Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239741182
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo
sapiens]
(211 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo ... 431 e-121
gi|239747357 PREDICTED: hypothetical protein XP_002346431 [Homo ... 285 3e-77
gi|9966841 cell death regulator aven [Homo sapiens] 53 2e-07
gi|239748639 PREDICTED: hypothetical protein XP_002346752 [Homo ... 51 6e-07
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ... 49 2e-06
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 45 4e-05
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 45 4e-05
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 43 2e-04
gi|84570137 homeobox B3 [Homo sapiens] 43 2e-04
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 43 2e-04
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo... 43 2e-04
gi|13994190 frizzled 8 [Homo sapiens] 42 3e-04
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 42 3e-04
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 42 3e-04
gi|47132620 keratin 2 [Homo sapiens] 42 3e-04
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 42 4e-04
gi|116325989 hyperpolarization activated cyclic nucleotide-gated... 42 5e-04
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 42 5e-04
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 42 5e-04
gi|12056465 fibrillarin [Homo sapiens] 42 5e-04
gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2... 42 5e-04
gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1... 42 5e-04
gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [H... 42 5e-04
gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [H... 42 5e-04
gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Ho... 42 5e-04
gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo ... 42 5e-04
gi|21322252 androgen receptor isoform 1 [Homo sapiens] 41 6e-04
gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapi... 41 6e-04
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 41 6e-04
gi|44917619 kelch domain containing 10 [Homo sapiens] 41 6e-04
>gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo
sapiens]
Length = 211
Score = 431 bits (1109), Expect = e-121
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MQIAGRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPA 60
MQIAGRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPA
Sbjct: 1 MQIAGRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPA 60
Query: 61 RRRGPGATTRPGRWSLGSVFRKGEGTWRRRRLLAAADPRASPCLPVRGILSLTLLPARQL 120
RRRGPGATTRPGRWSLGSVFRKGEGTWRRRRLLAAADPRASPCLPVRGILSLTLLPARQL
Sbjct: 61 RRRGPGATTRPGRWSLGSVFRKGEGTWRRRRLLAAADPRASPCLPVRGILSLTLLPARQL 120
Query: 121 PPSWRKTTPVLIPALKERNGSEVISDFSLGKAERNPSSYSCSHEKKFNRKHIKCPFPKTL 180
PPSWRKTTPVLIPALKERNGSEVISDFSLGKAERNPSSYSCSHEKKFNRKHIKCPFPKTL
Sbjct: 121 PPSWRKTTPVLIPALKERNGSEVISDFSLGKAERNPSSYSCSHEKKFNRKHIKCPFPKTL 180
Query: 181 NQSGKKQRDDATEVSGKLRLIKGSLLDLQAL 211
NQSGKKQRDDATEVSGKLRLIKGSLLDLQAL
Sbjct: 181 NQSGKKQRDDATEVSGKLRLIKGSLLDLQAL 211
>gi|239747357 PREDICTED: hypothetical protein XP_002346431 [Homo
sapiens]
Length = 205
Score = 285 bits (728), Expect = 3e-77
Identities = 152/185 (82%), Positives = 154/185 (83%), Gaps = 11/185 (5%)
Query: 37 GGREKRGRPESPRRRRSGE-RASPARRR---------GPGATTRPGRWSLGSVFRKGEGT 86
G K G P + RR GE RA+P R G G T GR GSVFRKGEGT
Sbjct: 22 GEERKTGVPAAAAVRREGEPRAAPGTGRYHEAGTLESGVGGRTGTGREE-GSVFRKGEGT 80
Query: 87 WRRRRLLAAADPRASPCLPVRGILSLTLLPARQLPPSWRKTTPVLIPALKERNGSEVISD 146
WRRRRLLAAADPRASPCLPVRGILSLTLLPARQLPPSWRKTTPVLIPALKERNGSEVISD
Sbjct: 81 WRRRRLLAAADPRASPCLPVRGILSLTLLPARQLPPSWRKTTPVLIPALKERNGSEVISD 140
Query: 147 FSLGKAERNPSSYSCSHEKKFNRKHIKCPFPKTLNQSGKKQRDDATEVSGKLRLIKGSLL 206
FSLGKAERNPSSYSCSHEKKFNRKHIKCPFPKTLNQSGKKQRDDATEVSGKLRLIKGSLL
Sbjct: 141 FSLGKAERNPSSYSCSHEKKFNRKHIKCPFPKTLNQSGKKQRDDATEVSGKLRLIKGSLL 200
Query: 207 DLQAL 211
DLQAL
Sbjct: 201 DLQAL 205
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 53.1 bits (126), Expect = 2e-07
Identities = 32/80 (40%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 5 GRTKEGEPGTPGG------AGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERAS 58
