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Search of human proteins with 239741451
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741451 PREDICTED: hypothetical protein [Homo sapiens]
(175 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741451 PREDICTED: hypothetical protein [Homo sapiens] 365 e-101
gi|239753034 PREDICTED: hypothetical protein [Homo sapiens] 277 4e-75
gi|239747584 PREDICTED: hypothetical protein [Homo sapiens] 277 4e-75
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 40 0.001
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 37 0.007
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 37 0.009
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 37 0.009
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 35 0.025
gi|20270245 GLI-Kruppel family member GLI4 [Homo sapiens] 35 0.033
gi|29029597 glutamate receptor KA2 precursor [Homo sapiens] 35 0.033
gi|19924099 synapsin I isoform Ia [Homo sapiens] 35 0.033
gi|19924097 synapsin I isoform Ib [Homo sapiens] 35 0.033
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 35 0.043
gi|5729785 complement component 1, q subcomponent-like 1 [Homo s... 35 0.043
gi|155029552 hypothetical protein LOC388115 [Homo sapiens] 35 0.043
gi|58331144 proline rich region 18 [Homo sapiens] 34 0.057
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 34 0.074
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 34 0.074
gi|150417999 ubiquitin-conjugating enzyme E2Z [Homo sapiens] 34 0.074
gi|194272183 G protein-coupled receptor 124 [Homo sapiens] 34 0.074
gi|7706501 WW domain binding protein 11 [Homo sapiens] 34 0.074
gi|239754301 PREDICTED: hypothetical protein XP_002345934 [Homo ... 33 0.13
gi|169167740 PREDICTED: hypothetical protein [Homo sapiens] 33 0.13
gi|239748840 PREDICTED: hypothetical protein XP_002346835 [Homo ... 33 0.13
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 33 0.13
gi|239742867 PREDICTED: hypothetical protein XP_002342667 [Homo ... 33 0.13
gi|4885433 mitogen-activated protein kinase 8 interacting protei... 33 0.13
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 33 0.13
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 33 0.13
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 33 0.13
>gi|239741451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 365 bits (937), Expect = e-101
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MPPPAHQSSWERKWSPGHLQRLFPAWYESFGTYLAEGHVQLDQAAAFWVTGEFTVWSAAQ 60
MPPPAHQSSWERKWSPGHLQRLFPAWYESFGTYLAEGHVQLDQAAAFWVTGEFTVWSAAQ
Sbjct: 1 MPPPAHQSSWERKWSPGHLQRLFPAWYESFGTYLAEGHVQLDQAAAFWVTGEFTVWSAAQ 60
Query: 61 RLPQHLSSAQVTPAGAARQHQLGEAVPLASLRRDSGILRLLEDAPHVAGSGRSRPPPQSL 120
RLPQHLSSAQVTPAGAARQHQLGEAVPLASLRRDSGILRLLEDAPHVAGSGRSRPPPQSL
Sbjct: 61 RLPQHLSSAQVTPAGAARQHQLGEAVPLASLRRDSGILRLLEDAPHVAGSGRSRPPPQSL 120
Query: 121 LQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPGRSGEGRRDTEARGPVGGRRR 175
LQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPGRSGEGRRDTEARGPVGGRRR
Sbjct: 121 LQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPGRSGEGRRDTEARGPVGGRRR 175
>gi|239753034 PREDICTED: hypothetical protein [Homo sapiens]
Length = 429
Score = 277 bits (708), Expect = 4e-75
Identities = 136/137 (99%), Positives = 137/137 (100%)
Query: 39 VQLDQAAAFWVTGEFTVWSAAQRLPQHLSSAQVTPAGAARQHQLGEAVPLASLRRDSGIL 98
