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Search of human proteins with 239743215
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743215 PREDICTED: hypothetical protein [Homo sapiens]
(320 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743215 PREDICTED: hypothetical protein [Homo sapiens] 667 0.0
gi|239754614 PREDICTED: hypothetical protein [Homo sapiens] 663 0.0
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 37 0.018
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 37 0.018
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 37 0.023
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 37 0.023
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 37 0.023
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 37 0.023
gi|34335253 disks large-associated protein 4 isoform a [Homo sap... 35 0.068
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 35 0.068
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 35 0.068
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 35 0.089
gi|169211906 PREDICTED: hypothetical protein [Homo sapiens] 35 0.089
gi|169211049 PREDICTED: hypothetical protein [Homo sapiens] 35 0.089
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 34 0.15
gi|155029548 phosphofurin acidic cluster sorting protein 2 isofo... 34 0.15
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 34 0.15
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 34 0.15
gi|239757964 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26
gi|169213977 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26
gi|169214385 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26
gi|169213314 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26
gi|221316599 chromogranin B precursor [Homo sapiens] 33 0.26
gi|239752449 PREDICTED: hypothetical protein [Homo sapiens] 33 0.34
gi|6912246 CD3E antigen, epsilon polypeptide associated protein ... 33 0.34
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 33 0.34
gi|120953300 leucine-rich repeats and IQ motif containing 1 isof... 33 0.34
gi|120953243 leucine-rich repeats and IQ motif containing 1 isof... 33 0.34
gi|155029546 phosphofurin acidic cluster sorting protein 2 isofo... 33 0.44
>gi|239743215 PREDICTED: hypothetical protein [Homo sapiens]
Length = 320
Score = 667 bits (1720), Expect = 0.0
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MAHWSTLFLAVSASGFWRCCSVGPKFADPGSQDAGRAYAPRRTGRRVGLLLPLLARFAPQ 60
MAHWSTLFLAVSASGFWRCCSVGPKFADPGSQDAGRAYAPRRTGRRVGLLLPLLARFAPQ
Sbjct: 1 MAHWSTLFLAVSASGFWRCCSVGPKFADPGSQDAGRAYAPRRTGRRVGLLLPLLARFAPQ 60
Query: 61 SPSLAAFTTFIGAFWTLCLTVLKGATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPT 120
SPSLAAFTTFIGAFWTLCLTVLKGATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPT
Sbjct: 61 SPSLAAFTTFIGAFWTLCLTVLKGATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPT 120
Query: 121 LGRGRGVLPARLCRAEIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCS 180
LGRGRGVLPARLCRAEIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCS
Sbjct: 121 LGRGRGVLPARLCRAEIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCS 180
Query: 181 PERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTF 240
PERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTF
Sbjct: 181 PERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTF 240
Query: 241 QAVNLESEGAPGNCGVTAPPGGHIWLKQVEVQTHLENRCHRLKATVTTTTRPGAEPRSPP 300
QAVNLESEGAPGNCGVTAPPGGHIWLKQVEVQTHLENRCHRLKATVTTTTRPGAEPRSPP
Sbjct: 241 QAVNLESEGAPGNCGVTAPPGGHIWLKQVEVQTHLENRCHRLKATVTTTTRPGAEPRSPP 300
Query: 301 FIRTCGEIMNVFSDMFIFRG 320