GR + G PGG G+ RGGGGG GG GGGR RGR R R G
Sbjct: 10 GRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGRGGG 69
Query: 59 PARRRGPGATTRPGRWSLGS 78
A R G+ PG W G+
Sbjct: 70 GAPR---GSRREPGGWGAGA 86
>gi|239748639 PREDICTED: hypothetical protein XP_002346752 [Homo
sapiens]
Length = 286
Score = 51.2 bits (121), Expect = 6e-07
Identities = 31/57 (54%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 12 PGTPGGAGS----GGRSLRGGGGGAGGGGGGR-EKRGRPESPRRRRSGERASPARRR 63
PG GGA + GGRS GGGGG GGGGGGR +RGR R G RA RRR
Sbjct: 157 PGAGGGAEAQFLGGGRSSAGGGGGGGGGGGGRGSRRGRGGG---ERGGPRAQAVRRR 210
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/106 (33%), Positives = 40/106 (37%), Gaps = 3/106 (2%)
Query: 4 AGRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASP---A 60
A T G G G+ + L GG AGGGGGG G S R R GER P A
Sbjct: 147 AAATTTALDGPGAGGGAEAQFLGGGRSSAGGGGGGGGGGGGRGSRRGRGGGERGGPRAQA 206
Query: 61 RRRGPGATTRPGRWSLGSVFRKGEGTWRRRRLLAAADPRASPCLPV 106
RR A GR R+ + T L A LPV
Sbjct: 207 VRRRLSALRGRGRRRRLKRLRRAQETRGAAALERACASVREELLPV 252
>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
sapiens]
Length = 284
Score = 49.3 bits (116), Expect = 2e-06
Identities = 29/55 (52%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 12 PGTPGGA---GSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRR 63
PG GGA GSG S GGGGG GGGGG +RGR R G RA RRR
Sbjct: 157 PGAGGGAERGGSGRSSAGGGGGGGGGGGGRGSRRGRGGG---ERGGPRAQAVRRR 208
Score = 39.3 bits (90), Expect = 0.002
Identities = 35/95 (36%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 17 GAGSGGRSLRGGGGGA--GGGGGGREKRGRPESPRRRRSGERASP---ARRRGPGATTRP 71
G G+GG + RGG G + GGGGGG G S R R GER P A RR A
Sbjct: 156 GPGAGGGAERGGSGRSSAGGGGGGGGGGGGRGSRRGRGGGERGGPRAQAVRRRLSALRGR 215
Query: 72 GRWSLGSVFRKGEGTWRRRRLLAAADPRASPCLPV 106
GR R+ + T L A LPV
Sbjct: 216 GRRRRLKRLRRAQETSGAAALERACASVREELLPV 250
Score = 38.9 bits (89), Expect = 0.003
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 5 GRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRG-RPESPRRRRSGERASPARRR 63
G + G G G GG GGG G+ G GG E+ G R ++ RRR S R RRR
Sbjct: 161 GGAERGGSGRSSAGGGGGGGGGGGGRGSRRGRGGGERGGPRAQAVRRRLSALRGRGRRRR 220
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 45.1 bits (105), Expect = 4e-05
Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 8 KEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASP---ARRRG 64
K+G+ G GG G GG S GG GG GGGG RP +P+ + E P AR R
Sbjct: 223 KKGDGGGAGGGGGGGGSGGGGSGGGGGGGS-----SRPPAPQENTTSEAGLPQGEARTRD 277
Query: 65 PG 66
G
Sbjct: 278 DG 279
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 45.1 bits (105), Expect = 4e-05
Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 8 KEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASP---ARRRG 64
K+G+ G GG G GG S GG GG GGGG RP +P+ + E P AR R
Sbjct: 207 KKGDGGGAGGGGGGGGSGGGGSGGGGGGGS-----SRPPAPQENTTSEAGLPQGEARTRD 261
Query: 65 PG 66
G
Sbjct: 262 DG 263
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 43.1 bits (100), Expect = 2e-04
Identities = 28/70 (40%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 12 PGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRRGPGATTRP 71
PG G AGS G S GG GGG GGR GR + R+ P R PG P
Sbjct: 1399 PGPGGKAGSSGSS----SGGGGGGPGGRTGPGRGDKRSWPSPKNRSRPPEERPPGLPLPP 1454
Query: 72 GRWSLGSVFR 81
S +VFR
Sbjct: 1455 PPPSSSAVFR 1464
Score = 34.7 bits (78), Expect = 0.061
Identities = 27/72 (37%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 10 GEPGTPGGAGSGGRSLR-----------GGGGGAGGGGGGREKRGRPESPRRRRSGE-RA 57
G GT GG G G RS G GGG GG RGR S R E
Sbjct: 1037 GFRGTYGGRGRGARSREFRSYREFRGDDGRGGGTGGPNHPPAPRGRTASETRSEGSEYEE 1096
Query: 58 SPARRRGPGATT 69
P RRR G+ T
Sbjct: 1097 IPKRRRQRGSET 1108
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 43.1 bits (100), Expect = 2e-04
Identities = 50/174 (28%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 6 RTKEGEPGTP------GGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASP 59
+ K PGT GG G GG S GGGG GGGGG + G S R R + A
Sbjct: 141 KLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQL 200
