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Search of human proteins with 239743025
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743025 PREDICTED: hypothetical protein [Homo sapiens]
(178 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749005 PREDICTED: hypothetical protein [Homo sapiens] 379 e-106
gi|239743025 PREDICTED: hypothetical protein [Homo sapiens] 379 e-106
gi|169169912 PREDICTED: hypothetical protein [Homo sapiens] 358 2e-99
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 49 3e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 49 3e-06
gi|33188461 GATA binding protein 4 [Homo sapiens] 47 1e-05
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 47 1e-05
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 47 1e-05
gi|19924097 synapsin I isoform Ib [Homo sapiens] 45 3e-05
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 44 6e-05
gi|19924099 synapsin I isoform Ia [Homo sapiens] 44 6e-05
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 44 7e-05
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 44 7e-05
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 44 7e-05
gi|239757232 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|239751740 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo ... 44 1e-04
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 43 2e-04
gi|239756849 PREDICTED: hypothetical protein [Homo sapiens] 42 3e-04
gi|239751345 PREDICTED: hypothetical protein XP_002347810 [Homo ... 42 3e-04
gi|239745844 PREDICTED: hypothetical protein XP_002343563 [Homo ... 42 3e-04
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 41 5e-04
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 41 5e-04
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens] 41 5e-04
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 41 5e-04
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 41 6e-04
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 41 6e-04
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 41 6e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 40 8e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 40 8e-04
>gi|239749005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 379 bits (973), Expect = e-106
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MTPRPTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRV 60
MTPRPTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRV
Sbjct: 1 MTPRPTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRV 60
Query: 61 PAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAG 120
PAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAG
Sbjct: 61 PAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAG 120
Query: 121 APGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEEA 178
APGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEEA
Sbjct: 121 APGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEEA 178
>gi|239743025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 379 bits (973), Expect = e-106
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MTPRPTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRV 60
MTPRPTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRV
Sbjct: 1 MTPRPTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRV 60
Query: 61 PAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAG 120
PAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAG
Sbjct: 61 PAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAG 120
Query: 121 APGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEEA 178
APGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEEA
Sbjct: 121 APGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEEA 178
>gi|169169912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 358 bits (918), Expect = 2e-99
Identities = 168/169 (99%), Positives = 169/169 (100%)
Query: 10 PTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVC 69
P+APAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVC
Sbjct: 16 PSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVC 75
Query: 70 AGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALS 129
AGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALS
Sbjct: 76 AGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALS 135
Query: 130 PGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEEA 178
PGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEEA
Sbjct: 136 PGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEEA 184
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 48.5 bits (114), Expect = 3e-06
Identities = 54/173 (31%), Positives = 64/173 (36%), Gaps = 16/173 (9%)
Query: 4 RPTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG-AARGGTGRVPA 62
R +P +PG+ GR G+ L G S D + GP G A + G P
Sbjct: 511 RGSPGPAGPKGSPGEAGRPGEAGLPGAK-GLTGSPGSPGPDGKTGPPGPAGQDGRPGPPG 569
Query: 63 PPRACVCAG--SWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATA-- 118
PP A AG + G G A A V GP GPA G+ PGPA
Sbjct: 570 PPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAG 629
Query: 119 -------AGAPGFSRALSPGPV-PPGWRAAPRAGAPHQRAAATGSGGSRSVGG 163
AG+PGF PGP PPG P A G G+R G
Sbjct: 630 ERGEQGPAGSPGFQGL--PGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG 680
Score = 42.4 bits (98), Expect = 2e-04
Identities = 54/173 (31%), Positives = 60/173 (34%), Gaps = 29/173 (16%)
Query: 1 MTPRPTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRV 60
M PR P + P APG G G+ T GA GP G G
Sbjct: 301 MGPRGLPGERGRPGAPGPAGARGNDGAT----GAA------------GPPGPT--GPAGP 342
Query: 61 PAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGP--QAGPACGFRALGSAQSPGPATA 118
P P A G R + P G PGP AGPA A G + G A
Sbjct: 343 PGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGA 402
Query: 119 ---AGAPGFSRALSP-GPVPPGWRAAPRA-----GAPHQRAAATGSGGSRSVG 162
AGAPGF A P GP PG P+ GAP + G VG
Sbjct: 403 PGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVG 455
Score = 42.4 bits (98), Expect = 2e-04
Identities = 53/182 (29%), Positives = 64/182 (35%), Gaps = 47/182 (25%)
Query: 9 QPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAA----RGGTGRVPAPP 64
+P P PG RG+ G + GP GAA + G VP PP
Sbjct: 564 RPGPPGPPGARGQAGVMGFP-------------------GPKGAAGEPGKAGERGVPGPP 604
Query: 65 RACVCAGSWQGHLG-------------RAARVPCASHTHVGGPGP-----QAGPACGFRA 106
A AG G G R + P S G PGP +AG
Sbjct: 605 GAVGPAGK-DGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGV 663
Query: 107 LGSAQSPGPATAAGAPGF--SRALS--PGPV-PPGWRAAPRAGAPHQRAAATGSGGSRSV 161
G +PGP+ A G GF R + PGP P G AP A A G+ GS+
Sbjct: 664 PGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGA 723
Query: 162 GG 163
G
Sbjct: 724 PG 725
Score = 39.3 bits (90), Expect = 0.002
Identities = 47/165 (28%), Positives = 59/165 (35%), Gaps = 17/165 (10%)
Query: 13 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 72
P PG+RG G R + + G + A+G G PA P+ +
Sbjct: 238 PGRPGERGPPGPQGA--RGLPGTAGLPGMKGHRGFSGLDGAKGDAG--PAGPKGEPGSPG 293
Query: 73 WQGHLGRAA-RVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRAL--- 128
G G+ R G PGP AG A G+A PGP AG PGF A+
Sbjct: 294 ENGAPGQMGPRGLPGERGRPGAPGP-AGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAK 352
Query: 129 -SPGPV-------PPGWRAAPRAGAPHQRAAATGSGGSRSVGGGK 165
GP P G R P P A G+ G+ G K
Sbjct: 353 GEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAK 397
Score = 35.4 bits (80), Expect = 0.026
Identities = 47/161 (29%), Positives = 51/161 (31%), Gaps = 38/161 (23%)
Query: 12 APAAPGQRGRGGDISLT-HRTVGALPSVARSWGDLQWGPCGA--------ARGGTGRVPA 62
AP APG +G G + R LP GD GP GA RG TG +
Sbjct: 714 APGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDA--GPKGADGSPGKDGVRGLTGPIGP 771
Query: 63 PPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAP 122
P A G G + GP AGP A G PGP AG
Sbjct: 772 PGPAGA-----PGDKGES------------GPSGPAGPTGARGAPGDRGEPGPPGPAGFA 814
Query: 123 GFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGG 163
G PPG P A A A G G G