FIRTCGEIMNVFSDMFIFRG
Sbjct: 301 FIRTCGEIMNVFSDMFIFRG 320
>gi|239754614 PREDICTED: hypothetical protein [Homo sapiens]
Length = 490
Score = 663 bits (1711), Expect = 0.0
Identities = 318/320 (99%), Positives = 319/320 (99%)
Query: 1 MAHWSTLFLAVSASGFWRCCSVGPKFADPGSQDAGRAYAPRRTGRRVGLLLPLLARFAPQ 60
MAHWSTLFLAVSASGFWRCCSVGPKFADPGSQDAGRAYAPRRTGRRVGLLLPLLARFAPQ
Sbjct: 171 MAHWSTLFLAVSASGFWRCCSVGPKFADPGSQDAGRAYAPRRTGRRVGLLLPLLARFAPQ 230
Query: 61 SPSLAAFTTFIGAFWTLCLTVLKGATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPT 120
SPSLAAFTTFIGAFWTLCLTVLKGATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPT
Sbjct: 231 SPSLAAFTTFIGAFWTLCLTVLKGATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPT 290
Query: 121 LGRGRGVLPARLCRAEIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCS 180
LGRG+GVLPARLCRAEIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCS
Sbjct: 291 LGRGQGVLPARLCRAEIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCS 350
Query: 181 PERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTF 240
PERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTF
Sbjct: 351 PERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTF 410
Query: 241 QAVNLESEGAPGNCGVTAPPGGHIWLKQVEVQTHLENRCHRLKATVTTTTRPGAEPRSPP 300
QAVNLE EGAPGNCGVTAPPGGHIWLKQVEVQTHLENRCHRLKATVTTTTRPGAEPRSPP
Sbjct: 411 QAVNLEREGAPGNCGVTAPPGGHIWLKQVEVQTHLENRCHRLKATVTTTTRPGAEPRSPP 470
Query: 301 FIRTCGEIMNVFSDMFIFRG 320
FIRTCGEIMNVFSDMFIFRG
Sbjct: 471 FIRTCGEIMNVFSDMFIFRG 490
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 37.4 bits (85), Expect = 0.018
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 177 GNCSPERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKER-KKEKVRKKTVDDRRR 235
GN +P S+ ++ Q QE R + + +EK +++ KER K+EK R+K +R++
Sbjct: 710 GNSTPLGSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKEREKQEKEREKQEKERQK 769
Query: 236 PQVTFQAVNL----ESEGAPG 252
+ Q L +++G PG
Sbjct: 770 QEKKAQGRKLSLRRKADGPPG 790
Score = 34.7 bits (78), Expect = 0.12
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 169 PVCTAH--LPGNCSPERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKK-EKV 225
PV TA P SP S P ++++ + QE R + + ++K ++E KER+K EK
Sbjct: 694 PVVTAEGLHPSLPSPTGNSTPLG-SSKETRKQEKERQKQEKERQKQEKEREKERQKQEKE 752
Query: 226 RKKTVDDRRRPQVTFQAVNLESEGAPGNCGVTA--PPGGH 263
R+K +R + + Q +++G + A PPG H
Sbjct: 753 REKQEKEREKQEKERQKQEKKAQGRKLSLRRKADGPPGPH 792
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 37.4 bits (85), Expect = 0.018
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 143 TEALSELIRSHPAYQQISGECS-VEALPVC--TAHLPGNCSPERRSRPWPPAARKLQP-Q 198
T+ SE+I S A ++ E VEAL V T G PE P A ++Q +
Sbjct: 1954 TQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPESEDVEAPEAEGEMQEAE 2013
Query: 199 EPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLESE 248
E +P + G + + K EG + ++ E +KT D + +A E E
Sbjct: 2014 EEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEE 2063
Score = 33.1 bits (74), Expect = 0.34
Identities = 32/125 (25%), Positives = 45/125 (36%), Gaps = 9/125 (7%)
Query: 144 EALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPPAARKLQPQEP-RR 202
EA E + Q+ GE E+ V G PE P A + Q E
Sbjct: 2059 EAEEEAQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEA 2118
Query: 203 PRTQGTKEKGKE-------EGRKERKKEKVRKKTVDDRRRPQVT-FQAVNLESEGAPGNC 254
P T+G + E EG + + E V + + +P+ +A E E P
Sbjct: 2119 PETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELE 2178
Query: 255 GVTAP 259
GV AP
Sbjct: 2179 GVEAP 2183
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 37.0 bits (84), Expect = 0.023
Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 11/189 (5%)
Query: 84 GATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPTLGRGR--GVLPARLCRAEIWCLQ 141
G TG P T L SPR+ + + G +PA A+ +
Sbjct: 133 GKTGNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVS 192
Query: 142 FTEA--LSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPPAARKLQPQ- 198
+A SE S + G+ SV+ V + + SP R++ P P + PQ
Sbjct: 193 AGQADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAPGKVGDVTPQV 252
Query: 199 ------EPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLESEGAPG 252
+R + + + EEG + ++ ++ + +A + ++G PG
Sbjct: 253 KGGALPPAKRAKKPEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPG 312
Query: 253 NCGVTAPPG 261
APPG
Sbjct: 313 KGATPAPPG 321
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 37.0 bits (84), Expect = 0.023
Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 11/189 (5%)
Query: 84 GATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPTLGRGR--GVLPARLCRAEIWCLQ 141
G TG P T L SPR+ + + G +PA A+ +
Sbjct: 133 GKTGNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVS 192
Query: 142 FTEA--LSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPPAARKLQPQ- 198
+A SE S + G+ SV+ V + + SP R++ P P + PQ
Sbjct: 193 AGQADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAPGKVGDVTPQV 252
Query: 199 ------EPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLESEGAPG 252
+R + + + EEG + ++ ++ + +A + ++G PG
Sbjct: 253 KGGALPPAKRAKKPEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPG 312
Query: 253 NCGVTAPPG 261
APPG
Sbjct: 313 KGATPAPPG 321
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 37.0 bits (84), Expect = 0.023
Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 11/189 (5%)
Query: 84 GATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPTLGRGR--GVLPARLCRAEIWCLQ 141
G TG P T L SPR+ + + G +PA A+ +
Sbjct: 133 GKTGNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVS 192
Query: 142 FTEA--LSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPPAARKLQPQ- 198
+A SE S + G+ SV+ V + + SP R++ P P + PQ
Sbjct: 193 AGQADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAPGKVGDVTPQV 252
Query: 199 ------EPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLESEGAPG 252
+R + + + EEG + ++ ++ + +A + ++G PG
Sbjct: 253 KGGALPPAKRAKKPEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPG 312
Query: 253 NCGVTAPPG 261
APPG
Sbjct: 313 KGATPAPPG 321
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 37.0 bits (84), Expect = 0.023
Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 11/189 (5%)
Query: 84 GATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPTLGRGR--GVLPARLCRAEIWCLQ 141
G TG P T L SPR+ + + G +PA A+ +
Sbjct: 133 GKTGNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVS 192
Query: 142 FTEA--LSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPPAARKLQPQ- 198
+A SE S + G+ SV+ V + + SP R++ P P + PQ
Sbjct: 193 AGQADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAPGKVGDVTPQV 252
Query: 199 ------EPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLESEGAPG 252
+R + + + EEG + ++ ++ + +A + ++G PG
Sbjct: 253 KGGALPPAKRAKKPEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPG 312
Query: 253 NCGVTAPPG 261
APPG
Sbjct: 313 KGATPAPPG 321
>gi|34335253 disks large-associated protein 4 isoform a [Homo
sapiens]
Length = 989
Score = 35.4 bits (80), Expect = 0.068
Identities = 31/110 (28%), Positives = 41/110 (37%), Gaps = 11/110 (10%)
Query: 207 GTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLESEGAPGNCGV---TAPPGGH 263