Query: 60 ARRRGP----GATTRPGRWSLGSVFRKGEGT----WRRRRLLAAADPRASPCLPVRGILS 111
RP R + ++ E ++ RR+ D +A +G+ S
Sbjct: 201 VELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKA------KGLAS 254
Query: 112 LTLLPA-RQLPPSWRKTTPVLIPALKERNGS-EVISDFSLGKAERN----PSSY 159
+ P+ PP ++T + AL S E S + GKA +N PS+Y
Sbjct: 255 SSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNY 308
>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform b [Homo sapiens]
Length = 373
Score = 42.7 bits (99), Expect = 2e-04
Identities = 18/26 (69%), Positives = 19/26 (73%)
Query: 13 GTPGGAGSGGRSLRGGGGGAGGGGGG 38
G GGAG GG + GGGGG GGGGGG
Sbjct: 211 GGAGGAGGGGPASAGGGGGGGGGGGG 236
Score = 36.2 bits (82), Expect = 0.021
Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 4 AGRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGG 37
AG G P + GG G GG GGGGGA G GG
Sbjct: 213 AGGAGGGGPASAGGGGGGGGG--GGGGGAAGAGG 244
Score = 34.3 bits (77), Expect = 0.079
Identities = 21/44 (47%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 4 AGRTKEGEPGTPGGAGS-----GGRSLRGGGG----GAGGGGGG 38
AG G PG AGS GG GGGG G GGGGGG
Sbjct: 189 AGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGG 232
>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform a [Homo sapiens]
Length = 403
Score = 42.7 bits (99), Expect = 2e-04
Identities = 18/26 (69%), Positives = 19/26 (73%)
Query: 13 GTPGGAGSGGRSLRGGGGGAGGGGGG 38
G GGAG GG + GGGGG GGGGGG
Sbjct: 211 GGAGGAGGGGPASAGGGGGGGGGGGG 236
Score = 36.2 bits (82), Expect = 0.021
Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 4 AGRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGG 37
AG G P + GG G GG GGGGGA G GG
Sbjct: 213 AGGAGGGGPASAGGGGGGGGG--GGGGGAAGAGG 244
Score = 34.3 bits (77), Expect = 0.079
Identities = 21/44 (47%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 4 AGRTKEGEPGTPGGAGS-----GGRSLRGGGG----GAGGGGGG 38
AG G PG AGS GG GGGG G GGGGGG
Sbjct: 189 AGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGG 232
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 42.4 bits (98), Expect = 3e-04
Identities = 21/34 (61%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 4 AGRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGG 37
AG T G G PGG G GG GGGGG GGGGG
Sbjct: 633 AGATAAGGGGGPGGGGGGGP---GGGGGPGGGGG 663
Score = 35.0 bits (79), Expect = 0.047
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 13 GTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRP 45
G G G+G + GGGG GGGGGG G P
Sbjct: 626 GAAVGGGAGATAAGGGGGPGGGGGGGPGGGGGP 658
Score = 34.3 bits (77), Expect = 0.079
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 10 GEPGTPGGAGSGGRSLRGGGGGAGGGG-GGR 39
G PG G G+GG + G GAG GG GGR
Sbjct: 343 GAPGAGGAGGAGGAAAGAGAAGAGAGGPGGR 373
Score = 31.2 bits (69), Expect = 0.67
Identities = 15/34 (44%), Positives = 15/34 (44%)
Query: 5 GRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGG 38
G G G G GG GGGG GGGG G
Sbjct: 626 GAAVGGGAGATAAGGGGGPGGGGGGGPGGGGGPG 659
Score = 29.3 bits (64), Expect = 2.6
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 3 IAGRTKEGEPGTPGGAGSGGRS--LRGGGGGAGGGGGGREKRGRPE 46
+AG K G GAG G + G G AG G GG RG E
Sbjct: 332 VAGHEKVACSGGAPGAGGAGGAGGAAAGAGAAGAGAGGPGGRGEYE 377
Score = 27.3 bits (59), Expect = 9.7
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 19/60 (31%)
Query: 15 PGGAGSG---GRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRRGPGATTRP 71
P G+G G G GGG GGGGG A PAR G G RP
Sbjct: 177 PSGSGHGRPPGARPPHRGGGRGGGGG----------------DAAAPPARGGGGGGKARP 220
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 42.4 bits (98), Expect = 3e-04
Identities = 26/55 (47%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 10 GEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRRG 64
GE G P G G GGR GGGG GGG GG + GR R G R R RG
Sbjct: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGG-RGGGFRGRG 216
Score = 37.4 bits (85), Expect = 0.009
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 16 GGAGSGGRSLRGGGGGAGGGGGGRE--KRGRPESPRRR 51
GG G GG + RGGG G G GGGR +G+ + P R
Sbjct: 32 GGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQGPPER 69
