Guide to the Human Genome
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Name: LOC100291078 Sequence: fasta or formatted (117aa) NCBI GI: 239748730
Description:

PREDICTED: hypothetical protein XP_002346792

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         15           2
 C cysteine            0.9          1           1
 D aspartate           3.4          4           1
 E glutamate           6.8          8           1
 F phenylalanine       1.7          2           1
 G glycine            11.1         13           2
 H histidine           5.1          6           1
 I isoleucine          1.7          2           1
 K lysine              0.0          0           0
 L leucine             6.0          7           1
 M methionine          2.6          3           1
 N asparagine          0.9          1           1
 P proline             9.4         11           1
 Q glutamine           6.8          8           1
 R arginine            6.0          7           1
 S serine             12.8         15           2
 T threonine           3.4          4           1
 V valine              4.3          5           1
 W tryptophan          3.4          4           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346792 
LOC100291696          1.000   PREDICTED: hypothetical protein XP_002345913 
LOC100288082          0.982   PREDICTED: hypothetical protein XP_002342671 
EID2                  0.045   CREBBP/EP300 inhibitor 2 
LOC100292406          0.036   PREDICTED: hypothetical protein 
LOC100291258          0.036   PREDICTED: hypothetical protein XP_002346915 
LOC100288357          0.036   PREDICTED: hypothetical protein XP_002342745 
LOC100288357          0.036   PREDICTED: hypothetical protein 
CLIC6                 0.036   chloride intracellular channel 6 
COL5A3                0.032   collagen, type V, alpha 3 preproprotein 
AGAP2                 0.027   centaurin, gamma 1 isoform PIKE-L 
RP1L1                 0.027   retinitis pigmentosa 1-like 1 
LOC100290397          0.027   PREDICTED: hypothetical protein XP_002348309, parti...
ZNF318                0.023   zinc finger protein 318 
ECSCR                 0.023   endothelial cell-specific chemotaxis regulator [Hom...
LOC649238             0.023   PREDICTED: similar to hCG1645335 
LOC649238             0.023   PREDICTED: similar to hCG1645335 
RPH3A                 0.023   rabphilin 3A homolog isoform 1 
RPH3A                 0.023   rabphilin 3A homolog isoform 2 
LOC100291756          0.018   PREDICTED: hypothetical protein XP_002345525 
LOC100288538          0.018   PREDICTED: hypothetical protein 
LOC100288538          0.018   PREDICTED: hypothetical protein XP_002343816 
ZNF469                0.018   zinc finger protein 469 
TSEN34                0.018   tRNA-intron endonuclease 34 
TSEN34                0.018   tRNA-intron endonuclease 34 
C11orf21              0.018   hypothetical protein LOC29125 
DACT3                 0.018   thymus expressed gene 3-like 
TCEAL2                0.018   transcription elongation factor A (SII)-like 2 [Homo...
ACSS3                 0.018   acyl-CoA synthetase short-chain family member 3 [Hom...
HMX1                  0.018   homeo box (H6 family) 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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