Guide to the Human Genome
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Name: LOC100131973 Sequence: fasta or formatted (490aa) NCBI GI: 239754614
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {320aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.1         64           3
 C cysteine            3.7         18           2
 D aspartate           1.6          8           2
 E glutamate           5.3         26           3
 F phenylalanine       3.5         17           1
 G glycine             8.2         40           2
 H histidine           2.2         11           1
 I isoleucine          2.0         10           1
 K lysine              3.7         18           2
 L leucine             8.0         39           3
 M methionine          1.0          5           1
 N asparagine          1.2          6           1
 P proline            10.0         49           4
 Q glutamine           4.3         21           2
 R arginine           11.0         54           4
 S serine              6.9         34           2
 T threonine           7.3         36           4
 V valine              4.1         20           1
 W tryptophan          2.0         10           1
 Y tyrosine            0.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131973          0.644   PREDICTED: hypothetical protein 
LOC440829             0.014   PREDICTED: transmembrane protein 46-like 
TBC1D10B              0.013   TBC1 domain family, member 10B 
RP1L1                 0.012   retinitis pigmentosa 1-like 1 
TCOF1                 0.012   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.012   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.012   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.012   Treacher Collins-Franceschetti syndrome 1 isoform c ...
LOC100132062          0.011   PREDICTED: hypothetical protein 
LOC100132287          0.011   PREDICTED: hypothetical protein 
LOC100133161          0.010   PREDICTED: hypothetical protein 
LOC100132062          0.010   PREDICTED: hypothetical protein 
LOC100133599          0.010   PREDICTED: hypothetical protein 
LOC100131091          0.010   PREDICTED: hypothetical protein 
LOC100131091          0.010   PREDICTED: hypothetical protein 
LOC100293275          0.010   PREDICTED: hypothetical protein 
LOC100294378          0.010   PREDICTED: hypothetical protein 
DLGAP4                0.010   disks large-associated protein 4 isoform a 
LRRIQ1                0.010   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.010   leucine-rich repeats and IQ motif containing 1 isof...
PACS2                 0.009   phosphofurin acidic cluster sorting protein 2 isofo...
SFRS11                0.009   splicing factor, arginine/serine-rich 11 
PHRF1                 0.009   PHD and ring finger domains 1 
NACA                  0.009   nascent polypeptide-associated complex alpha subuni...
LOC283999             0.008   hypothetical protein LOC283999 
HOXA13                0.008   homeobox A13 
LOC100131202          0.008   PREDICTED: hypothetical protein 
LOC100128528          0.008   PREDICTED: hypothetical protein 
LOC100291061          0.008   PREDICTED: hypothetical protein XP_002348193 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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