Score = 32.3 bits (72), Expect = 0.30
Identities = 18/40 (45%), Positives = 18/40 (45%)
Query: 5 GRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGR 44
GR G GG GG S GGG GGGGG GR
Sbjct: 7 GRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGR 46
Score = 29.3 bits (64), Expect = 2.6
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 12/39 (30%)
Query: 17 GAGSGGRSLRGGGGGA------------GGGGGGREKRG 43
G G GG + GGGGG GGGGGG RG
Sbjct: 5 GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRG 43
Score = 28.5 bits (62), Expect = 4.4
Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 24 SLRGGGGGA---GGGGGGREKRGRPESPRRRRSGERASPARRRGPGATTRPG 72
S RGGG G GGGGGG + G R G R G G R G
Sbjct: 2 SFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGG 53
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 42.4 bits (98), Expect = 3e-04
Identities = 26/55 (47%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 10 GEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRRG 64
GE G P G G GGR GGGG GGG GG + GR R G R R RG
Sbjct: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGG-RGGGFRGRG 216
Score = 37.4 bits (85), Expect = 0.009
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 16 GGAGSGGRSLRGGGGGAGGGGGGRE--KRGRPESPRRR 51
GG G GG + RGGG G G GGGR +G+ + P R
Sbjct: 32 GGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQGPPER 69
Score = 32.3 bits (72), Expect = 0.30
Identities = 18/40 (45%), Positives = 18/40 (45%)
Query: 5 GRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGR 44
GR G GG GG S GGG GGGGG GR
Sbjct: 7 GRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGR 46
Score = 29.3 bits (64), Expect = 2.6
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 12/39 (30%)
Query: 17 GAGSGGRSLRGGGGGA------------GGGGGGREKRG 43
G G GG + GGGGG GGGGGG RG
Sbjct: 5 GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRG 43
Score = 28.5 bits (62), Expect = 4.4
Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 24 SLRGGGGGA---GGGGGGREKRGRPESPRRRRSGERASPARRRGPGATTRPG 72
S RGGG G GGGGGG + G R G R G G R G
Sbjct: 2 SFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGG 53
>gi|47132620 keratin 2 [Homo sapiens]
Length = 639
Score = 42.4 bits (98), Expect = 3e-04
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 11 EPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRRGPGATTR 70
+ G+ GG+G GG S+ GGG G+GGG GGR G G S + G +R
Sbjct: 545 QSGSRGGSGGGG-SISGGGYGSGGGSGGRYGSGGGSKGGSISGGGYGSGGGKHSSGGGSR 603
Query: 71 PGRWSLGSVFRKGEGT 86
G S G G G+
Sbjct: 604 GGSSSGGGYGSGGGGS 619
Score = 32.3 bits (72), Expect = 0.30
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 4 AGRTKEGEPGTPGGAGSGGRSLRGGGGGAGG--GGGGREKRGRPESPRRRRSGE 55
+G +G + GG GSGG GGG GG GGG G S + SGE
Sbjct: 575 SGGGSKGGSISGGGYGSGGGKHSSGGGSRGGSSSGGGYGSGGGGSSSVKGSSGE 628
Score = 31.6 bits (70), Expect = 0.51
Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 10 GEPGTPGGAGS--GGRSLRGGGGGAGGGGGGR 39
G G GG S GG GGG G GG GGGR
Sbjct: 91 GRGGGFGGGSSFGGGSGFSGGGFGGGGFGGGR 122
Score = 31.6 bits (70), Expect = 0.51
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 4 AGRTKEGEPGTPGGAGS---GGRSLRGGGGGAGGGGGG 38
+G + G G GG GS GG GG GG G GGG
Sbjct: 541 SGGRQSGSRGGSGGGGSISGGGYGSGGGSGGRYGSGGG 578
Score = 31.6 bits (70), Expect = 0.51
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 13 GTPGGAGSGGRSLRGGG--GGAGGGGGGREKRGRPESPRRRRSGERASPARRRGPGATT 69
G G GSGGR GGG GG+ GGG G+ S R G + G G ++
Sbjct: 562 GYGSGGGSGGRYGSGGGSKGGSISGGGYGSGGGKHSSGGGSRGGSSSGGGYGSGGGGSS 620
Score = 30.8 bits (68), Expect = 0.88
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 17 GAGSGGRSLRGGGGGAGGGGGGREKRGRPES 47
G GS G S GGG G+GGGG K E+
Sbjct: 599 GGGSRGGSSSGGGYGSGGGGSSSVKGSSGEA 629
Score = 30.4 bits (67), Expect = 1.1
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 13 GTPGGAGSGGRSLRGGGGGAGGGGGG 38
G GG GG S GG G +GGG GG
Sbjct: 90 GGRGGGFGGGSSFGGGSGFSGGGFGG 115
Score = 29.6 bits (65), Expect = 2.0
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 4 AGRTKEGEPGTPGGAGSGGRSLRGGGGGAGGG----GGGREKRGRPESPRRRRSGERASP 59
+G G G+ G GS G S+ GGG G+GGG GGG RG S SG S