Sbjct: 815 G----------PPGADGQPGAKGEPGDAGAKGDAGPPGPAG 845
Score = 35.4 bits (80), Expect = 0.026
Identities = 50/170 (29%), Positives = 59/170 (34%), Gaps = 23/170 (13%)
Query: 12 APAAPGQRGRGGDISLT-------HRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPP 64
AP PG +G G + R LP + G + GP GA+ G P P
Sbjct: 945 APGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPG--KQGPSGAS--GERGPPGPM 1000
Query: 65 RACVCAGSWQGHLGRAARVPC-ASHTHVGGPGP-----QAGPACGFRALGSAQSPGPATA 118
AG G GR S G PG + GPA A G+ +PGP
Sbjct: 1001 GPPGLAGP-PGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGP 1059
Query: 119 AGAPGFSRALSP----GPV-PPGWRAAPRAGAPHQRAAATGSGGSRSVGG 163
AG G P GPV P G R P TG G R + G
Sbjct: 1060 AGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKG 1109
Score = 34.7 bits (78), Expect = 0.044
Identities = 51/162 (31%), Positives = 58/162 (35%), Gaps = 36/162 (22%)
Query: 13 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDL-QWGPCGAAR--GGTGRVPAP----PR 65
P A GQ G G+ P A + GD GP G A G G V AP R
Sbjct: 817 PGADGQPGAKGE-----------PGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR 865
Query: 66 ACVCAGSWQGHLGRAARV-PCASHTHVGGPGP--------------QAGPACGFRALGSA 110
G G A RV P + G PGP + GPA +G
Sbjct: 866 GSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPP 925
Query: 111 QSPGPATAAGAPGF-SRALSPGPVPPGWRAAPR--AGAPHQR 149
PGPA G+PG A +PG P A R G P QR
Sbjct: 926 GPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQR 967
Score = 33.9 bits (76), Expect = 0.076
Identities = 50/170 (29%), Positives = 54/170 (31%), Gaps = 37/170 (21%)
Query: 7 PRQPTAPA-APGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG--AARGGTGR--VP 61
P P PA APG +G G PS GP G ARG G P
Sbjct: 768 PIGPPGPAGAPGDKGESG------------PS----------GPAGPTGARGAPGDRGEP 805
Query: 62 APPRACVCAG--------SWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSP 113
PP AG +G G A A GP GP A G+ +
Sbjct: 806 GPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR 865
Query: 114 GPATAAGAPGFSRALS-PGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVG 162
G A GA GF A GP P A P G P G G G
Sbjct: 866 GSAGPPGATGFPGAAGRVGPPGPSGNAGP-PGPPGPAGKEGGKGPRGETG 914
Score = 33.1 bits (74), Expect = 0.13
Identities = 51/167 (30%), Positives = 55/167 (32%), Gaps = 37/167 (22%)
Query: 3 PRPTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG--AARGGTGRV 60
P P P AP APG G G T A P+ GP G ARG G
Sbjct: 1041 PAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPA----------GPVGPVGARGPAG-- 1088
Query: 61 PAPPRACVCAGSWQGHLG-------RAARVPCASHTHVGGPGPQ--AGPACGFRALGSAQ 111
P PR QG G + P G GP +GPA GSA
Sbjct: 1089 PQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAG 1148
Query: 112 SPGPATAAGAPG-------FSRALSPGPV-------PPGWRAAPRAG 144
+PG G PG R GPV PPG P AG
Sbjct: 1149 APGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAG 1195
Score = 30.0 bits (66), Expect = 1.1
Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 92 GGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAA 151
G PGP AGP A G+ + G A A GAPG A +P AA G R
Sbjct: 689 GPPGP-AGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGD 747
Query: 152 ATGSGGSRSVG 162
A G S G
Sbjct: 748 AGPKGADGSPG 758
Score = 29.6 bits (65), Expect = 1.4
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 92 GGPGPQAGPACGFRA-----LGSAQSPGPATAAGAPGFSRALSPG----PVPPGWRAAPR 142
GGPG + P A G SPGPA G+PG A PG P G +P
Sbjct: 488 GGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPG--EAGRPGEAGLPGAKGLTGSPG 545
Query: 143 AGAPHQRAAATGSGG 157
+ P + G G
Sbjct: 546 SPGPDGKTGPPGPAG 560
Score = 29.3 bits (64), Expect = 1.9
Identities = 44/155 (28%), Positives = 54/155 (34%), Gaps = 28/155 (18%)
Query: 7 PRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWG----PCGAARGGTGRVPA 62
P P P PG G GG+ + P ++ + + G P G +P
Sbjct: 141 PGPPGPPGPPGPPGLGGNFA---------PQLSYGYDEKSTGGISVPGPMGPSGPRGLPG 191
Query: 63 PPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAP 122
PP A G +QG G P AS G GP+ P G G AG P
Sbjct: 192 PPGAPGPQG-FQGPPGEPGE-PGAS----GPMGPRGPP-------GPPGKNGDDGEAGKP 238
Query: 123 GFSRALSPGPVPPGWRAAP-RAGAPHQRAAATGSG 156
G P P P G R P AG P + SG
Sbjct: 239 GRPGERGP-PGPQGARGLPGTAGLPGMKGHRGFSG 272
Score = 27.7 bits (60), Expect = 5.4
Identities = 49/183 (26%), Positives = 57/183 (31%), Gaps = 31/183 (16%)
Query: 4 RPTPRQPTAPAAPGQRGR-GGDISLTHRTVGALPSVARSWG-DLQWGPCGAARGGTGRVP 61
R P P A G G G D + P +A + G GP G G G P
Sbjct: 370 RGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQ--GPGGPP 427
Query: 62 APPRACVCAGSWQGHLGRAARVPCASHTHVGG-PGPQA-----GPACGFRALGSAQSPGP 115
P +G+ G T G PGP GPA G+ PGP
Sbjct: 428 GP----------KGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGP 477
Query: 116 ATAAGAPG-----FSRALS-----PGPV-PPGWRAAPRAGAPHQRAAATGSGGSRSVGGG 164
G PG SR GP P G R +P P G G + G
Sbjct: 478 TGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGA 537
Query: 165 KHL 167
K L
Sbjct: 538 KGL 540
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 48.5 bits (114), Expect = 3e-06
Identities = 56/182 (30%), Positives = 61/182 (33%), Gaps = 41/182 (22%)
Query: 7 PRQPTAPAAP-------GQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAA--RGGT 57
PR PT P P G +G GG LP +A GP G+ RG T
Sbjct: 760 PRGPTGPIGPPGPAGQPGDKGEGG--------APGLPGIA--------GPRGSPGERGET 803
Query: 58 GRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALG--------- 108
G P P A G G GGP AGP G G
Sbjct: 804 G--PPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKG 861
Query: 109 SAQSPGPATAAGAPGFSRALSP-----GPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGG 163
SPG AAG PG P P PPG +P P A TG+ GS V G
Sbjct: 862 ERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSG 921
Query: 164 GK 165
K
Sbjct: 922 PK 923
Score = 45.4 bits (106), Expect = 3e-05
Identities = 51/160 (31%), Positives = 62/160 (38%), Gaps = 24/160 (15%)
Query: 5 PTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPP 64
P P P APG+RGR G LP A + G+ ARG G+ P PP
Sbjct: 296 PGPMGPRG--APGERGRPG-----------LPGAAGARGN------DGARGSDGQ-PGPP 335
Query: 65 RACVCAGSWQGHLGRAARV-PCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPG 123
AG + G G V P S G PG + P A G+ PGP G+PG
Sbjct: 336 GPPGTAG-FPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHA-GAQGPPGPPGINGSPG 393
Query: 124 FSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGG 163
+ P + PG A P A A G+ G R G
Sbjct: 394 GKGEMGPAGI-PGAPGLMGARGPPGPAGANGAPGLRGGAG 432
Score = 37.4 bits (85), Expect = 0.007
Identities = 45/153 (29%), Positives = 57/153 (37%), Gaps = 34/153 (22%)
Query: 15 APGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG--AARGGTGRVPAPPRACVCAGS 72
APG++G GG + G+ P+ GP G +G G P P A G+
Sbjct: 829 APGEKGEGGPPGVAGPPGGSGPA----------GPPGPQGVKGERGS-PGGPGAAGFPGA 877
Query: 73 WQGHLGRAARVPCASHTHVGGPGPQA--------GPACGFRALGSAQSPGPATAAGAPGF 124
R P S+ + G PGP GPA A GS GP AG PG
Sbjct: 878 ------RGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGE 931
Query: 125 SRALSPGPVPPGWRAAPRAGAPHQRAAATGSGG 157
+ PG + P A P A TG+ G
Sbjct: 932 KGS-------PGAQGPPGAPGPLGIAGITGARG 957
Score = 35.8 bits (81), Expect = 0.020
Identities = 27/74 (36%), Positives = 29/74 (39%), Gaps = 14/74 (18%)
Query: 90 HVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQR 149
H G PGP GPA G GPA AGAPG P G R AP P
Sbjct: 1048 HPGPPGP-VGPA---GKSGDRGESGPAGPAGAPG----------PAGSRGAPGPQGPRGD 1093
Query: 150 AAATGSGGSRSVGG 163
TG G+ + G
Sbjct: 1094 KGETGERGAAGIKG 1107
Score = 34.7 bits (78), Expect = 0.044
Identities = 50/176 (28%), Positives = 56/176 (31%), Gaps = 29/176 (16%)
Query: 12 APAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARG-GTGRVPAPPRACVCA 70
AP APG +G G + R L G GP G G G P PP A
Sbjct: 667 APGAPGGKGDAG--APGERGPPGLAGAPGLRGGA--GPPGPEGGKGAAGPPGPPGAAGTP 722
Query: 71 GSWQGHLGRAARV----PCASHTHVGGPGPQA--------GPACGFRALGSAQSPGPATA 118
G QG G + P GGPG GP G A PG
Sbjct: 723 GL-QGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGE 781
