Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239742776
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742776 PREDICTED: hypothetical protein XP_002342671 [Homo
sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742776 PREDICTED: hypothetical protein XP_002342671 [Homo ... 249 3e-67
gi|239754220 PREDICTED: hypothetical protein XP_002345913 [Homo ... 243 2e-65
gi|239748730 PREDICTED: hypothetical protein XP_002346792 [Homo ... 243 2e-65
gi|63175652 CREBBP/EP300 inhibitor 2 [Homo sapiens] 34 0.028
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 33 0.048
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 32 0.14
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 31 0.18
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 31 0.18
gi|239752588 PREDICTED: hypothetical protein XP_002348309, parti... 31 0.24
gi|120587019 zinc finger protein 318 [Homo sapiens] 30 0.31
gi|118130809 endothelial cell-specific chemotaxis regulator [Hom... 30 0.41
gi|110735445 forkhead box F1 [Homo sapiens] 30 0.53
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 30 0.53
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 30 0.53
gi|239757701 PREDICTED: hypothetical protein XP_002345525 [Homo ... 29 0.70
gi|239752186 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|239746709 PREDICTED: hypothetical protein XP_002343816 [Homo ... 29 0.70
gi|188536004 zinc finger protein 469 [Homo sapiens] 29 0.70
gi|116875842 tRNA-intron endonuclease 34 [Homo sapiens] 29 0.70
gi|116875840 tRNA-intron endonuclease 34 [Homo sapiens] 29 0.70
gi|219273466 hypothetical protein LOC29125 [Homo sapiens] 29 0.70
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 29 0.70
gi|17933774 transcription elongation factor A (SII)-like 2 [Homo... 29 0.70
gi|169216507 PREDICTED: similar to hCG1645335 [Homo sapiens] 29 0.91
gi|169216732 PREDICTED: similar to hCG1645335 [Homo sapiens] 29 0.91
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 29 0.91
gi|41406089 SRY-box 13 [Homo sapiens] 29 0.91
gi|239757861 PREDICTED: similar to armadillo repeat containing, ... 28 1.2
gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens] 28 1.2
gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens] 28 1.2
>gi|239742776 PREDICTED: hypothetical protein XP_002342671 [Homo
sapiens]
Length = 117
Score = 249 bits (636), Expect = 3e-67
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL 60
MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL
Sbjct: 1 MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL 60
Query: 61 SEGAAVPHSGRDAAWCRDAHFQWHFPSYTMSFIHVLHNPLPATGSVSHLEQPYSARL 117
SEGAAVPHSGRDAAWCRDAHFQWHFPSYTMSFIHVLHNPLPATGSVSHLEQPYSARL
Sbjct: 61 SEGAAVPHSGRDAAWCRDAHFQWHFPSYTMSFIHVLHNPLPATGSVSHLEQPYSARL 117
>gi|239754220 PREDICTED: hypothetical protein XP_002345913 [Homo
sapiens]
Length = 117
Score = 243 bits (621), Expect = 2e-65
Identities = 115/117 (98%), Positives = 115/117 (98%)
Query: 1 MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL 60
MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL
Sbjct: 1 MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL 60
Query: 61 SEGAAVPHSGRDAAWCRDAHFQWHFPSYTMSFIHVLHNPLPATGSVSHLEQPYSARL 117
SEGAAVPHSGRDAAWCRDAH QWHFPSYTMSFIHVLHNPLPATGSVSHLEQP SARL
Sbjct: 61 SEGAAVPHSGRDAAWCRDAHLQWHFPSYTMSFIHVLHNPLPATGSVSHLEQPSSARL 117
>gi|239748730 PREDICTED: hypothetical protein XP_002346792 [Homo
sapiens]
Length = 117
Score = 243 bits (621), Expect = 2e-65
Identities = 115/117 (98%), Positives = 115/117 (98%)
Query: 1 MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL 60
MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL
Sbjct: 1 MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL 60
Query: 61 SEGAAVPHSGRDAAWCRDAHFQWHFPSYTMSFIHVLHNPLPATGSVSHLEQPYSARL 117