Sbjct: 565 SGGGSGGRYGS--GGGSKGGSISGGGYGSGGGKHSSGGG--SRGGSSSGGGYGSGGGGSS 620
Query: 60 ARRRGPG 66
+ + G
Sbjct: 621 SVKGSSG 627
Score = 28.5 bits (62), Expect = 4.4
Identities = 18/35 (51%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 10 GEPGTPGGAGSGGRSLRGGGGG-------AGGGGG 37
G G GG G G RSL G GG AGGGGG
Sbjct: 48 GGGGGFGGGGFGSRSLVGLGGTKSISISVAGGGGG 82
Score = 28.5 bits (62), Expect = 4.4
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 5 GRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRG 43
G TK GG G G + GG GG GGG GG G
Sbjct: 67 GGTKSISISVAGGGGGFGAA--GGFGGRGGGFGGGSSFG 103
Score = 27.3 bits (59), Expect = 9.7
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 13 GTPGGAGSGGRSLRGG---GGGAGGGGGG 38
G GG G G GG GGG+G GGG
Sbjct: 84 GAAGGFGGRGGGFGGGSSFGGGSGFSGGG 112
Score = 27.3 bits (59), Expect = 9.7
Identities = 16/30 (53%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 17 GAGSGGRSLRGGGGG--AGGGGGGREKRGR 44
G G GG S GGG G GG GGG GR
Sbjct: 93 GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR 122
Score = 27.3 bits (59), Expect = 9.7
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 19 GSGGRSLRGGGGGAGG----GGGGREKRGR 44
GSGGR GGG + G G GGR+ R
Sbjct: 520 GSGGRGSSSGGGYSSGSSSYGSGGRQSGSR 549
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 42.0 bits (97), Expect = 4e-04
Identities = 27/71 (38%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 5 GRTKEGEPGTPGGAGS---GGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPAR 61
G + G GG G GGR G GGG GGGGGG + PR R G
Sbjct: 195 GNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGR----GG 250
Query: 62 RRGPGATTRPG 72
R G G + R G
Sbjct: 251 RGGMGGSDRGG 261
Score = 36.2 bits (82), Expect = 0.021
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 5 GRTKEGEPGTPGGAGSGGRSLRGGGGGA----GGGGGGREKRGRPESP 48
GR G G G G GG GGG G GGGGGG+++ G + P
Sbjct: 382 GRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCP 429
Score = 35.4 bits (80), Expect = 0.036
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 1 MQIAGRTKEGEPGTPGGAGSGGRSLRG-------GGGGAGGGGGGREKRGRPESPRRRRS 53
++++ T+ + GG G GGR G GGGG+GGGG G G ++R+
Sbjct: 364 IKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRA 423
Query: 54 GERASP 59
G+ P
Sbjct: 424 GDWKCP 429
Score = 32.0 bits (71), Expect = 0.39
Identities = 18/42 (42%), Positives = 19/42 (45%)
Query: 2 QIAGRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRG 43
Q G G G GG G GG + GG G GGGR RG
Sbjct: 211 QDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRG 252
Score = 32.0 bits (71), Expect = 0.39
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 5 GRTKEGEPGTPGGAGSG-GRSL-------RGGGGGAGGGGGGREKRGRPESPRRRRSGER 56
GR + G G GG G G RS RGGG G GG GG ++ G + R G R
Sbjct: 215 GRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSR 274
Score = 31.6 bits (70), Expect = 0.51
Identities = 21/71 (29%), Positives = 27/71 (38%)
Query: 15 PGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRRGPGATTRPGRW 74
P G G + GGG GGGGGG + + SG + G G + G+
Sbjct: 152 PQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQ 211
Query: 75 SLGSVFRKGEG 85
G R G G
Sbjct: 212 DRGGRGRGGSG 222
Score = 30.4 bits (67), Expect = 1.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 13 GTPGGAGSGG-----RSLRGGGGGAGGGGGGREKRG 43
G GG G GG +S GGG+GGG G +++ G
Sbjct: 166 GGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSG 201
Score = 30.4 bits (67), Expect = 1.1
Identities = 16/37 (43%), Positives = 17/37 (45%)
Query: 16 GGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRR 52
GG G R RGGG G G G + RG RR R
Sbjct: 488 GGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRER 524
Score = 28.9 bits (63), Expect = 3.3
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 2 QIAGRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSG----ERA 57
Q G+ + P G + S GGGGG GGGG + + S G +++
Sbjct: 141 QSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQS 200
Query: 58 SPARRRGPGATTRPGRWSLGSVFRKGEGTWRRRRLLAAADPR 99
G G R GR GS G G R +PR
Sbjct: 201 GGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPR 242