G+K+ G E+G+ R K K R K + +RR + + G G + P G
Sbjct: 168 GSKKGGMEDGKGRRAKSKERAKAGEPKRRSRSNISGWWSSDDNLDGEAGAFRSSGPASGL 227
Query: 264 IWL------KQVEVQTHLENRC--HRLKATVTTTTRPGAEPRSPPFIRTC 305
+ L Q H N H LK T TT A P P TC
Sbjct: 228 MTLGRQAERSQPRYFMHAYNTISGHMLKTTKNNTTELTAPPPPPAPPATC 277
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 35.4 bits (80), Expect = 0.068
Identities = 58/242 (23%), Positives = 76/242 (31%), Gaps = 40/242 (16%)
Query: 109 RRRRGQARGAPTLGRGRGVLPARLCRAEIWCLQFTEALSELIRSHPAYQQISGECSVEAL 168
RRR G A GA L R R V R RA+ + + E + P G + A
Sbjct: 7 RRRGGGAAGARLLERYRRVPGVRALRAD------SVLIIETVPGFPPAPPAPGAAQIRAA 60
Query: 169 PVCTAHLPGN------------CSPERRSRPW---------PPAARKLQPQEPRRPRTQG 207
V P +P RR P PPA + P P P G
Sbjct: 61 EVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPPPAPPRPPPAAPSPPAAPG 120
Query: 208 TKEKGKEEG-RKERKKEKVRKKTVDDRRRPQVTFQAVNLESEG--------APGNCGVTA 258
+ G G R+ +K + R L S G P N +
Sbjct: 121 PRGGGASPGARRSDFLQKTGSNSFTVHPRGLHRGAGARLLSNGHSAPEPRAGPANRLAGS 180
Query: 259 PPGGHIWLKQVEVQTHLENRCHRLKATVTTTTRPGAEPRS-PPFIRTCGEIMNVFSDMFI 317
PPG W +VE + H + T + P + P S P R C +D F
Sbjct: 181 PPGSGQWKPKVESG---DPSLHPPPSPGTPSATPASPPASATPSQRQCVSAATSTNDSFE 237
Query: 318 FR 319
R
Sbjct: 238 IR 239
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 35.4 bits (80), Expect = 0.068
Identities = 58/242 (23%), Positives = 76/242 (31%), Gaps = 40/242 (16%)
Query: 109 RRRRGQARGAPTLGRGRGVLPARLCRAEIWCLQFTEALSELIRSHPAYQQISGECSVEAL 168
RRR G A GA L R R V R RA+ + + E + P G + A
Sbjct: 7 RRRGGGAAGARLLERYRRVPGVRALRAD------SVLIIETVPGFPPAPPAPGAAQIRAA 60
Query: 169 PVCTAHLPGN------------CSPERRSRPW---------PPAARKLQPQEPRRPRTQG 207
V P +P RR P PPA + P P P G
Sbjct: 61 EVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPPPAPPRPPPAAPSPPAAPG 120
Query: 208 TKEKGKEEG-RKERKKEKVRKKTVDDRRRPQVTFQAVNLESEG--------APGNCGVTA 258
+ G G R+ +K + R L S G P N +
Sbjct: 121 PRGGGASPGARRSDFLQKTGSNSFTVHPRGLHRGAGARLLSNGHSAPEPRAGPANRLAGS 180
Query: 259 PPGGHIWLKQVEVQTHLENRCHRLKATVTTTTRPGAEPRS-PPFIRTCGEIMNVFSDMFI 317
PPG W +VE + H + T + P + P S P R C +D F
Sbjct: 181 PPGSGQWKPKVESG---DPSLHPPPSPGTPSATPASPPASATPSQRQCVSAATSTNDSFE 237
Query: 318 FR 319
R
Sbjct: 238 IR 239
>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 35.0 bits (79), Expect = 0.089
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 193 RKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRR 235
RK + ++ R+ R + KE+ KE RKER++ K +K ++R++
Sbjct: 178 RKEKERKERKKRERNRKERKKERERKERRERKKERKKKEERKK 220
Score = 31.6 bits (70), Expect = 0.98
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 198 QEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLESEGAPG 252
+E R + + +EK K E KERK+E+ +K+ +R++ + + E E G
Sbjct: 55 RESERKKERREREKRKREREKERKRERGKKEKKGERKKEERERKKRRREKENKEG 109
Score = 31.6 bits (70), Expect = 0.98
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 193 RKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRR 235
+K + +E R +G + + KEE ++E +KE+ RKK ++ R
Sbjct: 116 KKKEKKERGRTSKEGKERERKEERKREERKERERKKEEREKER 158
Score = 30.4 bits (67), Expect = 2.2
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 193 RKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRR 235
RK + +E + + + KE+ +E G+KE+K E+ +++ +RR
Sbjct: 59 RKKERREREKRKREREKERKRERGKKEKKGERKKEERERKKRR 101
Score = 29.6 bits (65), Expect = 3.7
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 182 ERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKK 228
ERR R ++ + +E R R +G KEK E ++ER+++K R++
Sbjct: 62 ERRERE-----KRKREREKERKRERGKKEKKGERKKEERERKKRRRE 103