+QLDQAAAFWVTGEFTVWSAAQRLPQHLSSAQVTPAGAARQHQLGEAVPLASLRRDSGIL
Sbjct: 293 LQLDQAAAFWVTGEFTVWSAAQRLPQHLSSAQVTPAGAARQHQLGEAVPLASLRRDSGIL 352
Query: 99 RLLEDAPHVAGSGRSRPPPQSLLQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPGRSG 158
RLLEDAPHVAGSGRSRPPPQSLLQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPGRSG
Sbjct: 353 RLLEDAPHVAGSGRSRPPPQSLLQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPGRSG 412
Query: 159 EGRRDTEARGPVGGRRR 175
EGRRDTEARGPVGGRRR
Sbjct: 413 EGRRDTEARGPVGGRRR 429
>gi|239747584 PREDICTED: hypothetical protein [Homo sapiens]
Length = 429
Score = 277 bits (708), Expect = 4e-75
Identities = 136/137 (99%), Positives = 137/137 (100%)
Query: 39 VQLDQAAAFWVTGEFTVWSAAQRLPQHLSSAQVTPAGAARQHQLGEAVPLASLRRDSGIL 98
+QLDQAAAFWVTGEFTVWSAAQRLPQHLSSAQVTPAGAARQHQLGEAVPLASLRRDSGIL
Sbjct: 293 LQLDQAAAFWVTGEFTVWSAAQRLPQHLSSAQVTPAGAARQHQLGEAVPLASLRRDSGIL 352
Query: 99 RLLEDAPHVAGSGRSRPPPQSLLQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPGRSG 158
RLLEDAPHVAGSGRSRPPPQSLLQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPGRSG
Sbjct: 353 RLLEDAPHVAGSGRSRPPPQSLLQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPGRSG 412
Query: 159 EGRRDTEARGPVGGRRR 175
EGRRDTEARGPVGGRRR
Sbjct: 413 EGRRDTEARGPVGGRRR 429
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 39.7 bits (91), Expect = 0.001
Identities = 41/128 (32%), Positives = 51/128 (39%), Gaps = 21/128 (16%)
Query: 56 WSAAQRLPQHLSSAQVTPAGAARQHQLG----EAVPLASLRRDSGILRLLEDAPHVAGSG 111
WS + R LS++ P G A++ Q G A P + +G D AG
Sbjct: 93 WSPSPRFAARLSTSSPFPQGRAQRPQRGGVDLPATPGGPRGQCAG---RSGDVLRRAGRR 149
Query: 112 RSRPPPQSLLQT--RPERASGSGGPGRGLQVPPGSPPGAAPLARPGRSGEGRR---DTEA 166
R+RPPP L P R RG P SPP P GR+ GRR +
Sbjct: 150 RARPPPVPRLPAPRAPRRP-------RGPATPDPSPPAGRPHGPAGRAAPGRRPGCTAQL 202
Query: 167 RGPVGGRR 174
R P GRR
Sbjct: 203 RAP--GRR 208
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 37.4 bits (85), Expect = 0.007
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 67 SSAQVTPAGAARQHQLGEAVPLASLRRDSGILRLLEDAPHVAGSGRSRPPPQSLLQTRPE 126
+S +TP+ A+ L A P L R S L ++ + SR PP++ + P
Sbjct: 293 ASLSMTPSTASLMRMLPRASPTGMLSRTS--LTKMDSTASI-----SRTPPRASITRTPS 345
Query: 127 RASGSGGPGRGLQVPPGSPPGAAPLARP 154
RAS +G P P G+P A+P P
Sbjct: 346 RASPTGKPSTA--SPTGTPSRASPTGSP 371
Score = 33.9 bits (76), Expect = 0.074
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 113 SRPPPQSLLQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPGRS 157
+R PP++ P RAS +G P R P G+PP A+P P R+
Sbjct: 619 TRTPPRASPTETPPRASPTGTPPRA--SPTGTPPRASPTGTPPRA 661
Score = 32.3 bits (72), Expect = 0.22
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 116 PPQSLLQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPGRS 157
PP++ P RAS +G P R P G+PP A+P P R+
Sbjct: 631 PPRASPTGTPPRASPTGTPPRAS--PTGTPPRASPTGTPSRA 670
Score = 30.0 bits (66), Expect = 1.1
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 70 QVTPAGAARQHQLGEAVPLASLRRDSGILRLLEDAPHVAGSGRSRPPPQSLLQTRPERAS 129
+ +P G L P AS +G+L + + +R PP++ P RAS
Sbjct: 391 RASPTGTPSTASLTRKPPRAS---PTGMLSRTSITKMDSTASPTRTPPRASPTGTPPRAS 447
Query: 130 GSGGPGR----GLQ---VPPGSPPGAAPLARP 154
+G P R G Q P GSP A+P P
Sbjct: 448 PTGTPSRASPTGTQSTASPTGSPSTASPTGSP 479
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 37.0 bits (84), Expect = 0.009
Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 14/115 (12%)
Query: 62 LPQHLSSAQVTPA-GAARQHQLGEAVPLASLRRDSGILRLLEDAPHVAGSGRSRPPPQSL 120
LPQ++ Q P G + G+ +PLASLR + G P R P P L
Sbjct: 86 LPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQG--------PRGEPGPRGPPGPPGL 137
Query: 121 ----LQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPGRSGEGRRDTEARGPVG 171
+ + G PG G PG P + PG GE + E GP+G
Sbjct: 138 PGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEI-GPMG 191
Score = 28.5 bits (62), Expect = 3.1
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 125 PERASGSGGPG-RGLQVPPGSPPGAAPLARPGRSG 158
P G G PG GL PPG P P +PG G
Sbjct: 526 PPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPG 560
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 37.0 bits (84), Expect = 0.009
Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 14/115 (12%)
Query: 62 LPQHLSSAQVTPA-GAARQHQLGEAVPLASLRRDSGILRLLEDAPHVAGSGRSRPPPQSL 120
LPQ++ Q P G + G+ +PLASLR + G P R P P L
Sbjct: 86 LPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQG--------PRGEPGPRGPPGPPGL 137
Query: 121 ----LQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPGRSGEGRRDTEARGPVG 171
+ + G PG G PG P + PG GE + E GP+G
Sbjct: 138 PGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEI-GPMG 191
Score = 28.5 bits (62), Expect = 3.1
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 125 PERASGSGGPG-RGLQVPPGSPPGAAPLARPGRSG 158
P G G PG GL PPG P P +PG G
Sbjct: 526 PPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPG 560
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 35.4 bits (80), Expect = 0.025
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 104 APHVAGSGRSRPPPQSLLQTRPERASGSGGPGRGLQVPPGSPPG--AAPLARPGRSGEGR 161
A ++ ++RP S RP S GPG L P SP G A+P R R E +
Sbjct: 456 ASELSPKSKARPSSPSTSWHRPASPCPSPGPGHTLPPKPPSPRGTTASPKGRVRRKEEAK 515
Query: 162 RDTEARGP 169
A GP
Sbjct: 516 ESPSAAGP 523
>gi|20270245 GLI-Kruppel family member GLI4 [Homo sapiens]
Length = 376
Score = 35.0 bits (79), Expect = 0.033
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 118 QSLLQTRPERA--SGSGGPGRGLQVPPGSPPGAAPLARP 154
+SLL++ P RA S GP + P G PPGA P A+P
Sbjct: 101 RSLLRSLPRRARCSAGFGPESSAERPAGQPPGAVPCAQP 139
>gi|29029597 glutamate receptor KA2 precursor [Homo sapiens]
Length = 980
Score = 35.0 bits (79), Expect = 0.033
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 96 GILRLLEDAPHVAGSGRSRPPP-------QSLLQTRPERASGSGGPGRGLQVPPGSPPGA 148
G RLL+D +G+ + P P Q + + RASG+G P RGL VP + +
Sbjct: 905 GPQRLLDDPGPPSGARPAAPTPCTHVRVCQECRRIQALRASGAGAPPRGLGVP--AEATS 962
Query: 149 APLARPGRSG 158
P RPG +G
Sbjct: 963 PPRPRPGPAG 972
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 35.0 bits (79), Expect = 0.033
Identities = 36/113 (31%), Positives = 45/113 (39%), Gaps = 16/113 (14%)
Query: 58 AAQRLPQHLSSAQVTPAGAARQHQLGEAVPLASLRRDSGILRLLEDAPHVA------GSG 111
A LPQ L S P A +Q A P R S + AP A
Sbjct: 500 AGSPLPQRLPS----PTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQ 555
Query: 112 RSRPPPQSLLQTR-----PERASGSGGPGRGLQVPPGSPPG-AAPLARPGRSG 158
R PPQ+ QT P +ASG+ G+ Q PP PPG A P + ++G
Sbjct: 556 RQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAG 608
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 35.0 bits (79), Expect = 0.033