Score = 28.5 bits (62), Expect = 4.4
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 18/85 (21%)
Query: 9 EGEPGTPGGAGSGGR---SLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRRGP 65
+G G PGG+ GG RGG GG GG R R G+R RG
Sbjct: 453 DGPGGGPGGSHMGGNYGDDRRGGRGGYDRGG------------YRGRGGDRGGFRGGRGG 500
Query: 66 GATTRPGRWSLGSVFRKGEGTWRRR 90
G G + G + +GE RR
Sbjct: 501 GDR---GGFGPGKMDSRGEHRQDRR 522
Score = 28.5 bits (62), Expect = 4.4
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 3 IAGRTKEGEPGTPGGAGSGGRSLRGGG-----GGAGGGGGGREKRGRPESPRRRRSGERA 57
+ G + G GG GG RGG GG GGG G G+ +S R R
Sbjct: 464 MGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRE 523
Query: 58 SP 59
P
Sbjct: 524 RP 525
Score = 27.3 bits (59), Expect = 9.7
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 16 GGAGSGGRS--LRGGGGGAGGGGGGREKRGRPESPRR----RRSGERASPARRRGPGATT 69
GG+G GGR GGGGG G G K P R + + GPG
Sbjct: 400 GGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGG-- 457
Query: 70 RPGRWSLGSVF----RKGEGTWRR 89
PG +G + R G G + R
Sbjct: 458 GPGGSHMGGNYGDDRRGGRGGYDR 481
>gi|116325989 hyperpolarization activated cyclic nucleotide-gated
potassium channel 1 [Homo sapiens]
Length = 890
Score = 41.6 bits (96), Expect = 5e-04
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 13/59 (22%)
Query: 4 AGRTKEGEPGTPGGAGSGGRS--------LRGGGGGAGGGGGGREKRG---RPESPRRR 51
A + G P PGG G+G + + GGGGG GGGGGG E G E PRR+
Sbjct: 34 AAEKRLGTP--PGGGGAGAKEHGNSVCFKVDGGGGGGGGGGGGEEPAGGFEDAEGPRRQ 90
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 41.6 bits (96), Expect = 5e-04
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 4 AGRTKEGEPGTP-GGAGSGGRSLRGGGGGA--GGGGGGREKRGRPESPRRRRS 53
A +K GE G GG+G GG GGGG + GGGGGG G P +++S
Sbjct: 146 AASSKPGEKGDKVGGSGGGGHGGGGGGGSSNAGGGGGGASGGGANSKPAQKKS 198
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 41.6 bits (96), Expect = 5e-04
Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 7 TKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRR--- 63
+K GEP P G G GG GG GG GGG G + G P+ P R + A++R
Sbjct: 155 SKLGEP-PPLGEGGGG----GGEGGGAGGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGS 209
Query: 64 -GPGATTRPGRWSLG 77
G GA+ P S G
Sbjct: 210 GGEGASPSPSSSSAG 224
Score = 28.5 bits (62), Expect = 4.4
Identities = 26/76 (34%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 10 GEPGTPGGAGSGGRSLRGGGGGAGGGGG-------GREKRGRPESPRRRRSGERASPARR 62
GE G GG G G GGG G GG G +G R GE ASP+
Sbjct: 164 GEGGGGGGEGGGA----GGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASPSPS 219
Query: 63 RGPGATTRPGRWSLGS 78
T PG S S
Sbjct: 220 SSSAGKT-PGTGSRNS 234
Score = 27.3 bits (59), Expect = 9.7
Identities = 18/74 (24%), Positives = 27/74 (36%)
Query: 4 AGRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRR 63
+G + G P P G G+ +R G GG G + + +G R S +
Sbjct: 180 SGEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTPGTGSRNSGSGVA 239
Query: 64 GPGATTRPGRWSLG 77
G G+ W G
Sbjct: 240 GGGSGGGGSYWKEG 253
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 41.6 bits (96), Expect = 5e-04
Identities = 27/68 (39%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 10 GEPGTPGGAGSGG----RSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRRGP 65
G G GG G GG R GGGGG GGGGGGR G R R G + G
Sbjct: 26 GRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGR-GRGGKRGNQSGK 84
Query: 66 GATTRPGR 73
P R
Sbjct: 85 NVMVEPHR 92
Score = 35.0 bits (79), Expect = 0.047
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 11 EPG-TPGGAGSGGRSL---RGGGGGAGGGGGGREKRG 43
+PG +P G G GGR RGG GG GG GGGR + G
Sbjct: 2 KPGFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGG 38
Score = 33.9 bits (76), Expect = 0.10
Identities = 19/33 (57%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 13 GTPGGAGS-GGRSLRGGGGGAGGGGGGREKRGR 44
G GG G GGR RGG GG G GGG RGR
Sbjct: 13 GGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGR 45
Score = 33.9 bits (76), Expect = 0.10
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 5 GRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGER--ASPARR 62
GR + G G GG G G RGGGG GG GR + G+ R +SG+ P R