Score = 29.6 bits (65), Expect = 3.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 193 RKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKK 228
+++ +E R + + K +E RKERKKE+ RK+
Sbjct: 169 KQVGEKEEERKEKERKERKKRERNRKERKKERERKE 204
Score = 28.9 bits (63), Expect = 6.4
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 182 ERRSRPWPPAARKLQPQEPRRPRTQGTK----------EKGKEEGRKERKK-EKVRKKTV 230
ER+ RK + +E R R + K E+ KE+ RKERKK E+ RK+
Sbjct: 138 ERKREERKERERKKEEREKERERKERKKRERKQVGEKEEERKEKERKERKKRERNRKERK 197
Query: 231 DDRRRPQ 237
+R R +
Sbjct: 198 KERERKE 204
>gi|169211906 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 35.0 bits (79), Expect = 0.089
Identities = 46/143 (32%), Positives = 54/143 (37%), Gaps = 28/143 (19%)
Query: 80 TVLKGATGRGFPRKRTPHGAPLR---LQALSPRRRRGQARGAPT-LGRGRGVLPARLCRA 135
T +GA G PR R P GA L S R RR + RG + LG G PAR
Sbjct: 56 TAPRGAQG---PRSRPPLGADTSAPDLSRTSSRCRRRRRRGCVSRLGSEGGRRPAR--HR 110
Query: 136 EIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPPAARKL 195
W A Q+ ECS+ A LP PE R R PAA +L
Sbjct: 111 PTW-------------PRRAEPQVPEECSLPA-----GVLPAQHGPEPRPRGLQPAAHQL 152
Query: 196 QPQEPRRPRTQGTKEKGKEEGRK 218
P E R T + E R+
Sbjct: 153 -PGERGRGSTAAQHPRRNTESRE 174
>gi|169211049 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 35.0 bits (79), Expect = 0.089
Identities = 46/143 (32%), Positives = 54/143 (37%), Gaps = 28/143 (19%)
Query: 80 TVLKGATGRGFPRKRTPHGAPLR---LQALSPRRRRGQARGAPT-LGRGRGVLPARLCRA 135
T +GA G PR R P GA L S R RR + RG + LG G PAR
Sbjct: 56 TAPRGAQG---PRSRPPLGADTSAPDLSRTSSRCRRRRRRGCVSRLGSEGGRRPAR--HR 110
Query: 136 EIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPPAARKL 195
W A Q+ ECS+ A LP PE R R PAA +L
Sbjct: 111 PTW-------------PRRAEPQVPEECSLPA-----GVLPAQHGPEPRPRGLQPAAHQL 152
Query: 196 QPQEPRRPRTQGTKEKGKEEGRK 218
P E R T + E R+
Sbjct: 153 -PGERGRGSTAAQHPRRNTESRE 174
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 34.3 bits (77), Expect = 0.15
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 183 RRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQA 242
RR+RP PP R P+ PRRPR T + GR + RRP T Q
Sbjct: 149 RRARP-PPVPRLPAPRAPRRPRGPATPDPSPPAGRPHGPAGRAA-----PGRRPGCTAQ- 201
Query: 243 VNLESEGAPGNCGVTAPPGG 262
L + G G + PGG
Sbjct: 202 --LRAPGRRGRQRLLVHPGG 219
>gi|155029548 phosphofurin acidic cluster sorting protein 2 isoform
1 [Homo sapiens]
Length = 893
Score = 34.3 bits (77), Expect = 0.15
Identities = 25/91 (27%), Positives = 35/91 (38%)
Query: 151 RSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPPAARKLQPQEPRRPRTQGTKE 210
R HP + S E L V T LP + + P+ R Q RR R+ KE
Sbjct: 381 REHPGQPEDSPEAEASTLDVFTERLPPSGRITKTESLVIPSTRSEGKQAGRRGRSTSLKE 440
Query: 211 KGKEEGRKERKKEKVRKKTVDDRRRPQVTFQ 241
+ + ER ++ D R + QV Q
Sbjct: 441 RQAARPQNERANSLDNERCPDARSQLQVQLQ 471
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 34.3 bits (77), Expect = 0.15
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 172 TAHLPGNCSPERRSR-----------PWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKER 220
TA + S ERR R P P + + PRR + + K+K KE R ER
Sbjct: 332 TARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDER 391
Query: 221 KKEKVRKKTVDDRRR 235
++ +KK D+ +
Sbjct: 392 ERSTSKKKKSKDKEK 406
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 34.3 bits (77), Expect = 0.15
Identities = 39/148 (26%), Positives = 52/148 (35%), Gaps = 3/148 (2%)
Query: 88 RGFPRKRTPHGAPLRLQALSPRRRRGQARGAPTLGRGRGVLPARLCRAEIWCLQFTEALS 147
R R +P P + SPRRR R P R P R R L + + S
Sbjct: 303 RSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSS 362
