDPGRPGEPGLPG----ARGLTGRPGDAGPQ 572
Query: 149 VVMGVH----EELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRWGEGEGEEQGRE-- 202
+G E+ GP + ARG + G G GP+ GE + G +
Sbjct: 573 GKVGPSGAPGEDGRPGPPGPQGARG--QPGVMGF--------PGPKGANGEPGKAGEKGL 622
Query: 203 PGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTG-PGPS 241
PG+ G GK+ + + P +R G PGPS
Sbjct: 623 PGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPS 662
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 32.7 bits (73), Expect = 0.33
Identities = 60/220 (27%), Positives = 79/220 (35%), Gaps = 30/220 (13%)
Query: 30 GGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVGPLVPDLEEGVPGARGH-S 88
G QGPK PG G A A R PG GVGP+ P E G PG RG
Sbjct: 396 GEQGPKGE-PGPAGPQGAPGPAGEEGKRGARGEPG----GVGPIGPPGERGAPGNRGFPG 450
Query: 89 HAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAAREGNRGDATDD 148
+ P+ A S + +G P E + + G GDA
Sbjct: 451 QDGLAGPKGAPG---ERGPSGLAGPKGANGDPGRPGEPGLPG----ARGLTGRPGDAGPQ 503
Query: 149 VVMGVH----EELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRWGEGEGEEQGRE-- 202
+G E+ GP + ARG + G G GP+ GE + G +
Sbjct: 504 GKVGPSGAPGEDGRPGPPGPQGARG--QPGVMGF--------PGPKGANGEPGKAGEKGL 553
Query: 203 PGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTG-PGPS 241
PG+ G GK+ + + P +R G PGPS
Sbjct: 554 PGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPS 593
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 32.7 bits (73), Expect = 0.33
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 14/67 (20%)
Query: 47 ASPAALACSVGMGRAPPGLGPVG--------VGPLVPDLEEGV------PGARGHSHAIV 92
++P + S+G G PPG+ P G G L P + + PGA GH
Sbjct: 219 SAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSA 278
Query: 93 GDPEAAH 99
G P A H
Sbjct: 279 GTPGAGH 285
Score = 28.5 bits (62), Expect = 6.2
Identities = 28/86 (32%), Positives = 31/86 (36%), Gaps = 16/86 (18%)
Query: 8 SSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGP 67
S+P P S L SG P G P P PG AL + PP + P
Sbjct: 219 SAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPG----------ALPPGIPPAMPPPPMPP 268
Query: 68 VGVGPLVPDLEEGVPGA----RGHSH 89
G P G PGA GHSH
Sbjct: 269 GAAGHGPP--SAGTPGAGHPGHGHSH 292
>gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens]
Length = 1834
Score = 32.7 bits (73), Expect = 0.33
Identities = 48/160 (30%), Positives = 59/160 (36%), Gaps = 22/160 (13%)
Query: 6 SSSSPIPSPSYLHSGGPGRNQTWV-GGQGPKAP-------WPGE---GGWDCAS--PAAL 52
SS+ P+P+ L G W GQ P P W G G W A L
Sbjct: 498 SSTPPLPASRILKEG-------WERAGQCPPPPERKQSFLWEGSALTGAWAMEDFYTARL 550
Query: 53 ACSVGMGRAPPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTC 112
+ R GL V PLVP + R S A+ G P A S +S
Sbjct: 551 VPPLVPQRPAQGLMQEPVPPLVPPEHSELSERR--SPALHGTPTAGCGSRGPSPSASQRE 608
Query: 113 TVALHGIPDVAVEVVVASEQQPSAAREGNRGDATDDVVMG 152
AL + D+A E + AS S G+ G A DVV G
Sbjct: 609 HQALQDLVDLAREGLSASPWPGSGGLAGSEGTAGLDVVPG 648
>gi|197383784 zinc finger protein 213 [Homo sapiens]
Length = 459
Score = 32.7 bits (73), Expect = 0.33
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 63 PGLGPVGVGPLVPDLE-EGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPD 121
PG G V LV DL+ + V R + +PEAA S+ + TV P
Sbjct: 110 PGSGEEAVA-LVEDLQKQPVKAWRQDVPSEEAEPEAAGR---GSQATGPPPTVGARRRPS 165
Query: 122 VAVEVVVASEQQPSAAREGNRGDATDD-VVMGVHEELLIG 160
V E S Q P+ +EG G+ TD V GVH + +G
Sbjct: 166 VPQEQHSHSAQPPALLKEGRPGETTDTCFVSGVHGPVALG 205
>gi|32698678 zinc finger protein 213 [Homo sapiens]
Length = 459
Score = 32.7 bits (73), Expect = 0.33
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 63 PGLGPVGVGPLVPDLE-EGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPD 121
PG G V LV DL+ + V R + +PEAA S+ + TV P
Sbjct: 110 PGSGEEAVA-LVEDLQKQPVKAWRQDVPSEEAEPEAAGR---GSQATGPPPTVGARRRPS 165
Query: 122 VAVEVVVASEQQPSAAREGNRGDATDD-VVMGVHEELLIG 160
V E S Q P+ +EG G+ TD V GVH + +G
Sbjct: 166 VPQEQHSHSAQPPALLKEGRPGETTDTCFVSGVHGPVALG 205
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 32.3 bits (72), Expect = 0.43
Identities = 68/265 (25%), Positives = 89/265 (33%), Gaps = 56/265 (21%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVGPLVPDLEEG 80
GP + G GP P PGEGG P + PG P VGPL P E G
Sbjct: 669 GPPGPTGFQGLPGPPGP-PGEGG----KPG--------DQGVPG-DPGAVGPLGPRGERG 714
Query: 81 VPGARGHSHAIVG-----------DPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVA 129
PG RG I G P+ S T L G+P E +A
Sbjct: 715 NPGERGEP-GITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPG---ERGIA 770
Query: 130 SEQQPSAAR-----EGNRGDATDDVVMGVHEEL-------LIGPQVEEAARGVVRAGGEG 177
P R +G G A +D G+ L G + E RG+V G
Sbjct: 771 GTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSR 830
Query: 178 VAVGEELQD--------TGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPP 229
G ++ GP+ +G+ +G EPG G G ++ H P
Sbjct: 831 GNPGSRGENGPTGAVGFAGPQGPDGQPGVKG-EPGEPGQKGDAGSPGPQGLAGSPGPHGP 889
Query: 230 T------PKRARTGPGPSPVWPGSS 248
R GP + +PGS+
Sbjct: 890 NGVPGLKGGRGTQGPPGATGFPGSA 914
Score = 32.3 bits (72), Expect = 0.43
Identities = 34/86 (39%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 19 SGGPGRNQTWVGGQGPKAP--WPG-EGGWDCASPAALACSVGM-GRAPPGLGPVGV---- 70
+G PG Q G GP P PG +GG P G GR P GP G
Sbjct: 872 AGSPGP-QGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPP-GPAGAPGPA 929
Query: 71 GPLVPDLEEGVPGARGH--SHAIVGD 94
GPL +EG PG RG SH VGD
Sbjct: 930 GPLGEPGKEGPPGLRGDPGSHGRVGD 955
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.133 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,184,434
Number of Sequences: 37866
Number of extensions: 903737
Number of successful extensions: 3583
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 155
Number of HSP's that attempted gapping in prelim test: 3368
Number of HSP's gapped (non-prelim): 348
length of query: 261
length of database: 18,247,518
effective HSP length: 100
effective length of query: 161
effective length of database: 14,460,918
effective search space: 2328207798
effective search space used: 2328207798
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.