Sbjct: 42 GRGRGGGGGGGGGGGGG----RGGGGFHSGGNRGRGRGGK----RGNQSGKNVMVEPHRH 93
Query: 63 RG 64
G
Sbjct: 94 EG 95
Score = 30.4 bits (67), Expect = 1.1
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 10 GEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRG 43
G G G GGR GGG G GGG GR + G
Sbjct: 14 GRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGG 47
Score = 29.6 bits (65), Expect = 2.0
Identities = 22/62 (35%), Positives = 24/62 (38%)
Query: 5 GRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRRG 64
GR G+ G GG G G GGG G G GG G R G + R RG
Sbjct: 14 GRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRG 73
Query: 65 PG 66
G
Sbjct: 74 RG 75
>gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2
[Homo sapiens]
Length = 994
Score = 41.6 bits (96), Expect = 5e-04
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 8 KEGEPGTPGGAGSGGRS-----LRGGGGGAGGGGGGREKRGR 44
++G P + GG GG + RG GGG GGGGGGR RGR
Sbjct: 11 RDGGPRSSGGGYGGGPAGGHGGNRGSGGGGGGGGGGRGGRGR 52
Score = 31.6 bits (70), Expect = 0.51
Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 10 GEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRRGPGATT 69
G G P +G G GGG AGG GG R G R G P +G
Sbjct: 10 GRDGGPRSSGGGY-----GGGPAGGHGGNRGSGGGGGGGGGGRGGRGRHPGHLKG----R 60
Query: 70 RPGRWSLGSVFRKGEGTWRRRRLLAAADPR 99
G W +K + R+ R + D R
Sbjct: 61 EIGMWYAKKQGQKNKEAERQERAVVHMDER 90
>gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1
[Homo sapiens]
Length = 1008
Score = 41.6 bits (96), Expect = 5e-04
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 8 KEGEPGTPGGAGSGGRS-----LRGGGGGAGGGGGGREKRGR 44
++G P + GG GG + RG GGG GGGGGGR RGR
Sbjct: 11 RDGGPRSSGGGYGGGPAGGHGGNRGSGGGGGGGGGGRGGRGR 52
Score = 31.6 bits (70), Expect = 0.51
Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 10 GEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRRGPGATT 69
G G P +G G GGG AGG GG R G R G P +G
Sbjct: 10 GRDGGPRSSGGGY-----GGGPAGGHGGNRGSGGGGGGGGGGRGGRGRHPGHLKG----R 60
Query: 70 RPGRWSLGSVFRKGEGTWRRRRLLAAADPR 99
G W +K + R+ R + D R
Sbjct: 61 EIGMWYAKKQGQKNKEAERQERAVVHMDER 90
>gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [Homo
sapiens]
Length = 167
Score = 41.6 bits (96), Expect = 5e-04
Identities = 21/29 (72%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 26 RGGGGGAGGGGGGREKRGRPESPRRRRSG 54
RGGGGG GGGGGGRE R R S R RSG
Sbjct: 138 RGGGGGGGGGGGGRE-RDRRRSRDRERSG 165
Score = 31.6 bits (70), Expect = 0.51
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 2 QIAGRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERA 57
++ GR ++ RS G GG GGGGGG GR RR R ER+
Sbjct: 111 ELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGG--GGGRERDRRRSRDRERS 164
>gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [Homo
sapiens]
Length = 240
Score = 41.6 bits (96), Expect = 5e-04
Identities = 21/29 (72%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 26 RGGGGGAGGGGGGREKRGRPESPRRRRSG 54
RGGGGG GGGGGGRE R R S R RSG
Sbjct: 211 RGGGGGGGGGGGGRE-RDRRRSRDRERSG 238
Score = 31.6 bits (70), Expect = 0.51
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 2 QIAGRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERA 57
++ GR ++ RS G GG GGGGGG GR RR R ER+
Sbjct: 184 ELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGG--GGGRERDRRRSRDRERS 237
>gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Homo
sapiens]
Length = 240
Score = 41.6 bits (96), Expect = 5e-04
Identities = 21/29 (72%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 26 RGGGGGAGGGGGGREKRGRPESPRRRRSG 54
RGGGGG GGGGGGRE R R S R RSG
Sbjct: 211 RGGGGGGGGGGGGRE-RDRRRSRDRERSG 238
Score = 31.6 bits (70), Expect = 0.51
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 2 QIAGRTKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERA 57
++ GR ++ RS G GG GGGGGG GR RR R ER+
Sbjct: 184 ELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGG--GGGRERDRRRSRDRERS 237
>gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo
sapiens]
Length = 1386
Score = 41.6 bits (96), Expect = 5e-04
Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 12/46 (26%)
Query: 8 KEGEPGTPGGAGS--GGRSLR----------GGGGGAGGGGGGREK 41
