BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239742674 PREDICTED: hypothetical protein XP_002342580 [Homo sapiens] (125 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239742674 PREDICTED: hypothetical protein XP_002342580 [Homo ... 257 2e-69 gi|239754100 PREDICTED: hypothetical protein XP_002345880 [Homo ... 254 2e-68 gi|239748649 PREDICTED: hypothetical protein [Homo sapiens] 254 2e-68 gi|169214887 PREDICTED: similar to hCG2017976 [Homo sapiens] 34 0.025 gi|169215118 PREDICTED: hypothetical protein [Homo sapiens] 34 0.025 gi|169214613 PREDICTED: similar to hCG2017976 [Homo sapiens] 34 0.025 gi|239746480 PREDICTED: hypothetical protein XP_002343771 [Homo ... 34 0.025 gi|5729858 nuclear receptor coactivator 2 [Homo sapiens] 34 0.033 gi|197276600 microtubule-associated protein 4 isoform 4 [Homo sa... 33 0.043 gi|47519639 microtubule-associated protein 4 isoform 1 [Homo sap... 33 0.043 gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 32 0.095 gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 32 0.095 gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 32 0.095 gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 32 0.095 gi|18104952 T-box 1 isoform C [Homo sapiens] 32 0.095 gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens] 32 0.095 gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens] 32 0.12 gi|163965366 nascent polypeptide-associated complex alpha subuni... 32 0.12 gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 31 0.21 gi|31543148 hypothetical protein LOC79173 [Homo sapiens] 31 0.21 gi|48762934 alpha 2 type I collagen [Homo sapiens] 31 0.28 gi|8923887 zinc finger protein 395 [Homo sapiens] 31 0.28 gi|239755362 PREDICTED: hypothetical protein [Homo sapiens] 31 0.28 gi|199559779 coiled-coil domain containing 8 [Homo sapiens] 30 0.36 gi|169217788 PREDICTED: similar to putative DUX4 protein [Homo s... 30 0.47 gi|89062404 PREDICTED: similar to putative DUX4 protein [Homo sa... 30 0.47 gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 30 0.47 gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 30 0.47 gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 30 0.47 gi|27544941 myosin IF [Homo sapiens] 30 0.47 >gi|239742674 PREDICTED: hypothetical protein XP_002342580 [Homo sapiens] Length = 125 Score = 257 bits (656), Expect = 2e-69 Identities = 125/125 (100%), Positives = 125/125 (100%) Query: 1 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC 60 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC Sbjct: 1 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC 60 Query: 61 SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFFTPRLLASSPRHPGV 120 SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFFTPRLLASSPRHPGV Sbjct: 61 SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFFTPRLLASSPRHPGV 120 Query: 121 PSDGR 125 PSDGR Sbjct: 121 PSDGR 125 >gi|239754100 PREDICTED: hypothetical protein XP_002345880 [Homo sapiens] Length = 125 Score = 254 bits (648), Expect = 2e-68 Identities = 124/125 (99%), Positives = 124/125 (99%) Query: 1 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC 60 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC Sbjct: 1 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC 60 Query: 61 SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFFTPRLLASSPRHPGV 120 SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAF TPRLLASSPRHPGV Sbjct: 61 SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPRLLASSPRHPGV 120 Query: 121 PSDGR 125 PSDGR Sbjct: 121 PSDGR 125 >gi|239748649 PREDICTED: hypothetical protein [Homo sapiens] Length = 125 Score = 254 bits (648), Expect = 2e-68 Identities = 124/125 (99%), Positives = 124/125 (99%) Query: 1 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC 60 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC Sbjct: 1 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC 60 Query: 61 SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFFTPRLLASSPRHPGV 120 SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAF TPRLLASSPRHPGV Sbjct: 61 SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPRLLASSPRHPGV 120 Query: 121 PSDGR 125 PSDGR Sbjct: 121 PSDGR 125 >gi|169214887 PREDICTED: similar to hCG2017976 [Homo sapiens] Length = 271 Score = 34.3 bits (77), Expect = 0.025 Identities = 39/111 (35%), Positives = 47/111 (42%), Gaps = 11/111 (9%) Query: 21 LSRSQTSRGPAQPSKGGPGVLGS-KSSLGRGPTGTLVGLPCSRSRQ----TLPGAEWRCE 75 L + S G QP++G PGV K + G L+G PCS + LP R Sbjct: 35 LLKEDPSSGSLQPAEGQPGVKSEWKGAKVGADIGYLIG-PCSSAADILPPILPAGTPRPG 93 Query: 76 AAEAREGLTRKSRLPVVPYATLWVRG-VEA---FFTPRLLASSPRHPGVPS 122 AA R R SR P+ A + RG EA P L A PR PG S Sbjct: 94 AASCRPFCPRGSRGPMPYPAARFARGEAEARRRILPPVLPAGKPR-PGAVS 143 >gi|169215118 PREDICTED: hypothetical protein [Homo sapiens] Length = 271 Score = 34.3 bits (77), Expect = 0.025 Identities = 39/111 (35%), Positives = 47/111 (42%), Gaps = 11/111 (9%) Query: 21 LSRSQTSRGPAQPSKGGPGVLGS-KSSLGRGPTGTLVGLPCSRSRQ----TLPGAEWRCE 75 L + S G QP++G PGV K + G L+G PCS + LP R Sbjct: 35 LLKEDPSSGSLQPAEGQPGVKSEWKGAKVGADIGYLIG-PCSSAADILPPILPAGTPRPG 93 Query: 76 AAEAREGLTRKSRLPVVPYATLWVRG-VEA---FFTPRLLASSPRHPGVPS 122 AA R R SR P+ A + RG EA P L A PR PG S Sbjct: 94 AASCRPFCPRGSRGPMPYPAARFARGEAEARRRILPPVLPAGKPR-PGAVS 143 >gi|169214613 PREDICTED: similar to hCG2017976 [Homo sapiens] Length = 289 Score = 34.3 bits (77), Expect = 0.025 Identities = 39/111 (35%), Positives = 47/111 (42%), Gaps = 11/111 (9%) Query: 21 LSRSQTSRGPAQPSKGGPGVLGS-KSSLGRGPTGTLVGLPCSRSRQ----TLPGAEWRCE 75 L + S G QP++G PGV K + G L+G PCS + LP R Sbjct: 53 LLKEDPSSGSLQPAEGQPGVKSEWKGAKVGADIGYLIG-PCSSAADILPPILPAGTPRPG 111 Query: 76 AAEAREGLTRKSRLPVVPYATLWVRG-VEA---FFTPRLLASSPRHPGVPS 122 AA R R SR P+ A + RG EA P L A PR PG S Sbjct: 112 AASCRPFCPRGSRGPMPYPAARFARGEAEARRRILPPVLPAGKPR-PGAVS 161 >gi|239746480 PREDICTED: hypothetical protein XP_002343771 [Homo sapiens] Length = 130 Score = 34.3 bits (77), Expect = 0.025 Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 10/93 (10%) Query: 27 SRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCSRSRQTLPGAEWRCEAAEAREGLTRK 86 S PA + P G S++ GP G P S S LPGA A+ARE L Sbjct: 35 SASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTSFS---LPGALPTTTCAKARENL--- 88 Query: 87 SRLPVVPYATLWVR---GVEAFFTPRLLASSPR 116 +L V +T+ +R ++ F P LLA PR Sbjct: 89 -QLRDVLSSTVCLRFSPQKKSVFPPELLAVPPR 120 >gi|5729858 nuclear receptor coactivator 2 [Homo sapiens] Length = 1464 Score = 33.9 