Guide to the Human Genome
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Name: LOC100130465 Sequence: fasta or formatted (178aa) NCBI GI: 239749005
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {184aa} PREDICTED: hypothetical protein
alt mRNA {178aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.4         31           3
 C cysteine            2.8          5           1
 D aspartate           1.1          2           1
 E glutamate           1.1          2           2
 F phenylalanine       1.1          2           1
 G glycine            18.0         32           3
 H histidine           3.4          6           1
 I isoleucine          1.1          2           1
 K lysine              0.6          1           1
 L leucine             5.1          9           1
 M methionine          0.6          1           1
 N asparagine          0.0          0           0
 P proline            13.5         24           2
 Q glutamine           4.5          8           1
 R arginine           10.7         19           1
 S serine              7.3         13           1
 T threonine           5.1          9           1
 V valine              4.5          8           1
 W tryptophan          2.2          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130465          1.000   PREDICTED: hypothetical protein 
LOC100130465          0.941   PREDICTED: hypothetical protein 
COL1A1                0.068   alpha 1 type I collagen preproprotein 
COL3A1                0.068   collagen type III alpha 1 preproprotein 
GATA4                 0.062   GATA binding protein 4 
C9orf75               0.062   hypothetical protein LOC286262 isoform 2 
C9orf75               0.062   hypothetical protein LOC286262 isoform 1 
SYN1                  0.056   synapsin I isoform Ib 
HCN2                  0.054   hyperpolarization activated cyclic nucleotide-gated...
SYN1                  0.054   synapsin I isoform Ia 
COL18A1               0.054   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.054   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.054   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
LOC100292576          0.054   PREDICTED: hypothetical protein 
LOC100288860          0.054   PREDICTED: hypothetical protein 
LOC100288860          0.054   PREDICTED: hypothetical protein XP_002343712 
COL10A1               0.051   type X collagen alpha 1 precursor 
LOC100293337          0.048   PREDICTED: hypothetical protein 
LOC100290919          0.048   PREDICTED: hypothetical protein XP_002347810 
LOC100288369          0.048   PREDICTED: hypothetical protein XP_002343563 
LOC645602             0.045   PREDICTED: hypothetical protein 
LOC645602             0.045   PREDICTED: hypothetical protein 
LOC645602             0.045   PREDICTED: hypothetical protein 
TPRX1                 0.045   tetra-peptide repeat homeobox 
ARID1B                0.045   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.045   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.045   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
COL2A1                0.042   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.042   collagen, type II, alpha 1 isoform 2 precursor [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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