Query: 148 ELIRSHPAYQQISGECSVEALPVCTAHL-PGNCSPERRSRPWPPAARKLQPQEPRRPRTQ 206
RS ++ S + P T L P P RR RP PPA + + P+
Sbjct: 363 SSSRSRSPPKKPPKRTS--SPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQS 420
Query: 207 GTKEKGKEEGRKERKKEKVRKKTVDDRR 234
K + R KV K ++R
Sbjct: 421 NRTRKSRVSVSPGRTSGKVTKHKGTEKR 448
Score = 29.3 bits (64), Expect = 4.9
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 181 PERRSRPWPPAARKLQPQEPRRPRTQG-TKEKGKEEGRKERKKEKVRKKTVDDRRRPQ 237
P+RR+ P PP R++ P + R+ TK + K RK + T + R PQ
Sbjct: 621 PKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRST-REARSPQ 677
Score = 28.9 bits (63), Expect = 6.4
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 152 SHPAYQQISGECSVEALPVCTAHLP-GNCSPERRSRP---WPPAA--RKLQ-----PQEP 200
S + +++S SV P A P SP + P W PA +K + P P
Sbjct: 740 SPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPP 799
Query: 201 RRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQA 242
R +G +K K++ K+ KK+K KK ++ V A
Sbjct: 800 RNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKEKAVAAAA 841
Score = 28.5 bits (62), Expect = 8.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 180 SPERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVR 226
S E+R R P RK + PRR + +E+ + R R + K R
Sbjct: 162 SREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSR 208
>gi|239757964 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 33.5 bits (75), Expect = 0.26
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 202 RPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRR 234
R R + KE+ K+E +KERKKE+ KK + RR
Sbjct: 245 RDRERDRKEERKKERKKERKKERKEKKKEEKRR 277
Score = 30.8 bits (68), Expect = 1.7
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 198 QEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRR 235
++ R R + K++ K+E +KERK++K +K +D++R
Sbjct: 245 RDRERDRKEERKKERKKERKKERKEKKKEEKRREDKKR 282
>gi|169213977 PREDICTED: hypothetical protein [Homo sapiens]
Length = 277
Score = 33.5 bits (75), Expect = 0.26
Identities = 44/146 (30%), Positives = 59/146 (40%), Gaps = 33/146 (22%)
Query: 84 GATGRGFPRKRTPH-------GAPLRLQALSPRRRRGQARGAPT-LGRGRGVLPARLCRA 135
G+TGRG P R+PH G P ++LSPR G T +GR +R CR
Sbjct: 66 GSTGRGGPNARSPHPLGPAGAGVP---RSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRC 122
Query: 136 EIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRP-----WPP 190
CL +A S +S P Y Q+ G LP P +R + W
Sbjct: 123 ---CL--GDAASPWAQSLP-YTQVQGG---------RGFLPEEVGPHQRGQEGAGTGWGD 167
Query: 191 AARKLQPQEPRRPRTQGTKE--KGKE 214
A + P P G++E +GKE
Sbjct: 168 ATLSRRNCTPTPPYAGGSREPARGKE 193
>gi|169214385 PREDICTED: hypothetical protein [Homo sapiens]
Length = 277
Score = 33.5 bits (75), Expect = 0.26
Identities = 44/146 (30%), Positives = 59/146 (40%), Gaps = 33/146 (22%)
Query: 84 GATGRGFPRKRTPH-------GAPLRLQALSPRRRRGQARGAPT-LGRGRGVLPARLCRA 135
G+TGRG P R+PH G P ++LSPR G T +GR +R CR
Sbjct: 66 GSTGRGGPNARSPHPLGPAGAGVP---RSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRC 122
Query: 136 EIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRP-----WPP 190
CL +A S +S P Y Q+ G LP P +R + W
Sbjct: 123 ---CL--GDAASPWAQSLP-YTQVQGG---------RGFLPEEVGPHQRGQEGAGTGWGD 167
Query: 191 AARKLQPQEPRRPRTQGTKE--KGKE 214
A + P P G++E +GKE
Sbjct: 168 ATLSRRNCTPTPPYAGGSREPARGKE 193
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 33.5 bits (75), Expect = 0.26
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 13/62 (20%)
Query: 182 ERRSRPWPPAARKLQPQEPRRPRTQGTKEK--------GKEEGRKERKKEKVRKKTVDDR 233
ERR R ++ + +E R R +G KEK GKE RK +++EK RK+ +
Sbjct: 39 ERRERE-----KRKREREKERKRERGKKEKKKRKKRERGKERERKRKEREKQRKERREKE 93