Query: 119 AGAPGFSRAL----SPG-------PVPPGWRAAPRAGAPHQRAAATGSGGSRSVGG 163
GAPG SPG P P G+ AP G+ G + GG
Sbjct: 782 GGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGG 837
Score = 33.1 bits (74), Expect = 0.13
Identities = 51/169 (30%), Positives = 59/169 (34%), Gaps = 28/169 (16%)
Query: 13 PAAPGQRGR-GGDISLTHRTVGALPSVARSWGDLQWGPCGA-----ARGGTGRVPAPPRA 66
P PG G GG + + P + + G GP GA RGG G P A
Sbjct: 383 PGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPP--GPAGANGAPGLRGGAGE-PGKNGA 439
Query: 67 CVCAGSWQGHLGRAA--RVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGF 124
G +G G A VP A G G P G+ PG A GAPGF
Sbjct: 440 KGEPGP-RGERGEAGIPGVPGAK----GEDGKDGSPG----EPGANGLPGAAGERGAPGF 490
Query: 125 SRALSPGPV-----PPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLR 168
P + P G R AP P A G G V GG +R
Sbjct: 491 RGPAGPNGIPGEKGPAGERGAPGPAGPR---GAAGEPGRDGVPGGPGMR 536
Score = 33.1 bits (74), Expect = 0.13
Identities = 47/170 (27%), Positives = 55/170 (32%), Gaps = 15/170 (8%)
Query: 4 RPTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAP 63
R P P P + G+ G G + R PS R + P G G AP
Sbjct: 536 RGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFP-----GPKGNDGAP 590
Query: 64 PRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPG 123
+ G G G + P + G GP GP G PGP G PG
Sbjct: 591 GKN----GERGGPGGPGPQGPPGKNGETGPQGPP-GPTGPGGDKGDTGPPGPQGLQGLPG 645
Query: 124 FSRALS----PG-PVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLR 168
PG P P G AP A A A G G + G LR
Sbjct: 646 TGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLR 695
Score = 33.1 bits (74), Expect = 0.13
Identities = 42/138 (30%), Positives = 47/138 (34%), Gaps = 30/138 (21%)
Query: 10 PTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVC 69
P AP APG G G + +S + GP G A G G PA R
Sbjct: 1040 PGAPGAPGHPGPPGPVG----------PAGKSGDRGESGPAGPA-GAPG--PAGSRGAPG 1086
Query: 70 AGSWQGHLGRAA-RVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRAL 128
+G G R H G PG P SPGPA GA G
Sbjct: 1087 PQGPRGDKGETGERGAAGIKGHRGFPGNPGAPG----------SPGPAGQQGAIG----- 1131
Query: 129 SPGPVPPGWRAAPRAGAP 146
SPGP P P +G P
Sbjct: 1132 SPGPAGPRGPVGP-SGPP 1148
Score = 32.3 bits (72), Expect = 0.22
Identities = 39/121 (32%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 48 GPCGAARGGTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQ--AGPACGFR 105
GP G +G TG P P+ QG G P + G PGP+ AG
Sbjct: 624 GP-GGDKGDTG--PPGPQGL------QGLPGTGG--PPGENGKPGEPGPKGDAGAPGAPG 672
Query: 106 ALGSAQSPG---PATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVG 162
G A +PG P AGAPG L G PPG A P A G+ G + +
Sbjct: 673 GKGDAGAPGERGPPGLAGAPG----LRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMP 728
Query: 163 G 163
G
Sbjct: 729 G 729
Score = 32.3 bits (72), Expect = 0.22
Identities = 45/159 (28%), Positives = 52/159 (32%), Gaps = 28/159 (17%)
Query: 3 PRPTPRQPTAPAAPGQRGRGGDISLT----------HRTVGALPSVARSWGDL-QWGPCG 51
P P + APG +G GD T HR P S G Q G G
Sbjct: 1072 PAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIG 1131
Query: 52 AARGGTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQ 111
+ R P P GH G +G PGP+ GS
Sbjct: 1132 SPGPAGPRGPVGPSGPPGKDGTSGHPGP-----------IGPPGPRGNRG----ERGSEG 1176
Query: 112 SPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRA 150
SPG G PG A PGP G AA AG ++A
Sbjct: 1177 SPGHPGQPGPPGPPGA--PGPCCGGVGAAAIAGIGGEKA 1213
Score = 29.6 bits (65), Expect = 1.4
Identities = 32/114 (28%), Positives = 38/114 (33%), Gaps = 12/114 (10%)
Query: 49 PCGAARGGTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALG 108
P G G P P A GH G V A + G AGPA G
Sbjct: 1028 PGGKGDRGENGSPGAPGA-------PGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAG 1080
Query: 109 SAQSPGPATAAGAPGFSRALSPGPVP-----PGWRAAPRAGAPHQRAAATGSGG 157
S +PGP G G + + PG AP + P + A GS G
Sbjct: 1081 SRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPG 1134
Score = 29.3 bits (64), Expect = 1.9
Identities = 51/192 (26%), Positives = 64/192 (33%), Gaps = 40/192 (20%)
Query: 3 PRPTPRQPTAPAAPGQRGRGGDISLTHRT-----VGALPSVARSWGDLQWGPCGAARGGT 57
P T P +P +PG +G G+ + GA+ + D + G G R G
Sbjct: 184 PPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPG--RPGE 241
Query: 58 GRVPAPPRACVCAG-----SWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRAL-GSAQ 111
+P PP AG +GH G R T G PG + G L G
Sbjct: 242 RGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGET--GAPGLK-----GENGLPGENG 294
Query: 112 SPGPATAAGAPG-FSRALSPG-------------------PVPPGWRAAPRAGAPHQRAA 151
+PGP GAPG R PG P PPG P +
Sbjct: 295 APGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVG 354
Query: 152 ATGSGGSRSVGG 163
GS GS G
Sbjct: 355 PAGSPGSNGAPG 366
Score = 28.9 bits (63), Expect = 2.4
Identities = 44/163 (26%), Positives = 57/163 (34%), Gaps = 36/163 (22%)
Query: 7 PRQPTAPAAP----GQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPA 62
P+ PTAP P G +G GD P + GD P + G+ P
Sbjct: 89 PQPPTAPTRPPNGQGPQGPKGD--------PGPPGIPGRNGD----PGIPGQPGSPGSPG 136
Query: 63 PPRACV-CAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGA 121
PP C C Q + + S VGG A PGPA G
Sbjct: 137 PPGICESCPTGPQNYSPQYDSYDVKSGVAVGG---------------LAGYPGPAGPPGP 181
Query: 122 PG-FSRALSPG-PVPPGWRAAPRAGAPHQRAAATGSGGSRSVG 162
PG + PG P PG++ P G P Q + G ++G
Sbjct: 182 PGPPGTSGHPGSPGSPGYQGPP--GEPGQAGPSGPPGPPGAIG 222
>gi|33188461 GATA binding protein 4 [Homo sapiens]
Length = 442
Score = 46.6 bits (109), Expect = 1e-05
Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 82 RVPCA----SHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSR------ALSPG 131
RVP + S+ GG G +G A G + G+A GP T G+PG+S+ A +P
Sbjct: 43 RVPSSVLGLSYLQGGGAGSASGGASGGSSGGAASGAGPGTQQGSPGWSQAGADGAAYTPP 102
Query: 132 PVPP--------GWRAAPRAGAPHQRAAATGSGGSRSVGG 163
PV P G AA A A + AAA SGG + G
Sbjct: 103 PVSPRFSFPGTTGSLAAAAAAAAAREAAAYSSGGGAAGAG 142
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 46.6 bits (109), Expect = 1e-05
Identities = 55/163 (33%), Positives = 65/163 (39%), Gaps = 40/163 (24%)
Query: 3 PRPTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPA 62
PRP P P+ PAAPG RG GA P RS LQ + G+
Sbjct: 106 PRPPPAAPSPPAAPGPRGG-----------GASPGARRS-DFLQ-------KTGSNSFTV 146
Query: 63 PPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPG---PATAA 119
PR H G AR+ H+ P P+AGPA R GS G P +
Sbjct: 147 HPRGL--------HRGAGARLLSNGHS---APEPRAGPA--NRLAGSPPGSGQWKPKVES 193
Query: 120 GAPGFSRALSPGPVPPGWRAAPRAGA-PHQR---AAATGSGGS 158
G P SPG P A+P A A P QR +AAT + S
Sbjct: 194 GDPSLHPPPSPG-TPSATPASPPASATPSQRQCVSAATSTNDS 235
Score = 27.7 bits (60), Expect = 5.4
Identities = 26/83 (31%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 80 AARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRA 139
AA++ A G P P R L P G+P RA P P PP
Sbjct: 54 AAQIRAAEVLVYGAP-----PGRVSRLLERFDPPAAPRRRGSP--ERARPPPPPPPPAPP 106
Query: 140 APRAGAPHQRAAATGSGGSRSVG 162
P AP AA GG S G
Sbjct: 107 RPPPAAPSPPAAPGPRGGGASPG 129
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 46.6 bits (109), Expect = 1e-05
Identities = 55/163 (33%), Positives = 65/163 (39%), Gaps = 40/163 (24%)
Query: 3 PRPTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPA 62
PRP P P+ PAAPG RG GA P RS LQ + G+
Sbjct: 106 PRPPPAAPSPPAAPGPRGG-----------GASPGARRS-DFLQ-------KTGSNSFTV 146
Query: 63 PPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPG---PATAA 119
PR H G AR+ H+ P P+AGPA R GS G P +
Sbjct: 147 HPRGL--------HRGAGARLLSNGHS---APEPRAGPA--NRLAGSPPGSGQWKPKVES 193
Query: 120 GAPGFSRALSPGPVPPGWRAAPRAGA-PHQR---AAATGSGGS 158
G P SPG P A+P A A P QR +AAT + S
Sbjct: 194 GDPSLHPPPSPG-TPSATPASPPASATPSQRQCVSAATSTNDS 235
Score = 27.7 bits (60), Expect = 5.4
Identities = 26/83 (31%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 80 AARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRA 139
AA++ A G P P R L P G+P RA P P PP
Sbjct: 54 AAQIRAAEVLVYGAP-----PGRVSRLLERFDPPAAPRRRGSP--ERARPPPPPPPPAPP 106
Query: 140 APRAGAPHQRAAATGSGGSRSVG 162
P AP AA GG S G
Sbjct: 107 RPPPAAPSPPAAPGPRGGGASPG 129