SEGAAVPHSGRDAAWCRDAH QWHFPSYTMSFIHVLHNPLPATGSVSHLEQP SARL
Sbjct: 61 SEGAAVPHSGRDAAWCRDAHLQWHFPSYTMSFIHVLHNPLPATGSVSHLEQPSSARL 117
>gi|63175652 CREBBP/EP300 inhibitor 2 [Homo sapiens]
Length = 236
Score = 33.9 bits (76), Expect = 0.028
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 22 DEGWEGTQAQGEGGPSP----GRTARSQAGP--ASRISPAGLQVLSEGAAVPHSGRDAAW 75
+E EG A GGP P GR A ++A P A+R +P L+ AA AA
Sbjct: 40 EEAGEGAMAAARGGPVPAAREGRMAAARAAPAAAARGAPVAAAALARAAAAGRESPAAAA 99
Query: 76 CRDA 79
R+A
Sbjct: 100 AREA 103
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 33.1 bits (74), Expect = 0.048
Identities = 18/70 (25%), Positives = 27/70 (38%)
Query: 5 AGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGA 64
AG +E P+ E G + G GGP G A ++ + + EGA
Sbjct: 34 AGGEAEGPEGSEGAEEAPRGAAAVKEAGGGGPDRGPEAEARGTRGAHGETEAEEGAPEGA 93
Query: 65 AVPHSGRDAA 74
VP G + +
Sbjct: 94 EVPQGGEETS 103
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 6 GDPSEAPQAGSWVESRDEGWEGTQAQGEGGPS--PGRTARSQA-GPASRISPAGLQ 58
G P + +G EG +G A+GE GP PGRT A GP R+ P GL+
Sbjct: 1307 GPPGKRGPSGHMGREGREGEKG--AKGEPGPDGPPGRTGPMGARGPPGRVGPEGLR 1360
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 31.2 bits (69), Expect = 0.18
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 6 GDPSEAPQAGSWVESR-----DEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL 60
G P A + G R D W T + G GG P + + A PA +SPA + L
Sbjct: 53 GSPRGAEEPGKKRHERLFHRQDALWISTSSAGTGGAEPPALSPAPASPARPVSPAPGRRL 112
Query: 61 SEGAAVP 67
S A P
Sbjct: 113 SLWAVPP 119
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 31.2 bits (69), Expect = 0.18
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 10 EAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQV-LSEGAAVPH 68
EAP+A + EG E +A+GE P +A ++ P G++ +EG A P
Sbjct: 2181 EAPEAEGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPE 2240
Query: 69 S 69
S
Sbjct: 2241 S 2241
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 2 QEMAGDPSEAPQA-GSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQV 59
Q + GDP + P+ G+ + S D G + + +G G + A R +PAG +V
Sbjct: 1012 QSLEGDPGQDPEPEGALLGSSDTGPQSGEGVPQGAAPEGVSEAPAEAGADREAPAGCRV 1070
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 10 EAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQV-LSEGAAVPH 68
EAP+A + EG E A+GE P +A ++ G++ +EG A P
Sbjct: 2133 EAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELEGVEAPEAEGEAQPE 2192
Query: 69 S 69
S
Sbjct: 2193 S 2193
Score = 25.8 bits (55), Expect = 7.7
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 16/80 (20%)
Query: 10 EAPQAGSWVESRDEGWEGTQAQGEGGPSPGRT-----------ARSQAGPASR--ISPAG 56
EAP+A + EG E +A+G+ + G A +A P S +P
Sbjct: 1836 EAPEAEGEAQPESEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQPESEDVETPEA 1895
Query: 57 ---LQVLSEGAAVPHSGRDA 73
+Q SEGA P + ++A
Sbjct: 1896 EWEVQPESEGAEAPEAEKEA 1915
Score = 25.8 bits (55), Expect = 7.7
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 10 EAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGAAVPHS 69
+A +A + EG E +A+GE + G A G A S +EG A P S
Sbjct: 2086 DAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQPES 2145
>gi|239752588 PREDICTED: hypothetical protein XP_002348309, partial
[Homo sapiens]
Length = 327
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 12 PQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGAAVPHSGR 71
PQA W + + E Q +G PSP A Q GPA + P G VL+ PH+ +
Sbjct: 159 PQAPRWPPNPGKSQEDRDWQRDGLPSP--CAVGQPGPA-QAGPNGQSVLA-----PHASQ 210
Query: 72 DAAW 75
+ W
Sbjct: 211 GSQW 214
Score = 27.3 bits (59), Expect = 2.6
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 38 PGRTARSQAGPASRISPAGLQVLSEGAAVPHSGR-------DAAWCRDAHFQWHFPSYTM 90
PG AR Q + + + + V + H G+ DA WC AH H +