++G+PG GG GS GGR R GGGGG GGGGGG K
Sbjct: 7 RKGKPGKGGGKGSSRGGRGGRSHASKSHGSGGGGGGGGGGGGGNRK 52
>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
Length = 920
Score = 41.2 bits (95), Expect = 6e-04
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 8 KEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGRE 40
+EG+ P G G GG GGGGG GGGGGG E
Sbjct: 442 EEGQLYGPCGGGGGGGGGGGGGGGGGGGGGGGE 474
Score = 34.7 bits (78), Expect = 0.061
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 10 GEPGTPGGAGSGGRSLRGGGGGAGGGGGG 38
G G GG G GG GGGGG GGG G
Sbjct: 448 GPCGGGGGGGGGGGGGGGGGGGGGGGEAG 476
Score = 32.7 bits (73), Expect = 0.23
Identities = 16/37 (43%), Positives = 17/37 (45%)
Query: 13 GTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPR 49
G GG G GG GGGGG GG G G P+
Sbjct: 452 GGGGGGGGGGGGGGGGGGGGGGEAGAVAPYGYTRPPQ 488
>gi|194248068 synaptic Ras GTPase activating protein 1 [Homo
sapiens]
Length = 1343
Score = 41.2 bits (95), Expect = 6e-04
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 3 IAGR--TKEGEPGT-PGGAGSGGRSLRGGGGGAGGGGGGREKRGRP 45
+AGR T++ P T P G+G G GGGGG+GGG GG+ K G P
Sbjct: 353 LAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCP 398
Score = 34.7 bits (78), Expect = 0.061
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 18/76 (23%)
Query: 12 PGTPGGAGSGGRSLRGGGGGAGGGGGGRE---KRGR--------PESPRRRRSGERASPA 60
P P +G GG G GGG+GGGGGG+ +RG+ + PR SP
Sbjct: 1041 PQRPAPSGPGG----GSGGGSGGGGGGQPPPLQRGKSQQLTVSAAQKPRPSSGNLLQSPE 1096
Query: 61 RRRGPGATTRPGRWSL 76
GP RP + SL
Sbjct: 1097 PSYGP---ARPRQQSL 1109
Score = 28.1 bits (61), Expect = 5.7
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 27 GGGGGAGGGGGG 38
GG GG+GGGGGG
Sbjct: 1116 GGSGGSGGGGGG 1127
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 41.2 bits (95), Expect = 6e-04
Identities = 24/65 (36%), Positives = 28/65 (43%)
Query: 14 TPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRRGPGATTRPGR 73
T GGA G GGGGGAGGGGGG + S A+ A A G
Sbjct: 129 TGGGAAGGPGDDSGGGGGAGGGGGGGSSSSPAATSAAATSAAAAAAAAAAAAAAAAGAGA 188
Query: 74 WSLGS 78
S+G+
Sbjct: 189 PSVGA 193
Score = 34.7 bits (78), Expect = 0.061
Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 15 PGGAGSGGRSLRGGGGGAGGG 35
PGG G GG S GGGGGAGGG
Sbjct: 18 PGGGGGGGGS-SGGGGGAGGG 37
Score = 29.6 bits (65), Expect = 2.0
Identities = 24/68 (35%), Positives = 26/68 (38%), Gaps = 19/68 (27%)
Query: 12 PGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRRG------- 64
PG GG G G GG GG GGG RP R+G A+ A G
Sbjct: 18 PGGGGGGG-------GSSGGGGGAGGGYSSACRPGP----RAGGAAAAAACGGGAALGLL 66
Query: 65 -PGATTRP 71
PG T P
Sbjct: 67 PPGKTQSP 74
Score = 27.3 bits (59), Expect = 9.7
Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 7 TKEGEPGTPGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRRGPG 66
T G G PG GG GGGGG G S + A+ A G G
Sbjct: 129 TGGGAAGGPGDDSGGGGGAGGGGGG-GSSSSPAATSAAATSAAAAAAAAAAAAAAAAGAG 187
Query: 67 A 67
A
Sbjct: 188 A 188
>gi|44917619 kelch domain containing 10 [Homo sapiens]
Length = 442
Score = 41.2 bits (95), Expect = 6e-04
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 13 GTPGGAGSGGRSLRGGGGGAGGGGGGREKR-----GRPESPRRRRSGERASPARRR 63
G GAG GG GG GG+GG G G+ R GRP P +++ R P RRR
Sbjct: 15 GGAAGAGGGGSGAGGGSGGSGGRGTGQLNRFVQLSGRPHLPGKKKI--RWDPVRRR 68
Score = 28.1 bits (61), Expect = 5.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 23 RSLRGGGGGAGGGGGGREKRGRPESPRRRRSGE 55
R+ R GGG AG GGGG G R +G+
Sbjct: 9 RNRRRGGGAAGAGGGGSGAGGGSGGSGGRGTGQ 41
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,820,123
Number of Sequences: 37866
Number of extensions: 696836
Number of successful extensions: 21193
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 542
Number of HSP's that attempted gapping in prelim test: 6102
Number of HSP's gapped (non-prelim): 8851
length of query: 211
length of database: 18,247,518
effective HSP length: 98
effective length of query: 113
effective length of database: 14,536,650
effective search space: 1642641450
effective search space used: 1642641450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.