Identities = 36/113 (31%), Positives = 45/113 (39%), Gaps = 16/113 (14%)
Query: 58 AAQRLPQHLSSAQVTPAGAARQHQLGEAVPLASLRRDSGILRLLEDAPHVA------GSG 111
A LPQ L S P A +Q A P R S + AP A
Sbjct: 500 AGSPLPQRLPS----PTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQ 555
Query: 112 RSRPPPQSLLQTR-----PERASGSGGPGRGLQVPPGSPPG-AAPLARPGRSG 158
R PPQ+ QT P +ASG+ G+ Q PP PPG A P + ++G
Sbjct: 556 RQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAG 608
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 34.7 bits (78), Expect = 0.043
Identities = 40/114 (35%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 64 QHLSSAQVTPAGAARQHQLGEAVPLASLRRDSGILR--LLEDAPHVAGSGRSRPPPQSLL 121
Q L A + P G+A + Q E A R L P + R RPPP
Sbjct: 62 QTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPG--- 118
Query: 122 QTRPERASGSGGPG-RGLQVPPGSPPGAAPLARPGRSGEGRRDTEARGPVGGRR 174
T P R + PG RGL P PP AP AR G +G+ D GP GRR
Sbjct: 119 -TPPPRCPRTLAPGPRGLF--PAPPP--AP-ARTGPAGKAAADRGRPGPAAGRR 166
>gi|5729785 complement component 1, q subcomponent-like 1 [Homo
sapiens]
Length = 258
Score = 34.7 bits (78), Expect = 0.043
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 115 PPPQSLLQT---RPERASGSGGPGRGLQVPPGSPPGAAPLARPGRSGE 159
PPP +L+Q +P R G PG PPG P P+ PG GE
Sbjct: 59 PPPSTLVQGPQGKPGRTGKPGPPG-----PPGDPGPPGPVGPPGEKGE 101
>gi|155029552 hypothetical protein LOC388115 [Homo sapiens]
Length = 534
Score = 34.7 bits (78), Expect = 0.043
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 125 PERASGSGGPGRGLQVPPGSPPGAAPLARPGRSGEGRRDTEARGPVGGRRR 175
P+R +G PG G+ G AP +RP R G R +RG G RRR
Sbjct: 478 PQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQR----SRGTAGVRRR 524
>gi|58331144 proline rich region 18 [Homo sapiens]
Length = 295
Score = 34.3 bits (77), Expect = 0.057
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 99 RLLEDAPHVAGSGRSRPP--PQSLLQTR-----PERASGSGGPGRGLQVPPGSPPGAAPL 151
R L P AG + RPP P+ LL + +R GPG PP +PPG +P
Sbjct: 20 RQLPRRPCAAGDKKKRPPQRPEGLLSSSWPSATLKRPPARRGPGLDRTQPP-APPGVSPQ 78
Query: 152 ARPGRS 157
A P R+
Sbjct: 79 ALPSRA 84
Score = 29.3 bits (64), Expect = 1.8
Identities = 21/47 (44%), Positives = 22/47 (46%), Gaps = 13/47 (27%)
Query: 103 DAPHVAGSGRSRPPPQSLLQTRPERASGSGGPGRGLQVPPGSP-PGA 148
DAP AG GR PPP + L GLQVP SP PGA
Sbjct: 196 DAPPTAGQGRRAPPPGAQLL------------HGGLQVPQLSPRPGA 230
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 33.9 bits (76), Expect = 0.074
Identities = 31/78 (39%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 104 APHVAGSGR---SRPPPQSLLQTRPERASG-SGGPG----RGLQVPPGSPPGAAPLARPG 155
AP +AG+ R PP T P G +G PG +G Q P G P A P PG
Sbjct: 424 APGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPG 483
Query: 156 RSG-EGRRDTEARGPVGG 172
+G EG+R ARG GG
Sbjct: 484 PAGEEGKRG--ARGEPGG 499
Score = 29.3 bits (64), Expect = 1.8
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 129 SGSGGPGRGLQVPPGSPPGAAPLARPGRSGEGRRDTEARGPVG 171
SG GP RG PPG P +PG++GE RGP G
Sbjct: 236 SGPMGP-RGPPGPPGKPGDDGEAGKPGKAGE-------RGPPG 270
Score = 28.9 bits (63), Expect = 2.4
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 9/40 (22%)
Query: 132 GGPGRGLQVPPGSPPGAAPLARPGRSGEGRRDTEARGPVG 171
G PG PPGSP A P + G GE A+GP+G
Sbjct: 1068 GAPG-----PPGSPGPAGPTGKQGDRGE----AGAQGPMG 1098
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 33.9 bits (76), Expect = 0.074