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 45.1 bits (105), Expect = 3e-05
Identities = 46/159 (28%), Positives = 60/159 (37%), Gaps = 12/159 (7%)
Query: 2 TPRPTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSV---ARSWGDLQWGPCGAARGGTG 58
+P P+QP + AAP +G+G GA P+ A Q GP A R +
Sbjct: 510 SPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSV 569
Query: 59 RVPAPPRACVCAGSWQGHLGRAARVPCAS----HTHVGGPGPQAGPACGFRALGSAQSPG 114
PAPP+A Q G + P + GP P+ GP + S PG
Sbjct: 570 SGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPS--GPG 627
Query: 115 PATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAAT 153
P AG P A P P A G PH + A+
Sbjct: 628 P---AGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLKAS 663
Score = 35.0 bits (79), Expect = 0.034
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 81 ARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRA- 139
A +P T + P P P G + G+ PG ATA + G + A SP PG
Sbjct: 15 ANLPNGYMTDLQRPQPPPPPP-GAHSPGATPGPGTATAERSSGVAPAASPAAPSPGSSGG 73
Query: 140 ----APRAGAPHQRAAATGSGGSRSVGGG 164
+ + A Q AA + S VGGG
Sbjct: 74 GGFFSSLSNAVKQTTAAAAATFSEQVGGG 102
Score = 33.1 bits (74), Expect = 0.13
Identities = 44/163 (26%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 7 PRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRA 66
PRQ A+PG+ G S GALP + R GP R P P
Sbjct: 419 PRQRQRDASPGRGSHGQTPS-----PGALP-LGRQTSQQPAGPPAQQRPPPQGGPPQPGP 472
Query: 67 CVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSP-GPATAAGAP--- 122
G + R P H+ G GP AG R +P PA+ A P
Sbjct: 473 ----GPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQG 528
Query: 123 --GFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGG 163
SR ++ GP P P + +P ++A + SV G
Sbjct: 529 QGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSG 571
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 44.3 bits (103), Expect = 6e-05
Identities = 50/155 (32%), Positives = 55/155 (35%), Gaps = 26/155 (16%)
Query: 2 TPRPTPRQPTAPAAPGQR-----------GRGGDISLTHRTVGALPSVARSWGDLQWGPC 50
TP P P P PA P Q+ G G ALP A G GP
Sbjct: 17 TPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPPRAEALPPEAADEG----GPR 72
Query: 51 GAAR---GGTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGP--GPQAGPACGFR 105
G R GR P A GS G GR P S GP GP+ +C
Sbjct: 73 GRLRSRDSSCGRPGTPGAASTAKGSPNGECGRGE--PQCSPAGPEGPARGPKVSFSCRGA 130
Query: 106 ALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAA 140
A G A PGPA AG S P P G +A+
Sbjct: 131 ASGPAPGPGPAEEAG----SEEAGPAGEPRGSQAS 161
Score = 32.3 bits (72), Expect = 0.22
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 98 AGPACGFRALGSAQ-----SPGPATAAGAPGFSRALSPGPVPPGWRAAPRA 143
A P G ALGS + PGPA AA +PG P PPG A+PRA
Sbjct: 743 ARPLVGPLALGSPRLVRRPPPGPAPAAASPG----PPPPASPPGAPASPRA 789
Score = 27.3 bits (59), Expect = 7.1
Identities = 21/49 (42%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 96 PQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAG 144
P GPA A S P PA+ GAP RA P G AAP AG
Sbjct: 761 PPPGPA---PAAASPGPPPPASPPGAPASPRAPRTSPY-GGLPAAPLAG 805
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 44.3 bits (103), Expect = 6e-05
Identities = 48/180 (26%), Positives = 63/180 (35%), Gaps = 23/180 (12%)
Query: 2 TPRPTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSV---ARSWGDLQWGPCGAARGGTG 58
+P P+QP + AAP +G+G GA P+ A Q GP A R +
Sbjct: 510 SPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSV 569
Query: 59 RVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATA 118
PAPP +A+ P G P GPA R A GP
Sbjct: 570 SGPAPP--------------KASGAPPGGQQRQGPPQKPPGPAGPTR---QASQAGPVPR 612
Query: 119 AGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEEA 178
G P + GP P G A P Q + + GG H ++ +S L A
Sbjct: 613 TGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATA---AAGGPPHPQLNKSQSLTNA 669
Score = 35.0 bits (79), Expect = 0.034
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 81 ARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRA- 139
A +P T + P P P G + G+ PG ATA + G + A SP PG
Sbjct: 15 ANLPNGYMTDLQRPQPPPPPP-GAHSPGATPGPGTATAERSSGVAPAASPAAPSPGSSGG 73
Query: 140 ----APRAGAPHQRAAATGSGGSRSVGGG 164
+ + A Q AA + S VGGG
Sbjct: 74 GGFFSSLSNAVKQTTAAAAATFSEQVGGG 102
Score = 33.1 bits (74), Expect = 0.13
Identities = 44/163 (26%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 7 PRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRA 66
PRQ A+PG+ G S GALP + R GP R P P
Sbjct: 419 PRQRQRDASPGRGSHGQTPS-----PGALP-LGRQTSQQPAGPPAQQRPPPQGGPPQPGP 472
Query: 67 CVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSP-GPATAAGAP--- 122
G + R P H+ G GP AG R +P PA+ A P
Sbjct: 473 ----GPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQG 528
Query: 123 --GFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGG 163
SR ++ GP P P + +P ++A + SV G
Sbjct: 529 QGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSG 571
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 43.9 bits (102), Expect = 7e-05
Identities = 47/153 (30%), Positives = 53/153 (34%), Gaps = 28/153 (18%)
Query: 7 PRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRA 66
P P P PG+ GR G S LP V G + G GR P R
Sbjct: 908 PGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRT 967
Query: 67 CVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSR 126
+G LG A G PG + GS +PGPA A G G +
Sbjct: 968 -----GQKGSLGEA-----------GAPGHK----------GSKGAPGPAGARGESGLAG 1001
Query: 127 ALSPG--PVPPGWRAAPRAGAPHQRAAATGSGG 157
A P P PPG P G P GSGG
Sbjct: 1002 APGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGG 1034
Score = 34.7 bits (78), Expect = 0.044
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 92 GGPGPQAGPACGFRA-LGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRA 150
G PGPQ P G+ G PGP PG R P PPG P G P
Sbjct: 1380 GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPP--GPPGTMG 1437
Query: 151 AATG 154
A++G
Sbjct: 1438 ASSG 1441
Score = 34.3 bits (77), Expect = 0.058
Identities = 55/192 (28%), Positives = 65/192 (33%), Gaps = 42/192 (21%)
Query: 6 TPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARG--GTGRVPAP 63
TP + P PG+ G+ GD + P GD + P RG G P P
Sbjct: 815 TPGRDGEPGDPGEDGKPGDTG--PQGFPGTPGDVGPKGD-KGDPGVGERGPPGPQGPPGP 871
Query: 64 PRACV---------CAGSWQGHLGRAARVPCASHTHVGGPGPQAGPAC----GFRALGSA 110
P GS G A R P G PGP P G + S+
Sbjct: 872 PGPSFRHDKLTFIDMEGSGFGGDLEALRGP---RGFPGPPGPPGVPGLPGEPGRFGVNSS 928
Query: 111 QSPGPATAAGAPGFSRALSPG-------PVPPGWRAAP----------RAGAPHQRAA-- 151
PGPA G PG R PG P PPG P AGAP + +
Sbjct: 929 DVPGPAGLPGVPG--REGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG 986
Query: 152 ATGSGGSRSVGG 163
A G G+R G
Sbjct: 987 APGPAGARGESG 998
Score = 32.7 bits (73), Expect = 0.17
Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 48 GPCGAARGGTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRAL 107
G G + G P PP V G + + P G PGP AGP +
Sbjct: 1108 GKDGVGQPGLPGPPGPPGPVVYVSEQDGSV-LSVPGPEGRPGFAGFPGP-AGPKGNLGSK 1165
Query: 108 GSAQSPGPATAAGAPGFSRALSPGPVPPGWRAA 140
G SPGP G PG + G + P + A
Sbjct: 1166 GERGSPGPKGEKGEPGSIFSPDGGALGPAQKGA 1198
Score = 30.8 bits (68), Expect = 0.64
Identities = 48/162 (29%), Positives = 57/162 (35%), Gaps = 37/162 (22%)
Query: 13 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 72
P PG G G + G++ SV GP G R G P P AG
Sbjct: 1115 PGLPGPPGPPGPVVYVSEQDGSVLSVP--------GPEG--RPGFAGFPGP------AGP 1158
Query: 73 WQGHLGRAARVPCASHTHVGGPGPQAG---PACGFRALGSAQSPGPATAAGAPGFSRALS 129
+G+LG S G PGP+ P F G A P A G PGF
Sbjct: 1159 -KGNLG--------SKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRG--P 1207
Query: 130 PGPV-PPGWRA----APRAGAPHQRA--AATGSGGSRSVGGG 164
PGP PG++ R G P G G S+G G
Sbjct: 1208 PGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFG 1249
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 43.9 bits (102), Expect = 7e-05
Identities = 47/153 (30%), Positives = 53/153 (34%), Gaps = 28/153 (18%)
Query: 7 PRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRA 66