Query: 234 RR 235
RR
Sbjct: 94 RR 95
Score = 33.1 bits (74), Expect = 0.34
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 164 SVEALPVCTAHLPGNCSPERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKE 223
+ E V +H+ C+ +R S RK + +E + + + KE+ +E G+KE+KK
Sbjct: 14 NTELQMVSCSHISKPCT-QRESE------RKKERREREKRKREREKERKRERGKKEKKKR 66
Query: 224 KVRKKTVDDRRR 235
K R++ + R+
Sbjct: 67 KKRERGKERERK 78
Score = 33.1 bits (74), Expect = 0.34
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 182 ERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKK 228
ER+ + ++ + +E R+ + + K + K+ GR+ERKK+K RK+
Sbjct: 76 ERKRKEREKQRKERREKERRKRKKEKKKRERKQRGRRERKKKKERKE 122
Score = 33.1 bits (74), Expect = 0.34
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 182 ERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEE-GRKERKKEKVRKKTVDDRR 234
ER ++ RK + ++ RR + KE+GK E RK+RKKE+ KK +R+
Sbjct: 124 ERENKQRRERKRKKRRKKKRRKERKREKERGKRERKRKKRKKEEREKKRERNRK 177
Score = 32.3 bits (72), Expect = 0.58
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 198 QEPRRPRTQGTKEKGKEEGRKERKKEKVRKK 228
+ R+ R + +EK +E RKERKKE+ RK+
Sbjct: 157 ERKRKKRKKEEREKKRERNRKERKKERERKE 187
Score = 32.0 bits (71), Expect = 0.75
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 193 RKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRR 235
RK + +E ++ R + K++ K++ RKERK+EK R K R++
Sbjct: 120 RKERERENKQRRERKRKKRRKKKRRKERKREKERGKRERKRKK 162
Score = 31.6 bits (70), Expect = 0.98
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 182 ERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKE---RKKEKVRKKTVDDRRRPQ 237
+RR R +K + +E +R + +G +E+ +++ +KE +K+E+ RK+ +R R +
Sbjct: 129 QRRERKRKKRRKKKRRKERKREKERGKRERKRKKRKKEEREKKRERNRKERKKERERKE 187
Score = 31.6 bits (70), Expect = 0.98
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 182 ERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKE-----EGRKERKKEKVRKK 228
ER R RK + +E +R R + ++K +E E +KERKKE+ +KK
Sbjct: 152 ERGKRERKRKKRKKEEREKKRERNRKERKKERERKERRERKKERKKERRKKK 203
Score = 31.2 bits (69), Expect = 1.3
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 182 ERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRR 235
ER+ R +K + +E R Q + K K+ +K+R+KE+ R+K R R
Sbjct: 105 ERKQRGRRERKKKKERKERERENKQRRERKRKKRRKKKRRKERKREKERGKRER 158
Score = 29.3 bits (64), Expect = 4.9
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
Query: 193 RKLQPQEPRRPRTQ-GTKEKGKEEGRKER------KKEKVRKKTVDDRRRPQ 237
RK + ++ +R R Q G +E+ K++ RKER ++E+ RKK +RR +
Sbjct: 95 RKRKKEKKKRERKQRGRRERKKKKERKERERENKQRRERKRKKRRKKKRRKE 146
Score = 28.5 bits (62), Expect = 8.3
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 182 ERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRR 235
ERR R R+ + Q RR R + + K +E K+R++ K +K+ RR+
Sbjct: 93 ERRKRKKEKKKRE-RKQRGRRERKKKKERKERERENKQRRERKRKKRRKKKRRK 145
>gi|169213314 PREDICTED: hypothetical protein [Homo sapiens]
Length = 277
Score = 33.5 bits (75), Expect = 0.26
Identities = 44/146 (30%), Positives = 59/146 (40%), Gaps = 33/146 (22%)
Query: 84 GATGRGFPRKRTPH-------GAPLRLQALSPRRRRGQARGAPT-LGRGRGVLPARLCRA 135
G+TGRG P R+PH G P ++LSPR G T +GR +R CR
Sbjct: 66 GSTGRGGPNARSPHPLGPAGAGVP---RSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRC 122
Query: 136 EIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRP-----WPP 190
CL +A S +S P Y Q+ G LP P +R + W
Sbjct: 123 ---CL--GDAASPWAQSLP-YTQVQGG---------RGFLPEEVGPHQRGQEGAGTGWGD 167
Query: 191 AARKLQPQEPRRPRTQGTKE--KGKE 214
A + P P G++E +GKE
Sbjct: 168 ATLSRRNCTPTPPYAGGSREPARGKE 193