Identities = 31/78 (39%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 104 APHVAGSGR---SRPPPQSLLQTRPERASG-SGGPG----RGLQVPPGSPPGAAPLARPG 155
AP +AG+ R PP T P G +G PG +G Q P G P A P PG
Sbjct: 355 APGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPG 414
Query: 156 RSG-EGRRDTEARGPVGG 172
+G EG+R ARG GG
Sbjct: 415 PAGEEGKRG--ARGEPGG 430
Score = 29.3 bits (64), Expect = 1.8
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 129 SGSGGPGRGLQVPPGSPPGAAPLARPGRSGEGRRDTEARGPVG 171
SG GP RG PPG P +PG++GE RGP G
Sbjct: 167 SGPMGP-RGPPGPPGKPGDDGEAGKPGKAGE-------RGPPG 201
Score = 28.9 bits (63), Expect = 2.4
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 9/40 (22%)
Query: 132 GGPGRGLQVPPGSPPGAAPLARPGRSGEGRRDTEARGPVG 171
G PG PPGSP A P + G GE A+GP+G
Sbjct: 999 GAPG-----PPGSPGPAGPTGKQGDRGE----AGAQGPMG 1029
>gi|150417999 ubiquitin-conjugating enzyme E2Z [Homo sapiens]
Length = 354
Score = 33.9 bits (76), Expect = 0.074
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 107 VAGSGRSRPPP-QSLLQTRPERASGSGGPGRGLQVPPGSPPGAA 149
V+GSG PP + A G+GGPG GL PG PP AA
Sbjct: 30 VSGSGGGFGPPFLPDVWAAAAAAGGAGGPGSGLAPLPGLPPSAA 73
>gi|194272183 G protein-coupled receptor 124 [Homo sapiens]
Length = 1338
Score = 33.9 bits (76), Expect = 0.074
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Query: 59 AQRLPQHLSSAQVTPAGAARQHQLGEAVPLASLRR-DSGILRLLEDAPHVAGSGRSRPPP 117
A R P ++ + A+ H+ GEA L+ G LE +GS + P
Sbjct: 1169 AHRHPNNVHHGRRAHKSRAKGHRAGEACGKNRLKALRGGAAGALELLSSESGSLHNSPTD 1228
Query: 118 QSLLQTRPERASGSGGPGRGLQVPP-GSPPGAAPLARPGRSGEGR 161
L +R +G G + P GS AAPL+ GR+G+ R
Sbjct: 1229 SYLGSSRNSPGAGLQLEGEPMLTPSEGSDTSAAPLSEAGRAGQRR 1273
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 33.9 bits (76), Expect = 0.074
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 21/96 (21%)
Query: 59 AQRLPQHLSSAQVTPAGAARQHQLGEAVPLASLRRDSGILRLLEDAPHVAGSGRSRPPPQ 118
+Q+ + S + T +++Q ++VP + ++ AP + G PPP
Sbjct: 370 SQKQHKEESHSDGTSTASSQQQAPPQSVPPSQIQ-----------APPMPGPPPLGPPPA 418
Query: 119 SLLQTRPERASGSGGPGRGLQVPPGSPPGAAPLARP 154
L RP GP GL PPG PPGA P RP
Sbjct: 419 PPL--RPP------GPPTGL--PPGPPPGAPPFLRP 444
Score = 28.1 bits (61), Expect = 4.1
Identities = 34/111 (30%), Positives = 38/111 (34%), Gaps = 7/111 (6%)
Query: 51 GEFTVWSAAQRLPQHLSSAQVTPAGAARQHQLGEAVPLASLRRDSGILRLLEDAPHVAGS 110
G T S Q PQ + +Q+ LG P A R G L P
Sbjct: 382 GTSTASSQQQAPPQSVPPSQIQAPPMPGPPPLGP--PPAPPLRPPGPPTGLPPGPPPGAP 439
Query: 111 GRSRPPPQSLLQTRPERASGSGGP-GRGLQVPPGSPPGAAPLARPGRSGEG 160
RPP L+ R G P GR PPG PPG P PG G
Sbjct: 440 PFLRPPGMPGLRGPLPRLLPPGPPPGR----PPGPPPGPPPGLPPGPPPRG 486
>gi|239754301 PREDICTED: hypothetical protein XP_002345934 [Homo
sapiens]
Length = 221
Score = 33.1 bits (74), Expect = 0.13
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 111 GRSRPPPQSLLQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPG 155
G + PP L+ R G GGP +G + P +P G+AP PG
Sbjct: 90 GSTESPPARTLR----RGEGRGGPAQGARGPTPTPRGSAPPRPPG 130
>gi|169167740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 33.1 bits (74), Expect = 0.13
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 112 RSRPPPQSLLQTRPERASGSGGPGRGLQVPPGSP-PGAAPLARP---GRSGEGRR 162
RSR PP+ PER+ G G + P P PG P+ RP GRSG G R
Sbjct: 164 RSRGPPRQARSQHPERSPEPEGRGNHARKPAALPVPGRFPI-RPVLGGRSGPGDR 217