P P P PG+ GR G S LP V G + G GR P R
Sbjct: 493 PGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRT 552
Query: 67 CVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSR 126
+G LG A G PG + GS +PGPA A G G +
Sbjct: 553 -----GQKGSLGEA-----------GAPGHK----------GSKGAPGPAGARGESGLAG 586
Query: 127 ALSPG--PVPPGWRAAPRAGAPHQRAAATGSGG 157
A P P PPG P G P GSGG
Sbjct: 587 APGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGG 619
Score = 34.7 bits (78), Expect = 0.044
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 92 GGPGPQAGPACGFRA-LGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRA 150
G PGPQ P G+ G PGP PG R P PPG P G P
Sbjct: 965 GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPP--GPPGTMG 1022
Query: 151 AATG 154
A++G
Sbjct: 1023 ASSG 1026
Score = 34.3 bits (77), Expect = 0.058
Identities = 55/192 (28%), Positives = 65/192 (33%), Gaps = 42/192 (21%)
Query: 6 TPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARG--GTGRVPAP 63
TP + P PG+ G+ GD + P GD + P RG G P P
Sbjct: 400 TPGRDGEPGDPGEDGKPGDTG--PQGFPGTPGDVGPKGD-KGDPGVGERGPPGPQGPPGP 456
Query: 64 PRACV---------CAGSWQGHLGRAARVPCASHTHVGGPGPQAGPAC----GFRALGSA 110
P GS G A R P G PGP P G + S+
Sbjct: 457 PGPSFRHDKLTFIDMEGSGFGGDLEALRGP---RGFPGPPGPPGVPGLPGEPGRFGVNSS 513
Query: 111 QSPGPATAAGAPGFSRALSPG-------PVPPGWRAAP----------RAGAPHQRAA-- 151
PGPA G PG R PG P PPG P AGAP + +
Sbjct: 514 DVPGPAGLPGVPG--REGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG 571
Query: 152 ATGSGGSRSVGG 163
A G G+R G
Sbjct: 572 APGPAGARGESG 583
Score = 32.7 bits (73), Expect = 0.17
Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 48 GPCGAARGGTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRAL 107
G G + G P PP V G + + P G PGP AGP +
Sbjct: 693 GKDGVGQPGLPGPPGPPGPVVYVSEQDGSV-LSVPGPEGRPGFAGFPGP-AGPKGNLGSK 750
Query: 108 GSAQSPGPATAAGAPGFSRALSPGPVPPGWRAA 140
G SPGP G PG + G + P + A
Sbjct: 751 GERGSPGPKGEKGEPGSIFSPDGGALGPAQKGA 783
Score = 30.8 bits (68), Expect = 0.64
Identities = 48/162 (29%), Positives = 57/162 (35%), Gaps = 37/162 (22%)
Query: 13 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 72
P PG G G + G++ SV GP G R G P P AG
Sbjct: 700 PGLPGPPGPPGPVVYVSEQDGSVLSVP--------GPEG--RPGFAGFPGP------AGP 743
Query: 73 WQGHLGRAARVPCASHTHVGGPGPQAG---PACGFRALGSAQSPGPATAAGAPGFSRALS 129
+G+LG S G PGP+ P F G A P A G PGF
Sbjct: 744 -KGNLG--------SKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRG--P 792
Query: 130 PGPV-PPGWRA----APRAGAPHQRA--AATGSGGSRSVGGG 164
PGP PG++ R G P G G S+G G
Sbjct: 793 PGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFG 834
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 43.9 bits (102), Expect = 7e-05
Identities = 47/153 (30%), Positives = 53/153 (34%), Gaps = 28/153 (18%)
Query: 7 PRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRA 66
P P P PG+ GR G S LP V G + G GR P R
Sbjct: 673 PGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRT 732
Query: 67 CVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSR 126
+G LG A G PG + GS +PGPA A G G +
Sbjct: 733 -----GQKGSLGEA-----------GAPGHK----------GSKGAPGPAGARGESGLAG 766
Query: 127 ALSPG--PVPPGWRAAPRAGAPHQRAAATGSGG 157
A P P PPG P G P GSGG
Sbjct: 767 APGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGG 799
Score = 34.7 bits (78), Expect = 0.044
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 92 GGPGPQAGPACGFRA-LGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRA 150
G PGPQ P G+ G PGP PG R P PPG P G P
Sbjct: 1145 GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPP--GPPGTMG 1202
Query: 151 AATG 154
A++G
Sbjct: 1203 ASSG 1206
Score = 34.3 bits (77), Expect = 0.058
Identities = 55/192 (28%), Positives = 65/192 (33%), Gaps = 42/192 (21%)
Query: 6 TPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARG--GTGRVPAP 63
TP + P PG+ G+ GD + P GD + P RG G P P
Sbjct: 580 TPGRDGEPGDPGEDGKPGDTG--PQGFPGTPGDVGPKGD-KGDPGVGERGPPGPQGPPGP 636
Query: 64 PRACV---------CAGSWQGHLGRAARVPCASHTHVGGPGPQAGPAC----GFRALGSA 110
P GS G A R P G PGP P G + S+
Sbjct: 637 PGPSFRHDKLTFIDMEGSGFGGDLEALRGP---RGFPGPPGPPGVPGLPGEPGRFGVNSS 693
Query: 111 QSPGPATAAGAPGFSRALSPG-------PVPPGWRAAP----------RAGAPHQRAA-- 151
PGPA G PG R PG P PPG P AGAP + +
Sbjct: 694 DVPGPAGLPGVPG--REGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG 751
Query: 152 ATGSGGSRSVGG 163
A G G+R G
Sbjct: 752 APGPAGARGESG 763
Score = 32.7 bits (73), Expect = 0.17
Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 48 GPCGAARGGTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRAL 107
G G + G P PP V G + + P G PGP AGP +
Sbjct: 873 GKDGVGQPGLPGPPGPPGPVVYVSEQDGSV-LSVPGPEGRPGFAGFPGP-AGPKGNLGSK 930
Query: 108 GSAQSPGPATAAGAPGFSRALSPGPVPPGWRAA 140
G SPGP G PG + G + P + A
Sbjct: 931 GERGSPGPKGEKGEPGSIFSPDGGALGPAQKGA 963
Score = 30.8 bits (68), Expect = 0.64
Identities = 48/162 (29%), Positives = 57/162 (35%), Gaps = 37/162 (22%)
Query: 13 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 72
P PG G G + G++ SV GP G R G P P AG
Sbjct: 880 PGLPGPPGPPGPVVYVSEQDGSVLSVP--------GPEG--RPGFAGFPGP------AGP 923
Query: 73 WQGHLGRAARVPCASHTHVGGPGPQAG---PACGFRALGSAQSPGPATAAGAPGFSRALS 129
+G+LG S G PGP+ P F G A P A G PGF
Sbjct: 924 -KGNLG--------SKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRG--P 972
Query: 130 PGPV-PPGWRA----APRAGAPHQRA--AATGSGGSRSVGGG 164
PGP PG++ R G P G G S+G G
Sbjct: 973 PGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFG 1014
>gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 43.5 bits (101), Expect = 1e-04
Identities = 51/156 (32%), Positives = 63/156 (40%), Gaps = 14/156 (8%)
Query: 13 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 72
P G+ RG S T R+ + A W L GP G G VP P A V A
Sbjct: 309 PRLCGKSPRG---SQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAVSASR 365
Query: 73 WQGHLGRAARVPCASHTHVGGPGPQAGPACGFRA-LGSAQSPG-PATAAGAPGFSRALSP 130
W G G +P S G P P+C RA LG+A++PG G G RA
Sbjct: 366 WGG--GGPQPLPQVSKEGSGLARPD--PSCCVRAGLGAAKTPGAQGERLGPRGTRRARGL 421
Query: 131 GPVPPGWR----AAPRAGAPHQRAAATGSGGSRSVG 162
P G + AAP P Q G+G + S+G
Sbjct: 422 QLRPVGGQSRREAAPACSGP-QPCRPHGTGAASSLG 456
>gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 43.5 bits (101), Expect = 1e-04
Identities = 51/156 (32%), Positives = 63/156 (40%), Gaps = 14/156 (8%)
Query: 13 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 72
P G+ RG S T R+ + A W L GP G G VP P A V A
Sbjct: 309 PRLCGKSPRG---SQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAVSASR 365
Query: 73 WQGHLGRAARVPCASHTHVGGPGPQAGPACGFRA-LGSAQSPG-PATAAGAPGFSRALSP 130
W G G +P S G P P+C RA LG+A++PG G G RA
Sbjct: 366 WGG--GGPQPLPQVSKEGSGLARPD--PSCCVRAGLGAAKTPGAQGERLGPRGTRRARGL 421
Query: 131 GPVPPGWR----AAPRAGAPHQRAAATGSGGSRSVG 162
P G + AAP P Q G+G + S+G
Sbjct: 422 QLRPVGGQSRREAAPACSGP-QPCRPHGTGAASSLG 456
>gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo
sapiens]
Length = 461
Score = 43.5 bits (101), Expect = 1e-04
Identities = 51/156 (32%), Positives = 63/156 (40%), Gaps = 14/156 (8%)
Query: 13 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 72
P G+ RG S T R+ + A W L GP G G VP P A V A
Sbjct: 309 PRLCGKSPRG---SQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAVSASR 365
Query: 73 WQGHLGRAARVPCASHTHVGGPGPQAGPACGFRA-LGSAQSPG-PATAAGAPGFSRALSP 130
W G G +P S G P P+C RA LG+A++PG G G RA
Sbjct: 366 WGG--GGPQPLPQVSKEGSGLARPD--PSCCVRAGLGAAKTPGAQGERLGPRGTRRARGL 421
Query: 131 GPVPPGWR----AAPRAGAPHQRAAATGSGGSRSVG 162
P G + AAP P Q G+G + S+G
Sbjct: 422 QLRPVGGQSRREAAPACSGP-QPCRPHGTGAASSLG 456
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 42.7 bits (99), Expect = 2e-04
Identities = 50/171 (29%), Positives = 64/171 (37%), Gaps = 27/171 (15%)
Query: 3 PRPTPRQPTAPAAPGQRGRGGDISL---THRTVGALPSVARSWGDLQWGPCGAARGGTGR 59
PR P + AP PG G+ G++ LP G GP G + G
Sbjct: 169 PRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPS--GPPGVGKRGENG 226