Sbjct: 24 PGIAARVQLARETGLPESRIHVWFQNHTARHPGQAGRAPAQDAGWCNAAHGGCHPAPSCI 83
Query: 91 SFIH 94
+F H
Sbjct: 84 AFAH 87
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 30.4 bits (67), Expect = 0.31
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 32 GEGGPSPGRTARSQAGPASRISP 54
G GGP GR++ S +GPA R SP
Sbjct: 19 GGGGPRSGRSSGSSSGPARRSSP 41
>gi|118130809 endothelial cell-specific chemotaxis regulator [Homo
sapiens]
Length = 205
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 37 SPGRTARSQAGPASRISPAGLQVLSEGAAVPHSGRDAAWCRDAHFQWHFPSYT 89
+PG S+A S +S G + GA VP SGRD RD FQ P+ T
Sbjct: 51 NPGYIPSSEANRPSHLSSTG----TPGAGVPSSGRDGGTSRDT-FQTVPPNST 98
>gi|110735445 forkhead box F1 [Homo sapiens]
Length = 379
Score = 29.6 bits (65), Expect = 0.53
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 32 GEGGPSPGRTARSQAG-PASRISPAGLQVLSEGAAVPHSGRDAAWCRDAHFQW-----HF 85
G GG + G + PAS + P G + E AV +SG AAW A +
Sbjct: 227 GCGGAAAGEYPHHDSSVPASPLLPTGAGGVMEPHAV-YSGSAAAWPPSASAALNSGASYI 285
Query: 86 PSYTMSFIHVLHNPLPATGSVSHLEQPY 113
+S + NPL + S LEQPY
Sbjct: 286 KQQPLSPCNPAANPLSGSLSTHSLEQPY 313
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 29.6 bits (65), Expect = 0.53
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 2 QEMAGDPSEAPQAGSW-------------VESRD-EGWEGTQAQGEGGPSPGRTARSQAG 47
Q+ DP+ AP G++ SRD E W+ + G+ SP R+ +
Sbjct: 214 QKTGPDPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGLRRANSV 273
Query: 48 PASRISPAGLQ 58
ASR +P +Q
Sbjct: 274 QASRPAPGSVQ 284
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 29.6 bits (65), Expect = 0.53
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 2 QEMAGDPSEAPQAGSW-------------VESRD-EGWEGTQAQGEGGPSPGRTARSQAG 47
Q+ DP+ AP G++ SRD E W+ + G+ SP R+ +
Sbjct: 210 QKTGPDPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGLRRANSV 269
Query: 48 PASRISPAGLQ 58
ASR +P +Q
Sbjct: 270 QASRPAPGSVQ 280
>gi|239757701 PREDICTED: hypothetical protein XP_002345525 [Homo
sapiens]
Length = 180
Score = 29.3 bits (64), Expect = 0.70
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 16/62 (25%)
Query: 10 EAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGAAVPHS 69
E P AG W +R E P GRTA SQ GP +P LQ + A P +
Sbjct: 34 EHPPAGGWARAR-----------EVSPGSGRTACSQCGP----TPPALQA-AGCPAPPGT 77
Query: 70 GR 71
GR
Sbjct: 78 GR 79
>gi|239752186 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 29.3 bits (64), Expect = 0.70
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 16/62 (25%)
Query: 10 EAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGAAVPHS 69
E P AG W +R E P GRTA SQ GP +P LQ + A P +
Sbjct: 34 EHPPAGGWARAR-----------EVSPGSGRTACSQCGP----TPPALQA-AGCPAPPGT 77
Query: 70 GR 71
GR
Sbjct: 78 GR 79
>gi|239746709 PREDICTED: hypothetical protein XP_002343816 [Homo
sapiens]
Length = 180
Score = 29.3 bits (64), Expect = 0.70
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 16/62 (25%)
Query: 10 EAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGAAVPHS 69
E P AG W +R E P GRTA SQ GP +P LQ + A P +
Sbjct: 34 EHPPAGGWARAR-----------EVSPGSGRTACSQCGP----TPPALQA-AGCPAPPGT 77
Query: 70 GR 71
GR
Sbjct: 78 GR 79
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 27 GTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGAAVP 67
G +QG G P PG ++ G S+ PA Q+ SE A P
Sbjct: 3701 GPSSQGSGSPRPG----TKTGGGSQPQPASGQLQSETATTP 3737
>gi|116875842 tRNA-intron endonuclease 34 [Homo sapiens]
Length = 310
Score = 29.3 bits (64), Expect = 0.70
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 3 EMAGDPSEAPQAGSWVESRDEGWEGTQAQGE---GGPSPGRTARSQAGPASRISP 54
E A S + +AGS ++++ QA GE GPS SQAGP++ ++P
Sbjct: 128 EQASGASSSQEAGSSQAAKEDETSDGQASGEQEEAGPSS-----SQAGPSNGVAP 177
>gi|116875840 tRNA-intron endonuclease 34 [Homo sapiens]
Length = 310
Score = 29.3 bits (64), Expect = 0.70