bits (76), Expect = 0.033 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%) Query: 17 PAPALSRSQTSRGPAQPSK-GGPGVLGSKSSLGRGPTGTLVGLPCSRSRQTLPGAEWRCE 75 P P + S QP G G++G++ +LG TG + S SR T+P EW + Sbjct: 901 PFPPIRNSSPYSVIPQPGMMGNQGMIGNQGNLGNSSTGMIGN---SASRPTMPSGEWAPQ 957 Query: 76 AAEAR 80 ++ R Sbjct: 958 SSAVR 962 >gi|197276600 microtubule-associated protein 4 isoform 4 [Homo sapiens] Length = 1135 Score = 33.5 bits (75), Expect = 0.043 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 13/115 (11%) Query: 14 PCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCSRSRQTLPGAEWR 73 PC P+ S+TS G A+P +G P V G+ + + P LP S ++T P A + Sbjct: 653 PCNSQPSELSSETS-GIARPEEGRPVVSGTGNDITTPPNKE---LPPSPEKKTKPLATTQ 708 Query: 74 CEAAEAREGLTRKSRLPVVPYATLWVRGVEAFFTPRLLASS------PRHPGVPS 122 + T+ + LP P T + G+ P LAS P+ P V S Sbjct: 709 PAKTSTSKAKTQPTSLPKQPAPTT-IGGLNK--KPMSLASGLVPAAPPKRPAVAS 760 >gi|47519639 microtubule-associated protein 4 isoform 1 [Homo sapiens] Length = 1152 Score = 33.5 bits (75), Expect = 0.043 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 13/115 (11%) Query: 14 PCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCSRSRQTLPGAEWR 73 PC P+ S+TS G A+P +G P V G+ + + P LP S ++T P A + Sbjct: 653 PCNSQPSELSSETS-GIARPEEGRPVVSGTGNDITTPPNKE---LPPSPEKKTKPLATTQ 708 Query: 74 CEAAEAREGLTRKSRLPVVPYATLWVRGVEAFFTPRLLASS------PRHPGVPS 122 + T+ + LP P T + G+ P LAS P+ P V S Sbjct: 709 PAKTSTSKAKTQPTSLPKQPAPTT-IGGLNK--KPMSLASGLVPAAPPKRPAVAS 760 >gi|189181724 proteoglycan 4 isoform D [Homo sapiens] Length = 1270 Score = 32.3 bits (72), Expect = 0.095 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 8/114 (7%) Query: 12 TSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLG---RGPTGTLVGLPCSRSRQTLP 68 T+P +PAP T++GP + P K + + P T P + +T P Sbjct: 658 TTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTTPETPP 717 Query: 69 GAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFFTPRLLASSPRHPGVPS 122 +E T K + + A TP+ L +SP+ PGVP+ Sbjct: 718 PT-----TSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALENSPKEPGVPT 766 >gi|189181722 proteoglycan 4 isoform C [Homo sapiens] Length = 1311 Score = 32.3 bits (72), Expect = 0.095 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 8/114 (7%) Query: 12 TSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLG---RGPTGTLVGLPCSRSRQTLP 68 T+P +PAP T++GP + P K + + P T P + +T P Sbjct: 699 TTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTTPETPP 758 Query: 69 GAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFFTPRLLASSPRHPGVPS 122 +E T K + + A TP+ L +SP+ PGVP+ Sbjct: 759 PT-----TSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALENSPKEPGVPT 807 >gi|189181720 proteoglycan 4 isoform B [Homo sapiens] Length = 1363 Score = 32.3 bits (72), Expect = 0.095 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 8/114 (7%) Query: 12 TSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLG---RGPTGTLVGLPCSRSRQTLP 68 T+P +PAP T++GP + P K + + P T P + +T P Sbjct: 751 TTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTTPETPP 810 Query: 69 GAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFFTPRLLASSPRHPGVPS 122 +E T K + + A TP+ L +SP+ PGVP+ Sbjct: 811 PT-----TSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALENSPKEPGVPT 859 >gi|67190163 proteoglycan 4 isoform A [Homo sapiens] Length = 1404 Score = 32.3 bits (72), Expect = 0.095 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 8/114 (7%) Query: 12 TSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLG---RGPTGTLVGLPCSRSRQTLP 68 T+P +PAP T++GP + P K + + P T P + +T P Sbjct: 792 TTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTTPETPP 851 Query: 69 GAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFFTPRLLASSPRHPGVPS 122 +E T K + + A TP+ L +SP+ PGVP+ Sbjct: 852 PT-----TSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALENSPKEPGVPT 900 >gi|18104952 T-box 1 isoform C [Homo sapiens] Length = 495 Score = 32.3 bits (72), Expect = 0.095 Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 14/85 (16%) Query: 13 SPCEPAPALSRSQTSRGPAQPSKGGPGVLG-------------SKSSLGRGPTGTLVGLP 59 SP +P+ + +R Q GGP VLG S S G G G LV LP Sbjct: 327 SPTQPSGTEKDAAEARREFQRDAGGPAVLGDPAHPPQLLARVLSPSLPGAGGAGGLVPLP 386 Query: 60 -CSRSRQTLPGAEWRCEAAEAREGL 83 R + P E R EA A E L Sbjct: 387 GAPGGRPSPPNPELRLEAPGASEPL 411 >gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens] Length = 803 Score = 32.3 bits (72), Expect = 0.095 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 7/60 (11%) Query: 7 PAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCSRSRQT 66 P + P EPAPA + + + GPA LG + LG GP L P ++ QT Sbjct: 229 PDLLLAEPAEPAPAPAPEEEAEGPA-------AALGPRGPLGSGPGVVLYLCPEAQCGQT 281 >gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens] Length = 393 Score = 32.0 bits (71), Expect = 0.12 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 9/97 (9%) Query: 26 TSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCSRSRQTLPGAEWRCEAAEAREGLT- 84 TS+GP QPS G +++LG PT + + P + PG+ +A ++ G+ Sbjct: 190 TSQGPRQPSSSGAKRRRLRAALGPQPTRSALRFPSAS-----PGS---LKAKQSMAGIPG 241 Query: 85 RKSRLPVVPYATLWVRGVEAFFTPRLLASSPRHPGVP 121 R+S P VP +L + R A P G P Sbjct: 242 RESNAPSVPTVSLLPGAPGGNASSRTEAQVPNGQGSP 278 >gi|163965366 nascent polypeptide-associated complex alpha subunit isoform a [Homo sapiens] Length = 2078 Score = 32.0 bits (71), Expect = 0.12 Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 10/116 (8%) Query: 7 PAVSFTSPCEPA-PALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCSRSRQ 65 PA +P P P+ + T R P P P L P+ LV P + Q Sbjct: 480 PAALVMAPVAPKEPSTQVATTLRIPVSPPLPDP------EDLKNLPSSVLVKFPTQKDLQ 533 Query: 66 TLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFFTPRLLASSPRHPGVP 121 T+P + + A+ GLT K V+P + +F + +SSP P P Sbjct: 534 TVPASLEGAPFSPAQAGLTTKKDPTVLPLVQAAPKNSPSF---QSTSSSPEIPLSP 586 >gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] Length = 1499 Score = 31.2 bits (69), Expect = 0.21 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 13/54 (24%) Query: 28 RGPAQPSKGGPGVLGSKSSLGR-------GPTGT-----LVGLPCSRSRQTLPG 69 RGPA P GGPG G G+ GP GT +VG+P R + +PG Sbjct: 956 RGPAGPP-GGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPG 1008 Score = 27.3 bits (59), Expect = 3.1 Identities = 34/128 (26%), Positives = 45/128 (35%), Gaps = 18/128 (14%) Query: 14 PCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGR-GPTGTL--------VGLPCSRSR 64 P EP +R T Q +G G LG+ GR GP G++ +GLP + Sbjct: 563 PGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGS 622 Query: 65 QTLPGAEWRC--------EAAEAREGLTRKSRLPVVPYATLWVRGVEAFFTPRLLASSPR 116 PG A ++G S PV P RG + P P Sbjct: 623 SGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSG-PVGPPGLAGERGEQGPPGPTGFQGLPG 681 Query: 117 HPGVPSDG 124 PG P +G Sbjct: 682 PPGPPGEG 689 >gi|31543148 hypothetical protein LOC79173 [Homo sapiens] Length = 637 Score = 31.2 bits (69), Expect = 0.21 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 5 GVPAVSFTSPCE-PAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCS 61 GVP ++P PAP L + P ++G P + S +GR GT L CS Sbjct: 275 GVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCS 332 >gi|48762934 alpha 2 type I collagen [Homo sapiens] Length = 1366 Score = 30.8 bits (68), Expect = 0.28 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 8/50 (16%) Query: 27 SRGPAQP-----SKGGPGVLGSKSSLGRGPTGTLVGLPCSRSRQTLPGAE 71 SRGP+ P +KG PGV+G+ + GP+G GLP R +PG + Sbjct: 608 SRGPSGPPGPDGNKGEPGVVGAVGT--AGPSGP-SGLPGERGAAGIPGGK 654 Score = 26.6 bits (57), Expect = 5.2 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 15/49 (30%) Query: 36 GGPGVLGSKSSLGR----GPTGT-----------LVGLPCSRSRQTLPG 69 G PG G K G GP GT ++GLP SR + LPG Sbjct: 838 GPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPG 886 >gi|8923887 zinc finger protein 395 [Homo sapiens] Length = 513 Score = 30.8 bits (68), Expect = 0.28 Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 8/93 (8%) Query: 2 AVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCS 61 A AG P V T EPAP S + P P L S G G LP Sbjct: 339 AAAGTP-VPGTPTSEPAPTPSMT------GLPLSALPPPLHKAQSSGPEHPGPESSLPSG 391 Query: 62 RSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPY 94 ++ PG+ W +A A + L ++PV P+ Sbjct: 392 ALSKSAPGSFWHIQADHAYQALP-SFQIPVSPH 423 >gi|239755362 PREDICTED: hypothetical protein [Homo sapiens] Length = 112 Score = 30.8 bits (68), Expect = 0.28 Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 22/118 (18%) Query: 17 PAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTL-------VGLPCSRSRQTLPG 69 P+PAL S A GPGVL +++L R T G+ C RS G Sbjct: 6 PSPALHASTPQLFSAFGRLMGPGVLEQRAALVRDSTAVQEPRRRGGSGMACCRSPALPHG 65 Query: 70 AEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFFTPRLLAS--SPRHPGVPSDGR 125 E AEAR+ R+ P V + P+LLA SP PG S G+ Sbjct: 66 -----EVAEARQKFQREVSGPAVV--------GDPAPPPQLLAQVLSPSLPGASSAGQ 110 >gi|199559779 coiled-coil domain containing 8 [Homo sapiens] Length = 538 Score = 30.4 bits (67), Expect = 0.36 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 18/93 (19%) Query: 16 EPAPALSRSQTSRGPAQPSK----------GGPGVLGSKSSLGRGPTGTLVGLPCSRSRQ 65 E APA+ + R A+ + G PG+ ++ S +G TGT G + + Sbjct: 417 ERAPAVQGADNQRAQARAGQRAEAAHNQRAGAPGIQEAEVSAAQGTTGTAPGARARKQVK 476 Query: 66 TL----PGA-EWRCEAAEAREGLTRKSRLPVVP 93 T+ PG W C + R RLP +P Sbjct: 477 TVRFQTPGRFSWFC---KRRRAFWHTPRLPTLP 506 >gi|169217788 PREDICTED: similar to putative DUX4 protein [Homo sapiens] Length = 422 Score = 30.0 bits (66), Expect = 0.47 Identities = 32/134 (23%), Positives = 46/134 (34%), Gaps = 28/134 (20%) Query: 11 FTSPCEPAPALSRSQTSRGPAQPSKG------------GPGVLGSKSSLGRGPTGT-LVG 57 + +P P ALS Q R PA P K GP +G P G ++ Sbjct: 241 YATPTPPEGALSHPQAPRWPAHPGKSREDRELQLDGLPGPCTVGQPGPAQARPQGQGVLA 300 Query: 58 