Query: 60 VPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAA 119
VP P G + G +G +G PGPQ P G R PG A A
Sbjct: 227 VPGQPGIKGDRG-FPGEMG-----------PIGPPGPQGPP--GERGPEGIGKPGAAGAP 272
Query: 120 GAPGF--SRAL--SPG----PVPPGWRAAPRAGAPHQRAAATGSGGSRSVG 162
G PG ++ L +PG P PPG+ G +R A GG + G
Sbjct: 273 GQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKG 323
Score = 34.3 bits (77), Expect = 0.058
Identities = 47/160 (29%), Positives = 56/160 (35%), Gaps = 18/160 (11%)
Query: 13 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 72
P APG G G + L R L GP G +P P G+
Sbjct: 284 PGAPGIAGPPGPPGFGKPGLPGLKG-ERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGN 342
Query: 73 W--QGHLGRAARVPCASHTHVGGPGPQ-----AGPACGFRALGSAQSPGPATAAGAPGFS 125
QG G +P SH G PGP+ AGPA A G SPG G PG
Sbjct: 343 MGPQGPKG----IP-GSH---GLPGPKGETGPAGPAGYPGAKGERGSPGSDGKPGYPGKP 394
Query: 126 RALSP--GPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGG 163
P P PG + P G P G G++ + G
Sbjct: 395 GLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPG 434
Score = 28.1 bits (61), Expect = 4.1
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 91 VGGPGPQAGPA--CGFRAL-GSAQSPGPATAAGAPGFSRALSPGPVP--PGWRAAPRAGA 145
VGGP GP G + + G GP A G PG + P +P PG + P +
Sbjct: 414 VGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPG 473
Query: 146 PHQRAAATGSG 156
P A G
Sbjct: 474 PPGPAGIATKG 484
>gi|239756849 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 42.0 bits (97), Expect = 3e-04
Identities = 47/161 (29%), Positives = 62/161 (38%), Gaps = 28/161 (17%)
Query: 16 PGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGSW-- 73
PG RG+ V A P ++ +WG C + VP +CAG+W
Sbjct: 40 PGLRGK----------VSAGPQLS-AWGRELCEWCSPSPSSASYVPED----LCAGAWGA 84
Query: 74 -----QGHLGRAARVPCASHTHVGGPG---PQAGPAC--GFRALGSAQSPGPATAAGAPG 123
H G+ R P A G G P A P RA G S AA AP
Sbjct: 85 GGGDKHSHFGKQER-PHAREKGGRGWGWSTPTANPRLCREARACGGPGSRARTPAAPAPL 143
Query: 124 FSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGG 164
+S + P+PPG P+ G P +A +G+ VG G
Sbjct: 144 WSLPMPTSPLPPGVGGQPQLGKPTVDSAWSGTWQEAGVGEG 184
>gi|239751345 PREDICTED: hypothetical protein XP_002347810 [Homo
sapiens]
Length = 329
Score = 42.0 bits (97), Expect = 3e-04
Identities = 47/161 (29%), Positives = 62/161 (38%), Gaps = 28/161 (17%)
Query: 16 PGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGSW-- 73
PG RG+ V A P ++ +WG C + VP +CAG+W
Sbjct: 40 PGLRGK----------VSAGPQLS-AWGRELCEWCSPSPSSASYVPED----LCAGAWGA 84
Query: 74 -----QGHLGRAARVPCASHTHVGGPG---PQAGPAC--GFRALGSAQSPGPATAAGAPG 123
H G+ R P A G G P A P RA G S AA AP
Sbjct: 85 GGGDKHSHFGKQER-PHAREKGGRGWGWSTPTANPRLCREARACGGPGSRARTPAAPAPL 143
Query: 124 FSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGG 164
+S + P+PPG P+ G P +A +G+ VG G
Sbjct: 144 WSLPMPTSPLPPGVGGQPQLGKPTVDSAWSGTWQEAGVGEG 184
>gi|239745844 PREDICTED: hypothetical protein XP_002343563 [Homo
sapiens]
Length = 329
Score = 42.0 bits (97), Expect = 3e-04
Identities = 47/161 (29%), Positives = 62/161 (38%), Gaps = 28/161 (17%)
Query: 16 PGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGSW-- 73
PG RG+ V A P ++ +WG C + VP +CAG+W
Sbjct: 40 PGLRGK----------VSAGPQLS-AWGRELCEWCSPSPSSASYVPED----LCAGAWGA 84
Query: 74 -----QGHLGRAARVPCASHTHVGGPG---PQAGPAC--GFRALGSAQSPGPATAAGAPG 123
H G+ R P A G G P A P RA G S AA AP
Sbjct: 85 GGGDKHSHFGKQER-PHAREKGGRGWGWSTPTANPRLCREARACGGPGSRARTPAAPAPL 143
Query: 124 FSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGG 164
+S + P+PPG P+ G P +A +G+ VG G
Sbjct: 144 WSLPMPTSPLPPGVGGQPQLGKPTVDSAWSGTWQEAGVGEG 184
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 41.2 bits (95), Expect = 5e-04
Identities = 53/190 (27%), Positives = 66/190 (34%), Gaps = 48/190 (25%)
Query: 6 TPRQPTAPAAPG-QRGRGGDISLTH-----RTVGALPSVARSWGDLQWGPCGAARGGTGR 59
T R P A PG Q+GRG H + V A P R G G +
Sbjct: 169 TARGPNTSATPGPQKGRGSAERTNHIPKDKQRVAAPPPPERPRVPFCRGSSGLS------ 222
Query: 60 VPAPPRACVCAGSWQGHLGRAARVP---------------CA-SHTH----------VGG 93
VP PP AG + R +P CA S +H +
Sbjct: 223 VPTPPEH---AGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSSSHSAPLPFFWSPLRN 279
Query: 94 PGPQAGPACGFRALGSAQSP----GPATAAGAPGFS---RALSPGPVPPGWRAAPRAGAP 146
P P+ PACG LG P G +++ G G R L P P W AA GAP
Sbjct: 280 PSPRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKHRTLPAPPAPTAWPAAGAPGAP 339
Query: 147 HQRAAATGSG 156
+ + G G
Sbjct: 340 NPAESRRGPG 349
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 41.2 bits (95), Expect = 5e-04
Identities = 53/190 (27%), Positives = 66/190 (34%), Gaps = 48/190 (25%)
Query: 6 TPRQPTAPAAPG-QRGRGGDISLTH-----RTVGALPSVARSWGDLQWGPCGAARGGTGR 59
T R P A PG Q+GRG H + V A P R G G +
Sbjct: 169 TARGPNTSATPGPQKGRGSAERTNHIPKDKQRVAAPPPPERPRVPFCRGSSGLS------ 222
Query: 60 VPAPPRACVCAGSWQGHLGRAARVP---------------CA-SHTH----------VGG 93
VP PP AG + R +P CA S +H +
Sbjct: 223 VPTPPEH---AGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSSSHSAPLPFFWSPLRN 279
Query: 94 PGPQAGPACGFRALGSAQSP----GPATAAGAPGFS---RALSPGPVPPGWRAAPRAGAP 146
P P+ PACG LG P G +++ G G R L P P W AA GAP
Sbjct: 280 PSPRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKHRTLPAPPAPTAWPAAGAPGAP 339
Query: 147 HQRAAATGSG 156
+ + G G
Sbjct: 340 NPAESRRGPG 349
>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 41.2 bits (95), Expect = 5e-04
Identities = 53/190 (27%), Positives = 66/190 (34%), Gaps = 48/190 (25%)
Query: 6 TPRQPTAPAAPG-QRGRGGDISLTH-----RTVGALPSVARSWGDLQWGPCGAARGGTGR 59
T R P A PG Q+GRG H + V A P R G G +
Sbjct: 169 TARGPNTSATPGPQKGRGSAERTNHIPKDKQRVAAPPPPERPRVPFCRGSSGLS------ 222
Query: 60 VPAPPRACVCAGSWQGHLGRAARVP---------------CA-SHTH----------VGG 93
VP PP AG + R +P CA S +H +
Sbjct: 223 VPTPPEH---AGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSSSHSAPLPFFWSPLRN 279
Query: 94 PGPQAGPACGFRALGSAQSP----GPATAAGAPGFS---RALSPGPVPPGWRAAPRAGAP 146
P P+ PACG LG P G +++ G G R L P P W AA GAP
Sbjct: 280 PSPRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKHRTLPAPPAPTAWPAAGAPGAP 339
Query: 147 HQRAAATGSG 156
+ + G G
Sbjct: 340 NPAESRRGPG 349
>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
Length = 411
Score = 41.2 bits (95), Expect = 5e-04
Identities = 46/155 (29%), Positives = 62/155 (40%), Gaps = 32/155 (20%)
Query: 4 RPTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGP-CGAARG------- 55
R P P A A+ QRG G + T+ S+ ++WG GP C A +G
Sbjct: 42 RAAPLVPAASASAPQRGPSGILPAAEPTI---CSLHQAWG----GPGCRAQKGIPAALSP 94
Query: 56 GTGRVPAPPRACV-----CAGSWQGHLGRAARVPCASHTHVGG--------PGPQAGPAC 102
G G +PAP GS G + A++P + G PGP GP
Sbjct: 95 GPGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIP 154
Query: 103 GFRALGSAQSPGPAT---AAGAPGFSRALSPGPVP 134
G G A PGP + + PG +PGP+P
Sbjct: 155 G-PISGPAPIPGPISGPFSGPNPGPIPGPNPGPIP 188
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 40.8 bits (94), Expect = 6e-04
Identities = 48/161 (29%), Positives = 56/161 (34%), Gaps = 41/161 (25%)
Query: 15 APGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGSWQ 74
AP + G H +GAL + Q P GG G P +
Sbjct: 130 APPKMGEPAGGRYEHPGLGALGT--------QQPPVAVPGGGGGPAAVP--------EFN 173
Query: 75 GHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPG-------PATAAGAPGFSRA 127
+ G AA GGPG +AGP F G QSPG A AAGAPG
Sbjct: 174 NYYGSAAPAS-------GGPGGRAGPC--FDQHGGQQSPGMGMMHSASAAAAGAPG---- 220
Query: 128 LSPGPVPPGWRAAPRAGAPH----QRAAATGSGGSRSVGGG 164
S P+ P + H R A G GG GGG
Sbjct: 221 -SMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGG 260
Score = 28.9 bits (63), Expect = 2.4
Identities = 40/175 (22%), Positives = 50/175 (28%), Gaps = 28/175 (16%)
Query: 12 APAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAG 71
A AA G GG + G L S + G + GP G + A AG
Sbjct: 287 AAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGS----AAG 342
Query: 72 SWQGHLGRAARVPCASHT-------------HVGG-----------PGPQAGPACGFRAL 107
+Q G+ A+ T GG P P + P A
Sbjct: 343 GFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAA 402