>gi|221316599 chromogranin B precursor [Homo sapiens]
Length = 677
Score = 33.5 bits (75), Expect = 0.26
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 197 PQEPR-RPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLESE 248
PQE + +PR+Q E+G+E+ E K + R + R RP + Q +L SE
Sbjct: 250 PQESKGQPRSQEESEEGEEDATSEVDKRRTRPRHHHGRSRPDRSSQGGSLPSE 302
>gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 33.1 bits (74), Expect = 0.34
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 174 HLPGNCSPERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDR 233
HLP + P+R + K + +E ++ + + K+K K++ +K++KK+K +KK R
Sbjct: 93 HLPLHGLPQREEK-------KEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKR 145
Query: 234 RR 235
+R
Sbjct: 146 KR 147
>gi|6912246 CD3E antigen, epsilon polypeptide associated protein
[Homo sapiens]
Length = 510
Score = 33.1 bits (74), Expect = 0.34
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Query: 161 GECSVEALPVCTAHLPGNCSPERRSRPWPPAARKLQPQEPRRPRTQGTKE---------- 210
G E + LPG PE R+ P RK Q QE R P T +E
Sbjct: 431 GHTVTEPIQPLEPELPGEGQPEARATPGSTKKRKKQSQESRMPETVPQEEMPGPPLNSES 490
Query: 211 -----KGKEEGRKERKKEKV 225
G+++ RK+++++ V
Sbjct: 491 GEEAPTGRDKKRKQQQQQPV 510
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 33.1 bits (74), Expect = 0.34
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 189 PPAARKLQPQEPRRPRTQGTKEKGKE-------EGRKERKKEKVRKKTVDDRRRPQVTFQ 241
P RK +P+EP+ PR +K KE +G K+ +K + T + + + T
Sbjct: 116 PKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDS 175
Query: 242 AVNLESEGAPGNCGVT 257
A +S A G T
Sbjct: 176 AARTKSRKASKEQGPT 191
>gi|120953300 leucine-rich repeats and IQ motif containing 1 isoform
1 [Homo sapiens]
Length = 1722
Score = 33.1 bits (74), Expect = 0.34
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 180 SPERRSRPWPPAARKLQPQEPRR-------PRTQGTKEKGKEEGRKERKKEKVRKKTVDD 232
S +R+++ W K++ +E R + ++K KEE RK R+KE KK +
Sbjct: 313 SKKRKAQEWKEKEAKIRQKEEENRKRLEEEQRIKEERKKQKEEERKRREKEYEEKKNIVK 372
Query: 233 RRRPQV 238
+ R Q+
Sbjct: 373 QEREQL 378
>gi|120953243 leucine-rich repeats and IQ motif containing 1 isoform
2 [Homo sapiens]
Length = 1336
Score = 33.1 bits (74), Expect = 0.34
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 180 SPERRSRPWPPAARKLQPQEPRR-------PRTQGTKEKGKEEGRKERKKEKVRKKTVDD 232
S +R+++ W K++ +E R + ++K KEE RK R+KE KK +
Sbjct: 313 SKKRKAQEWKEKEAKIRQKEEENRKRLEEEQRIKEERKKQKEEERKRREKEYEEKKNIVK 372
Query: 233 RRRPQV 238
+ R Q+
Sbjct: 373 QEREQL 378
>gi|155029546 phosphofurin acidic cluster sorting protein 2 isoform
2 [Homo sapiens]
Length = 889
Score = 32.7 bits (73), Expect = 0.44
Identities = 24/93 (25%), Positives = 36/93 (38%)
Query: 151 RSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPPAARKLQPQEPRRPRTQGTKE 210
R HP + S E L V T LP + + P+ R Q RR R+ KE
Sbjct: 381 REHPGQPEDSPEAEASTLDVFTERLPPSGRITKTESLVIPSTRSEGKQAGRRGRSTSLKE 440
Query: 211 KGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAV 243
+ + ER ++ D R + Q+ + V
Sbjct: 441 RQAARPQNERANSLDNERCPDARSQLQIPRKTV 473
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,214,087
Number of Sequences: 37866
Number of extensions: 828994
Number of successful extensions: 6106
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 5315
Number of HSP's gapped (non-prelim): 729
length of query: 320
length of database: 18,247,518
effective HSP length: 102
effective length of query: 218
effective length of database: 14,385,186
effective search space: 3135970548
effective search space used: 3135970548
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.