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 3 EMAGDPSEAPQAGSWVESRDEGWEGTQAQGE---GGPSPGRTARSQAGPASRISP 54
E A S + +AGS ++++ QA GE GPS SQAGP++ ++P
Sbjct: 128 EQASGASSSQEAGSSQAAKEDETSDGQASGEQEEAGPSS-----SQAGPSNGVAP 177
>gi|219273466 hypothetical protein LOC29125 [Homo sapiens]
Length = 178
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 16 SWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGAAVP 67
S VE D W GT PG +R Q P S + PA Q + GA VP
Sbjct: 76 SGVEPPDR-WTGT---------PGWPSRDQEAPGSMMPPAAAQPSAHGALVP 117
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 22 DEGWEGTQAQGEGGPSPGRTARSQAGPAS--RISPAGLQVLSEGAAVPHS 69
D G+ G+ + G GPS R + P S SP+ +V+ AAVP S
Sbjct: 137 DSGFSGSSSYGRLGPSEPRGIYASERPKSLGDASPSAPEVVGARAAVPRS 186
>gi|17933774 transcription elongation factor A (SII)-like 2 [Homo
sapiens]
Length = 227
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 13 QAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAG 56
Q GS E + E G +A+GEG P R S+ P S AG
Sbjct: 85 QGGSKTEGKPE--RGGRAEGEGEPDSEREPESEGEPESETRAAG 126
>gi|169216507 PREDICTED: similar to hCG1645335 [Homo sapiens]
Length = 409
Score = 28.9 bits (63), Expect = 0.91
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 1 MQEMAGDPSEAPQAGSW----VESRDEGW-EGTQAQGEGGPS-PGRTARSQAGPASRISP 54
M+ A P+ + Q +W VES D + + AQG + PG ++A A++ +
Sbjct: 277 MEAWAAFPARSQQGVAWAAAPVESEDPAAAQASPAQGNASEAGPGAEDAAEAASATKEAA 336
Query: 55 AGLQVLSEGAAVPHSGRDAAWCRDAHFQW 83
G EG + P R W
Sbjct: 337 RGAPAAGEGESAPAGPEGLGQARPIEVPW 365
>gi|169216732 PREDICTED: similar to hCG1645335 [Homo sapiens]
Length = 409
Score = 28.9 bits (63), Expect = 0.91
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 1 MQEMAGDPSEAPQAGSW----VESRDEGW-EGTQAQGEGGPS-PGRTARSQAGPASRISP 54
M+ A P+ + Q +W VES D + + AQG + PG ++A A++ +
Sbjct: 277 MEAWAAFPARSQQGVAWAAAPVESEDPAAAQASPAQGNASEAGPGAEDAAEAASATKEAA 336
Query: 55 AGLQVLSEGAAVPHSGRDAAWCRDAHFQW 83
G EG + P R W
Sbjct: 337 RGAPAAGEGESAPAGPEGLGQARPIEVPW 365
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 28.9 bits (63), Expect = 0.91
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 19 ESRDEGWEGTQAQGEG--GPSPGRTARSQAGPASRISPAGLQVLSEGAAVP 67
+S + G E +A+G GP PG R A A+R AG + SE A VP
Sbjct: 136 DSPETGEEMGRAEGAWPRGPGPGAVQREAAELAARGPAAGTEEASELAEVP 186
>gi|41406089 SRY-box 13 [Homo sapiens]
Length = 622
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 6 GDPSEAPQAGSWVESRDEG-----WEGTQAQGEGGPSPGRTARSQAGPASR 51
GDP+ A Q + ++ +G W+ + +G G P P R S+A S+
Sbjct: 49 GDPARASQDSADPQAPAQGNFRGSWDCSSPEGNGSPEPKRPGVSEAASGSQ 99
>gi|239757861 PREDICTED: similar to armadillo repeat containing,
X-linked 4 [Homo sapiens]
Length = 2382
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 13 QAGSWV------ESRDEGWEGTQAQGEGGPSPGRTARSQAG----PASRIS 53
QA W ++ W G Q GG PG T +S AG P S++S
Sbjct: 1597 QASGWFCVCPGSQTNGGSWGGASGQDVGGSRPGPTNQSSAGSWDSPGSQVS 1647
>gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]
Length = 1083
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 8 PSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGAAVP 67
PS +PQ+ V G++ T + P+P A QA P+ SP G ++ GA P
Sbjct: 900 PSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMA-YQASPSP--SPVGYSPMTPGAPSP 956
>gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 8 PSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGAAVP 67
PS +PQ+ V G++ T + P+P A QA P+ SP G ++ GA P
Sbjct: 904 PSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMA-YQASPSP--SPVGYSPMTPGAPSP 960
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,765,253
Number of Sequences: 37866
Number of extensions: 292100
Number of successful extensions: 1301
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 1209
Number of HSP's gapped (non-prelim): 208
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.