Query: 108 GSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVG 162
G+A A A G P W AA + P G RS G
Sbjct: 403 GAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQG 457
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 40.8 bits (94), Expect = 6e-04
Identities = 48/161 (29%), Positives = 56/161 (34%), Gaps = 41/161 (25%)
Query: 15 APGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGSWQ 74
AP + G H +GAL + Q P GG G P +
Sbjct: 130 APPKMGEPAGGRYEHPGLGALGT--------QQPPVAVPGGGGGPAAVP--------EFN 173
Query: 75 GHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPG-------PATAAGAPGFSRA 127
+ G AA GGPG +AGP F G QSPG A AAGAPG
Sbjct: 174 NYYGSAAPAS-------GGPGGRAGPC--FDQHGGQQSPGMGMMHSASAAAAGAPG---- 220
Query: 128 LSPGPVPPGWRAAPRAGAPH----QRAAATGSGGSRSVGGG 164
S P+ P + H R A G GG GGG
Sbjct: 221 -SMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGG 260
Score = 28.9 bits (63), Expect = 2.4
Identities = 40/175 (22%), Positives = 50/175 (28%), Gaps = 28/175 (16%)
Query: 12 APAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAG 71
A AA G GG + G L S + G + GP G + A AG
Sbjct: 287 AAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGS----AAG 342
Query: 72 SWQGHLGRAARVPCASHT-------------HVGG-----------PGPQAGPACGFRAL 107
+Q G+ A+ T GG P P + P A
Sbjct: 343 GFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAA 402
Query: 108 GSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVG 162
G+A A A G P W AA + P G RS G
Sbjct: 403 GAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQG 457
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 40.8 bits (94), Expect = 6e-04
Identities = 48/161 (29%), Positives = 56/161 (34%), Gaps = 41/161 (25%)
Query: 15 APGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGSWQ 74
AP + G H +GAL + Q P GG G P +
Sbjct: 130 APPKMGEPAGGRYEHPGLGALGT--------QQPPVAVPGGGGGPAAVP--------EFN 173
Query: 75 GHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPG-------PATAAGAPGFSRA 127
+ G AA GGPG +AGP F G QSPG A AAGAPG
Sbjct: 174 NYYGSAAPAS-------GGPGGRAGPC--FDQHGGQQSPGMGMMHSASAAAAGAPG---- 220
Query: 128 LSPGPVPPGWRAAPRAGAPH----QRAAATGSGGSRSVGGG 164
S P+ P + H R A G GG GGG
Sbjct: 221 -SMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGG 260
Score = 28.9 bits (63), Expect = 2.4
Identities = 40/175 (22%), Positives = 50/175 (28%), Gaps = 28/175 (16%)
Query: 12 APAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAG 71
A AA G GG + G L S + G + GP G + A AG
Sbjct: 287 AAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGS----AAG 342
Query: 72 SWQGHLGRAARVPCASHT-------------HVGG-----------PGPQAGPACGFRAL 107
+Q G+ A+ T GG P P + P A
Sbjct: 343 GFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAA 402
Query: 108 GSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVG 162
G+A A A G P W AA + P G RS G
Sbjct: 403 GAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQG 457
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 40.4 bits (93), Expect = 8e-04
Identities = 51/162 (31%), Positives = 61/162 (37%), Gaps = 34/162 (20%)
Query: 9 QPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGA-----ARGGTGRVPAP 63
QP A G+ G+ GD GA S GP G ARG G P
Sbjct: 844 QPGAKGEQGEAGQKGD-------AGAPGPQGPSGAPGPQGPTGVTGPKGARGAQG----P 892
Query: 64 PRACVCAGSWQGHLGRAARV-PCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAP 122
P A G G A RV P S+ + G PGP GP+ G+ GP AG P
Sbjct: 893 PGAT-------GFPGAAGRVGPPGSNGNPGPPGPP-GPSGKDGPKGARGDSGPPGRAGEP 944
Query: 123 GFSRALSPGPV-PPGWRAAPRAGAPHQRAAATGSGGSRSVGG 163
G GP PPG + P P + A G G + + G
Sbjct: 945 GLQ-----GPAGPPGEKGEPGDDGP---SGAEGPPGPQGLAG 978
Score = 37.0 bits (84), Expect = 0.009
Identities = 48/159 (30%), Positives = 57/159 (35%), Gaps = 19/159 (11%)
Query: 9 QPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACV 68
+P P +PG G G+ +P S G G GA R P P+
Sbjct: 394 EPGTPGSPGPAGASGNPG-----TDGIPGAKGSAGAP--GIAGAPGFPGPRGPPGPQG-- 444
Query: 69 CAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRAL 128
A G G+ A GP + GPA A G A G A G PG
Sbjct: 445 -ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPG----- 498
Query: 129 SPGPV-PPGWRAAP-RAGAPHQ--RAAATGSGGSRSVGG 163
GP+ PPG R AP G P Q A G+ G R G
Sbjct: 499 GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG 537
Score = 36.6 bits (83), Expect = 0.012
Identities = 45/138 (32%), Positives = 51/138 (36%), Gaps = 23/138 (16%)
Query: 48 GPCGAA--RGGTGRV-PAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGF 104
GP GAA RG G+ PA P V G G A T GP GP
Sbjct: 336 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR--- 392
Query: 105 RALGSAQSPGPATA---------------AGAPGFSRALS-PGP-VPPGWRAAPRAGAPH 147
G+ SPGPA A AGAPG + A PGP PPG + A P
Sbjct: 393 GEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK 452
Query: 148 QRAAATGSGGSRSVGGGK 165
+ G G + G K
Sbjct: 453 GQTGEPGIAGFKGEQGPK 470
Score = 35.8 bits (81), Expect = 0.020
Identities = 63/189 (33%), Positives = 74/189 (39%), Gaps = 44/189 (23%)
Query: 7 PRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG--AARGGTGRV--PA 62
P +P P A G GR GD + VG PS A D + GP G ARG G + P
Sbjct: 551 PGEPGLPGARGLTGRPGDAGPQGK-VG--PSGAPG-EDGRPGPPGPQGARGQPGVMGFPG 606
Query: 63 PPRACVCAGSWQGHLGRAAR--VPCA----------SHTHVGGPGPQAGPACGFRALGSA 110
P A G G+A +P A T GP AGPA G R G
Sbjct: 607 PKGA-------NGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPA-GER--GEQ 656
Query: 111 QSPGPATAAGAPGFSRALSPGPV----PPGWRAAP-RAGAPHQRAAATGSGGSRSVGGGK 165
+PGP+ G PG PGP PG + P AGAP G G R G +
Sbjct: 657 GAPGPSGFQGLPG-----PPGPPGEGGKPGDQGVPGEAGAP----GLVGPRGERGFPGER 707
Query: 166 HLRIAQSLR 174
AQ L+
Sbjct: 708 GSPGAQGLQ 716
Score = 34.3 bits (77), Expect = 0.058
Identities = 48/171 (28%), Positives = 58/171 (33%), Gaps = 25/171 (14%)
Query: 7 PRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTG-RVPAPPR 65
P P P PG G GG+ + + G A G Q G G G R P P
Sbjct: 161 PGPPGPPGPPGPPGLGGNFAA--QMAGGFDEKA---GGAQLGVMQGPMGPMGPRGPPGPA 215
Query: 66 ACVCAGSWQGHLGRAARVPCASHTHV-GGPGPQAGPACGFRA-----LGSAQSPGPATAA 119
+QG+ G + G PGP P A G PGP A
Sbjct: 216 GAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGAR 275
Query: 120 GAPGFSRALSPG-PVPPGWRAAP-------RAGAPHQRAAATGSGGSRSVG 162
G PG +PG P G R P AGAP + + G + S G
Sbjct: 276 GFPG-----TPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPG 321
Score = 33.5 bits (75), Expect = 0.099
Identities = 29/86 (33%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 92 GGPGPQA-----GPACGFRALGSAQSPGPATAAGAPGFSRALSPG-PVPPGWRAAPRAGA 145
G PGPQ GP G +PGP G PG +PG P PPG P
Sbjct: 120 GPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPG-----TPGNPGPPGPPGPPGPPG 174
Query: 146 PHQRAAATGSGGSRSVGGGKHLRIAQ 171
AA +GG GG L + Q
Sbjct: 175 LGGNFAAQMAGGFDEKAGGAQLGVMQ 200
Score = 33.5 bits (75), Expect = 0.099
Identities = 52/171 (30%), Positives = 58/171 (33%), Gaps = 19/171 (11%)
Query: 3 PRPTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG--------AAR 54
P P + AP A G RG G + T G R GP G R
Sbjct: 1000 PSGEPGKQGAPGASGDRGPPGPVGPPGLT-GPAGEPGREGSPGADGPPGRDGAAGVKGDR 1058
Query: 55 GGTGRV-----PAPPRACVCAG--SWQGHLGRA-ARVPCASHTHVGGPGPQAGPACGFRA 106
G TG V P PP + AG QG G A A+ P G G Q GP
Sbjct: 1059 GETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQ-GPQGPRGD 1117
Query: 107 LGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGG 157
G A PG G GF+ L P PPG A P + G G
Sbjct: 1118 KGEAGEPGERGLKGHRGFT-GLQGLPGPPGPSGDQGASGPAGPSGPRGPPG 1167
Score = 32.0 bits (71), Expect = 0.29
Identities = 25/74 (33%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 93 GPGPQAGPACGFRALGSAQSPGPATAAGAPGF----SRALSPGPV----PPGWRAAPRAG 144
GP GPA G PGPA +AGA G PGP PPG P A
Sbjct: 789 GPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAK 848
Query: 145 APHQRAAATGSGGS 158
A G G+
Sbjct: 849 GEQGEAGQKGDAGA 862
Score = 31.6 bits (70), Expect = 0.38
Identities = 26/73 (35%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 92 GGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPV-PPGWRAAPRAGAPHQRA 150
