Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131973 Sequence: fasta or formatted (320aa) NCBI GI: 239743215
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {490aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         30           2
 C cysteine            3.4         11           2
 D aspartate           1.6          5           2
 E glutamate           5.6         18           2
 F phenylalanine       4.4         14           1
 G glycine             9.1         29           2
 H histidine           2.2          7           1
 I isoleucine          2.5          8           1
 K lysine              4.7         15           2
 L leucine             8.4         27           3
 M methionine          0.9          3           1
 N asparagine          1.6          5           1
 P proline             9.4         30           2
 Q glutamine           4.4         14           2
 R arginine           12.5         40           4
 S serine              5.3         17           1
 T threonine           7.2         23           4
 V valine              5.0         16           1
 W tryptophan          1.9          6           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131973          0.994   PREDICTED: hypothetical protein 
TBC1D10B              0.019   TBC1 domain family, member 10B 
RP1L1                 0.019   retinitis pigmentosa 1-like 1 
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform c ...
DLGAP4                0.016   disks large-associated protein 4 isoform a 
C9orf75               0.016   hypothetical protein LOC286262 isoform 2 
C9orf75               0.016   hypothetical protein LOC286262 isoform 1 
LOC100133599          0.016   PREDICTED: hypothetical protein 
LOC100131091          0.016   PREDICTED: hypothetical protein 
LOC100131091          0.016   PREDICTED: hypothetical protein 
LOC283999             0.014   hypothetical protein LOC283999 
PACS2                 0.014   phosphofurin acidic cluster sorting protein 2 isofo...
SFRS11                0.014   splicing factor, arginine/serine-rich 11 
SRRM1                 0.014   serine/arginine repetitive matrix 1 
LOC100131202          0.012   PREDICTED: hypothetical protein 
LOC100128528          0.012   PREDICTED: hypothetical protein 
LOC100128528          0.012   PREDICTED: hypothetical protein 
LOC100133599          0.012   PREDICTED: hypothetical protein 
LOC100128528          0.012   PREDICTED: hypothetical protein 
CHGB                  0.012   chromogranin B precursor 
LOC100294364          0.012   PREDICTED: hypothetical protein 
CD3EAP                0.012   CD3E antigen, epsilon polypeptide associated protein ...
CHD6                  0.012   chromodomain helicase DNA binding protein 6 
LRRIQ1                0.012   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.012   leucine-rich repeats and IQ motif containing 1 isof...
PACS2                 0.012   phosphofurin acidic cluster sorting protein 2 isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press