>gi|239748840 PREDICTED: hypothetical protein XP_002346835 [Homo
sapiens]
Length = 221
Score = 33.1 bits (74), Expect = 0.13
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 111 GRSRPPPQSLLQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPG 155
G + PP L+ R G GGP +G + P +P G+AP PG
Sbjct: 90 GSTESPPARTLR----RGEGRGGPAQGARGPTPTPRGSAPPRPPG 130
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 33.1 bits (74), Expect = 0.13
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 117 PQSLLQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPGRSGEGRRDTEARGPVG 171
P+S + P R S GRG + PP P++ PGR+ T GP+G
Sbjct: 71 PESAPRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRAS----GTTRPGPLG 121
Score = 30.4 bits (67), Expect = 0.82
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 13/73 (17%)
Query: 105 PHVAGSGRSRPP---PQSLLQTRPERASGSGGP--------GRGLQVPPGSP--PGAAPL 151
P A S R RPP P+ + + E ++ P G GLQ P A PL
Sbjct: 181 PRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPL 240
Query: 152 ARPGRSGEGRRDT 164
+ P RSG R T
Sbjct: 241 SSPARSGPSARGT 253
Score = 27.3 bits (59), Expect = 6.9
Identities = 35/111 (31%), Positives = 40/111 (36%), Gaps = 6/111 (5%)
Query: 63 PQHLSSAQVTPAGAARQHQLGEAVPLASLRRDSGILRLLEDAPHV----AGSGRSRPPPQ 118
P Q P AA QL + P A + L+ L P A S P
Sbjct: 454 PSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPM 513
Query: 119 SLLQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPGRSGEGRRDTEARGP 169
S L T P +A LQVPP SPP + L P R DT GP
Sbjct: 514 SPLATPPPQAPPVLAAPL-LQVPP-SPPASPTLQAPRRPPTPGPDTSVSGP 562
>gi|239742867 PREDICTED: hypothetical protein XP_002342667 [Homo
sapiens]
Length = 221
Score = 33.1 bits (74), Expect = 0.13
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 111 GRSRPPPQSLLQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPG 155
G + PP L+ R G GGP +G + P +P G+AP PG
Sbjct: 90 GSTESPPARTLR----RGEGRGGPAQGARGPTPTPRGSAPPRPPG 130
>gi|4885433 mitogen-activated protein kinase 8 interacting protein 1
[Homo sapiens]
Length = 711
Score = 33.1 bits (74), Expect = 0.13
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 116 PPQSLLQTRPERASGSGGPGRGLQVPPGSPPGAAPLARPGRSGEGRRD 163
PPQS +R + + P R +PPG P A PG G RD
Sbjct: 218 PPQSGPAPTTDRGTSTDSPCRRSTATQMAPPGGPPAAPPGGRGHSHRD 265
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 33.1 bits (74), Expect = 0.13
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 104 APHVAGSGRSRPPPQSLLQTRPERASGSGGPGR----GLQVPPGSPPGAAPLARPGRSG 158
+P + G+ PP S P +A SG PG G+ PPG PPG PL PGRSG
Sbjct: 864 SPGIPGAPGPIGPPGS--PGLPGKAGASGFPGTKGEMGMMGPPG-PPG--PLGIPGRSG 917
Score = 32.0 bits (71), Expect = 0.28
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 105 PHVAGSGRSRPPPQSLLQTRPERASGSGGPGR-GLQVPPGSPPGAAPLARPG 155
P + G G PP P G PGR GL+ PPG P P PG
Sbjct: 701 PGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPG 752
Score = 30.4 bits (67), Expect = 0.82
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 132 GGPGRGLQVPPGSPPGAAPLARPGRSG-------EGRRDTEARGPVGGR 173
G PG G+Q PPG P P+ +PG G G + GP G R
Sbjct: 814 GLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGER 862
Score = 28.5 bits (62), Expect = 3.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 132 GGPGRGLQVPPGSPPGAAPLARPGRSG 158
G PG L+ P G+P P RPG +G
Sbjct: 1241 GSPGPALEGPKGNPGPQGPPGRPGPTG 1267
Score = 28.1 bits (61), Expect = 4.1
