Guide to the Human Genome
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Name: LOC649238 Sequence: fasta or formatted (409aa) NCBI GI: 169216732
Description:

PREDICTED: similar to hCG1645335

Referenced in:

Additional Brain Proteins
Testes and Sperm

Other entries for this name:
alt prot [409aa] PREDICTED: similar to hCG1645335
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.7         56           3
 C cysteine            2.0          8           1
 D aspartate           3.2         13           2
 E glutamate           9.5         39           3
 F phenylalanine       3.4         14           1
 G glycine             8.3         34           2
 H histidine           1.5          6           1
 I isoleucine          2.0          8           1
 K lysine              2.9         12           2
 L leucine            12.0         49           2
 M methionine          2.0          8           1
 N asparagine          2.0          8           1
 P proline             8.3         34           4
 Q glutamine           4.9         20           2
 R arginine            7.6         31           2
 S serine              5.9         24           2
 T threonine           2.0          8           1
 V valine              4.9         20           2
 W tryptophan          3.2         13           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1645335 
LOC649238             0.995   PREDICTED: similar to hCG1645335 
LOC649201             0.745   PREDICTED: similar to paraneoplastic antigen MA1 [H...
LOC649201             0.744   PREDICTED: similar to paraneoplastic antigen MA1 [H...
LOC649201             0.744   PREDICTED: similar to paraneoplastic antigen MA1 [H...
LOC100287500          0.305   PREDICTED: hypothetical protein XP_002343900 
PNMA6A                0.305   paraneoplastic antigen like 6A 
LOC100287466          0.302   PREDICTED: hypothetical protein XP_002343899 
LOC100287428          0.302   PREDICTED: hypothetical protein XP_002343898 
PNMA3                 0.208   paraneoplastic cancer-testis-brain antigen 
PNMA5                 0.198   paraneoplastic antigen like 5 
PNMA5                 0.198   paraneoplastic antigen like 5 
PNMA5                 0.198   paraneoplastic antigen like 5 
LOC100128960          0.187   PREDICTED: similar to paraneoplastic antigen MA2 [H...
LOC100128960          0.186   PREDICTED: similar to Putative paraneoplastic antig...
PNMA1                 0.174   paraneoplastic antigen MA1 
MOAP1                 0.155   modulator of apoptosis 1 
PNMA2                 0.139   paraneoplastic antigen MA2 
ZCCHC12               0.106   zinc finger, CCHC domain containing 12 
ZCCHC18               0.103   zinc finger, CCHC domain containing 18 
PNMAL1                0.095   PNMA-like 1 isoform b 
PNMAL1                0.095   PNMA-like 1 isoform a 
PNMAL2                0.069   PNMA-like 2 
TMPRSS13              0.021   transmembrane protease, serine 13 
FAM48B1               0.020   hypothetical protein LOC100130302 
MARCKS                0.017   myristoylated alanine-rich protein kinase C substra...
FCAMR                 0.017   Fc receptor, IgA, IgM, high affinity isoform 2 [Hom...
KRTAP4-6              0.017   PREDICTED: keratin associated protein 4.6 
UBQLN4                0.017   ataxin-1 ubiquitin-like interacting protein 
C8orf47               0.017   hypothetical protein LOC203111 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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