Guide to the Human Genome
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Name: LOC100288538 Sequence: fasta or formatted (180aa) NCBI GI: 239746709
Description:

PREDICTED: hypothetical protein XP_002343816

Not currently referenced in the text

Other entries for this name:
alt mRNA {180aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         24           2
 C cysteine            3.3          6           1
 D aspartate           1.7          3           1
 E glutamate           1.7          3           1
 F phenylalanine       1.7          3           1
 G glycine            12.2         22           2
 H histidine           1.7          3           1
 I isoleucine          2.2          4           1
 K lysine              2.8          5           2
 L leucine             6.7         12           2
 M methionine          3.3          6           1
 N asparagine          1.7          3           1
 P proline            10.6         19           2
 Q glutamine           6.1         11           2
 R arginine            7.8         14           1
 S serine             13.9         25           2
 T threonine           5.0          9           1
 V valine              3.3          6           1
 W tryptophan          0.6          1           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343816 
LOC100291756          1.000   PREDICTED: hypothetical protein XP_002345525 
LOC100288538          1.000   PREDICTED: hypothetical protein 
LOC100292576          0.053   PREDICTED: hypothetical protein 
LOC100288860          0.053   PREDICTED: hypothetical protein 
LOC100288860          0.053   PREDICTED: hypothetical protein XP_002343712 
LOC100289408          0.041   PREDICTED: hypothetical protein 
LOC100289408          0.041   PREDICTED: hypothetical protein XP_002344217 
GLCCI1                0.035   glucocorticoid induced transcript 1 
PCLO                  0.035   piccolo isoform 2 
PCLO                  0.035   piccolo isoform 1 
LOC100289316          0.032   PREDICTED: hypothetical protein 
LOC100131102          0.032   PREDICTED: hypothetical protein 
LOC100289316          0.032   PREDICTED: hypothetical protein XP_002343619 
LOC100131102          0.029   PREDICTED: hypothetical protein 
RGS12                 0.029   regulator of G-protein signalling 12 isoform 1 [Homo...
RGS12                 0.029   regulator of G-protein signalling 12 isoform 3 [Homo...
LOC100293848          0.026   PREDICTED: hypothetical protein 
LOC100290829          0.026   PREDICTED: hypothetical protein XP_002346522 
LOC100288535          0.026   PREDICTED: hypothetical protein XP_002342360 
INF2                  0.026   inverted formin 2 isoform 2 
INF2                  0.026   inverted formin 2 isoform 1 
TMEM108               0.026   transmembrane protein 108 
TMEM108               0.026   transmembrane protein 108 
FGF5                  0.023   fibroblast growth factor 5 isoform 2 precursor [Homo...
FGF5                  0.023   fibroblast growth factor 5 isoform 1 precursor [Homo...
SHROOM2               0.023   apical protein of Xenopus-like 
C8orf73               0.023   hypothetical protein LOC642475 
LOC390595             0.021   PREDICTED: similar to ubiquitin-associated protein ...
LOC100131102          0.021   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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