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 137 GLQVPPG--SPPGAAPLARPGRSG-EGRRDTEA-RGPVG 171
G+Q PPG PPGAA + PG G G R + GP G
Sbjct: 377 GIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPG 415
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 33.1 bits (74), Expect = 0.13
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 104 APHVAGSGRSRPPPQSLLQTRPERASGSGGPGR----GLQVPPGSPPGAAPLARPGRSG 158
+P + G+ PP S P +A SG PG G+ PPG PPG PL PGRSG
Sbjct: 864 SPGIPGAPGPIGPPGS--PGLPGKAGASGFPGTKGEMGMMGPPG-PPG--PLGIPGRSG 917
Score = 32.0 bits (71), Expect = 0.28
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 105 PHVAGSGRSRPPPQSLLQTRPERASGSGGPGR-GLQVPPGSPPGAAPLARPG 155
P + G G PP P G PGR GL+ PPG P P PG
Sbjct: 701 PGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPG 752
Score = 30.4 bits (67), Expect = 0.82
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 132 GGPGRGLQVPPGSPPGAAPLARPGRSG-------EGRRDTEARGPVGGR 173
G PG G+Q PPG P P+ +PG G G + GP G R
Sbjct: 814 GLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGER 862
Score = 29.6 bits (65), Expect = 1.4
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 132 GGPGRGLQVPPGSPPGAAPLARPGRSG-EGRRDTEARGPVGGRR 174
G PG L+ P G+P P RPG G EG G + G +
Sbjct: 1241 GSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEK 1284
Score = 28.1 bits (61), Expect = 4.1
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 137 GLQVPPG--SPPGAAPLARPGRSG-EGRRDTEA-RGPVG 171
G+Q PPG PPGAA + PG G G R + GP G
Sbjct: 377 GIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPG 415
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 33.1 bits (74), Expect = 0.13
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 104 APHVAGSGRSRPPPQSLLQTRPERASGSGGPGR----GLQVPPGSPPGAAPLARPGRSG 158
+P + G+ PP S P +A SG PG G+ PPG PPG PL PGRSG
Sbjct: 864 SPGIPGAPGPIGPPGS--PGLPGKAGASGFPGTKGEMGMMGPPG-PPG--PLGIPGRSG 917
Score = 32.0 bits (71), Expect = 0.28
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 105 PHVAGSGRSRPPPQSLLQTRPERASGSGGPGR-GLQVPPGSPPGAAPLARPG 155
P + G G PP P G PGR GL+ PPG P P PG
Sbjct: 701 PGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPG 752
Score = 30.4 bits (67), Expect = 0.82
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 132 GGPGRGLQVPPGSPPGAAPLARPGRSG-------EGRRDTEARGPVGGR 173
G PG G+Q PPG P P+ +PG G G + GP G R
Sbjct: 814 GLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGER 862
Score = 28.5 bits (62), Expect = 3.1
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 132 GGPGRGLQVPPGSPPGAAPLARPGRSG----EGRRDTEARGPVGGRR 174
G PG L+ P G+P P RPG G EG G + G +
Sbjct: 1241 GSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEK 1287
Score = 28.1 bits (61), Expect = 4.1
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 137 GLQVPPG--SPPGAAPLARPGRSG-EGRRDTEA-RGPVG 171
G+Q PPG PPGAA + PG G G R + GP G
Sbjct: 377 GIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPG 415
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,892,951
Number of Sequences: 37866
Number of extensions: 592783
Number of successful extensions: 5698
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 618
Number of HSP's that attempted gapping in prelim test: 4412
Number of HSP's gapped (non-prelim): 1825
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.