G PG Q P A G PGP G PG + GP PG +P A P R
Sbjct: 1002 GEPGKQGAPG----ASGDRGPPGPV---GPPGLT-----GPAGEPGREGSPGADGPPGRD 1049
Query: 151 AATGSGGSRSVGG 163
A G G R G
Sbjct: 1050 GAAGVKGDRGETG 1062
Score = 31.2 bits (69), Expect = 0.49
Identities = 41/119 (34%), Positives = 45/119 (37%), Gaps = 13/119 (10%)
Query: 48 GPCGAAR-GGTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPAC-GFR 105
GP GA+ G PP G +G G A P VG GP+ P G R
Sbjct: 729 GPKGASGPAGPPGAQGPPGLQGMPGE-RGAAGIAG--PKGDRGDVGEKGPEGAPGKDGGR 785
Query: 106 AL-GSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGG 163
L G PGPA A G G GP P A R GAP +R TG G G
Sbjct: 786 GLTGPIGPPGPAGANGEKG-----EVGPPGPAGSAGAR-GAPGER-GETGPPGPAGFAG 837
Score = 26.9 bits (58), Expect = 9.2
Identities = 30/96 (31%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 74 QGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPV 133
+G G R A G Q GPA +G A PG A GA G A G
Sbjct: 326 RGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKG--EAGPTGAR 383
Query: 134 PPGWRAAPRA--GAPHQ--RAAATGSGGSRSVGGGK 165
P PR G P A A+G+ G+ + G K
Sbjct: 384 GPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 419
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 40.4 bits (93), Expect = 8e-04
Identities = 51/162 (31%), Positives = 61/162 (37%), Gaps = 34/162 (20%)
Query: 9 QPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGA-----ARGGTGRVPAP 63
QP A G+ G+ GD GA S GP G ARG G P
Sbjct: 775 QPGAKGEQGEAGQKGD-------AGAPGPQGPSGAPGPQGPTGVTGPKGARGAQG----P 823
Query: 64 PRACVCAGSWQGHLGRAARV-PCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAP 122
P A G G A RV P S+ + G PGP GP+ G+ GP AG P
Sbjct: 824 PGAT-------GFPGAAGRVGPPGSNGNPGPPGPP-GPSGKDGPKGARGDSGPPGRAGEP 875
Query: 123 GFSRALSPGPV-PPGWRAAPRAGAPHQRAAATGSGGSRSVGG 163
G GP PPG + P P + A G G + + G
Sbjct: 876 GLQ-----GPAGPPGEKGEPGDDGP---SGAEGPPGPQGLAG 909
Score = 37.0 bits (84), Expect = 0.009
Identities = 48/159 (30%), Positives = 57/159 (35%), Gaps = 19/159 (11%)
Query: 9 QPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACV 68
+P P +PG G G+ +P S G G GA R P P+
Sbjct: 325 EPGTPGSPGPAGASGNPG-----TDGIPGAKGSAGAP--GIAGAPGFPGPRGPPGPQG-- 375
Query: 69 CAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRAL 128
A G G+ A GP + GPA A G A G A G PG
Sbjct: 376 -ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPG----- 429
Query: 129 SPGPV-PPGWRAAP-RAGAPHQ--RAAATGSGGSRSVGG 163
GP+ PPG R AP G P Q A G+ G R G
Sbjct: 430 GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG 468
Score = 36.6 bits (83), Expect = 0.012
Identities = 45/138 (32%), Positives = 51/138 (36%), Gaps = 23/138 (16%)
Query: 48 GPCGAA--RGGTGRV-PAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGF 104
GP GAA RG G+ PA P V G G A T GP GP
Sbjct: 267 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR--- 323
Query: 105 RALGSAQSPGPATA---------------AGAPGFSRALS-PGP-VPPGWRAAPRAGAPH 147
G+ SPGPA A AGAPG + A PGP PPG + A P
Sbjct: 324 GEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK 383
Query: 148 QRAAATGSGGSRSVGGGK 165
+ G G + G K
Sbjct: 384 GQTGEPGIAGFKGEQGPK 401
Score = 35.8 bits (81), Expect = 0.020
Identities = 63/189 (33%), Positives = 74/189 (39%), Gaps = 44/189 (23%)
Query: 7 PRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG--AARGGTGRV--PA 62
P +P P A G GR GD + VG PS A D + GP G ARG G + P
Sbjct: 482 PGEPGLPGARGLTGRPGDAGPQGK-VG--PSGAPG-EDGRPGPPGPQGARGQPGVMGFPG 537
Query: 63 PPRACVCAGSWQGHLGRAAR--VPCA----------SHTHVGGPGPQAGPACGFRALGSA 110
P A G G+A +P A T GP AGPA G R G
Sbjct: 538 PKGA-------NGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPA-GER--GEQ 587
Query: 111 QSPGPATAAGAPGFSRALSPGPV----PPGWRAAP-RAGAPHQRAAATGSGGSRSVGGGK 165
+PGP+ G PG PGP PG + P AGAP G G R G +
Sbjct: 588 GAPGPSGFQGLPG-----PPGPPGEGGKPGDQGVPGEAGAP----GLVGPRGERGFPGER 638
Query: 166 HLRIAQSLR 174
AQ L+
Sbjct: 639 GSPGAQGLQ 647
Score = 34.3 bits (77), Expect = 0.058
Identities = 48/171 (28%), Positives = 58/171 (33%), Gaps = 25/171 (14%)
Query: 7 PRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTG-RVPAPPR 65
P P P PG G GG+ + + G A G Q G G G R P P
Sbjct: 92 PGPPGPPGPPGPPGLGGNFAA--QMAGGFDEKA---GGAQLGVMQGPMGPMGPRGPPGPA 146
Query: 66 ACVCAGSWQGHLGRAARVPCASHTHV-GGPGPQAGPACGFRA-----LGSAQSPGPATAA 119
+QG+ G + G PGP P A G PGP A
Sbjct: 147 GAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGAR 206
Query: 120 GAPGFSRALSPG-PVPPGWRAAP-------RAGAPHQRAAATGSGGSRSVG 162
G PG +PG P G R P AGAP + + G + S G
Sbjct: 207 GFPG-----TPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPG 252
Score = 33.5 bits (75), Expect = 0.099
Identities = 29/86 (33%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 92 GGPGPQA-----GPACGFRALGSAQSPGPATAAGAPGFSRALSPG-PVPPGWRAAPRAGA 145
G PGPQ GP G +PGP G PG +PG P PPG P
Sbjct: 51 GPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPG-----TPGNPGPPGPPGPPGPPG 105
Query: 146 PHQRAAATGSGGSRSVGGGKHLRIAQ 171
AA +GG GG L + Q
Sbjct: 106 LGGNFAAQMAGGFDEKAGGAQLGVMQ 131
Score = 33.5 bits (75), Expect = 0.099
Identities = 52/171 (30%), Positives = 58/171 (33%), Gaps = 19/171 (11%)
Query: 3 PRPTPRQPTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG--------AAR 54
P P + AP A G RG G + T G R GP G R
Sbjct: 931 PSGEPGKQGAPGASGDRGPPGPVGPPGLT-GPAGEPGREGSPGADGPPGRDGAAGVKGDR 989
Query: 55 GGTGRV-----PAPPRACVCAG--SWQGHLGRA-ARVPCASHTHVGGPGPQAGPACGFRA 106
G TG V P PP + AG QG G A A+ P G G Q GP
Sbjct: 990 GETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQ-GPQGPRGD 1048
Query: 107 LGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGG 157
G A PG G GF+ L P PPG A P + G G
Sbjct: 1049 KGEAGEPGERGLKGHRGFT-GLQGLPGPPGPSGDQGASGPAGPSGPRGPPG 1098
Score = 32.0 bits (71), Expect = 0.29
Identities = 25/74 (33%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 93 GPGPQAGPACGFRALGSAQSPGPATAAGAPGF----SRALSPGPV----PPGWRAAPRAG 144
GP GPA G PGPA +AGA G PGP PPG P A
Sbjct: 720 GPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAK 779
Query: 145 APHQRAAATGSGGS 158
A G G+
Sbjct: 780 GEQGEAGQKGDAGA 793
Score = 31.6 bits (70), Expect = 0.38
Identities = 26/73 (35%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 92 GGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPV-PPGWRAAPRAGAPHQRA 150
G PG Q P A G PGP G PG + GP PG +P A P R
Sbjct: 933 GEPGKQGAPG----ASGDRGPPGPV---GPPGLT-----GPAGEPGREGSPGADGPPGRD 980
Query: 151 AATGSGGSRSVGG 163
A G G R G
Sbjct: 981 GAAGVKGDRGETG 993
Score = 31.2 bits (69), Expect = 0.49
Identities = 41/119 (34%), Positives = 45/119 (37%), Gaps = 13/119 (10%)
Query: 48 GPCGAAR-GGTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPAC-GFR 105
GP GA+ G PP G +G G A P VG GP+ P G R
Sbjct: 660 GPKGASGPAGPPGAQGPPGLQGMPGE-RGAAGIAG--PKGDRGDVGEKGPEGAPGKDGGR 716
Query: 106 AL-GSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGG 163
L G PGPA A G G GP P A R GAP +R TG G G
Sbjct: 717 GLTGPIGPPGPAGANGEKG-----EVGPPGPAGSAGAR-GAPGER-GETGPPGPAGFAG 768
Score = 26.9 bits (58), Expect = 9.2
Identities = 30/96 (31%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 74 QGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPV 133
+G G R A G Q GPA +G A PG A GA G A G
Sbjct: 257 RGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKG--EAGPTGAR 314
Query: 134 PPGWRAAPRA--GAPHQ--RAAATGSGGSRSVGGGK 165
P PR G P A A+G+ G+ + G K
Sbjct: 315 GPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 350
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,945,104
Number of Sequences: 37866
Number of extensions: 746273
Number of successful extensions: 8002
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 954
Number of HSP's that attempted gapping in prelim test: 5575
Number of HSP's gapped (non-prelim): 2900
length of query: 178
length of database: 18,247,518
effective HSP length: 96
effective length of query: 82
effective length of database: 14,612,382
effective search space: 1198215324
effective search space used: 1198215324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.