LPCSRSR--------QTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFFTPR 109 +P S+ + A W +A A R P P A+ W ++ P Sbjct: 301 IPASQGSPWWGWGQGPQVARAAWEPQAGAA------PPRQPAPPEASAWQGQMQGIPVPT 354 Query: 110 LLASSP-RHPGVPS 122 + P R +PS Sbjct: 355 EVLQEPGRSSALPS 368 >gi|89062404 PREDICTED: similar to putative DUX4 protein [Homo sapiens] Length = 422 Score = 30.0 bits (66), Expect = 0.47 Identities = 32/134 (23%), Positives = 46/134 (34%), Gaps = 28/134 (20%) Query: 11 FTSPCEPAPALSRSQTSRGPAQPSKG------------GPGVLGSKSSLGRGPTGT-LVG 57 + +P P ALS Q R PA P K GP +G P G ++ Sbjct: 241 YATPTPPEGALSHPQAPRWPAHPGKSREDRELQLDGLPGPCTVGQPGPAQARPQGQGVLA 300 Query: 58 LPCSRSR--------QTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFFTPR 109 +P S+ + A W +A A R P P A+ W ++ P Sbjct: 301 IPASQGSPWWGWGRGPQVARAAWEPQAGAA------PPRQPAPPEASAWQGQMQGIPVPT 354 Query: 110 LLASSP-RHPGVPS 122 + P R +PS Sbjct: 355 EVLQEPGRSSALPS 368 >gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo sapiens] Length = 1650 Score = 30.0 bits (66), Expect = 0.47 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 9/61 (14%) Query: 19 PALSRSQTSRGPAQPSKGGPGVLGSKSSLG----RGPTGT-----LVGLPCSRSRQTLPG 69 PA S R + +KG PG +G+ G GP G L GLP S +Q PG Sbjct: 1236 PAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPG 1295 Query: 70 A 70 A Sbjct: 1296 A 1296 >gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo sapiens] Length = 1629 Score = 30.0 bits (66), Expect = 0.47 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 9/61 (14%) Query: 19 PALSRSQTSRGPAQPSKGGPGVLGSKSSLG----RGPTGT-----LVGLPCSRSRQTLPG 69 PA S R + +KG PG +G+ G GP G L GLP S +Q PG Sbjct: 1215 PAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPG 1274 Query: 70 A 70 A Sbjct: 1275 A 1275 >gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo sapiens] Length = 1736 Score = 30.0 bits (66), Expect = 0.47 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 9/61 (14%) Query: 19 PALSRSQTSRGPAQPSKGGPGVLGSKSSLG----RGPTGT-----LVGLPCSRSRQTLPG 69 PA S R + +KG PG +G+ G GP G L GLP S +Q PG Sbjct: 1322 PAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPG 1381 Query: 70 A 70 A Sbjct: 1382 A 1382 >gi|27544941 myosin IF [Homo sapiens] Length = 1098 Score = 30.0 bits (66), Expect = 0.47 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 7/76 (9%) Query: 5 GVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLG-----RGPTGTLVGLP 59 G P S +P APA R G ++GGP L S G RGP T +G Sbjct: 933 GKPRRSSQAPTRAAPAPPRGMDRNGVPPSARGGPLPLEIMSGGGTHRPPRGPPSTSLG-- 990 Query: 60 CSRSRQTLPGAEWRCE 75 SR + P +E E Sbjct: 991 ASRRPRARPPSEHNTE 1006 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.315 0.132 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,231,684 Number of Sequences: 37866 Number of extensions: 323171 Number of successful extensions: 1765 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 181 Number of HSP's that attempted gapping in prelim test: 1481 Number of HSP's gapped (non-prelim): 456 length of query: 125 length of database: 18,247,518 effective HSP length: 90 effective length of query: 35 effective length of database: 14,839,578 effective search space: 519385230 effective search space used: 519385230 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.