Guide to the Human Genome
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Name: LOC100291550 Sequence: fasta or formatted (205aa) NCBI GI: 239747357
Description:

PREDICTED: hypothetical protein XP_002346431

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         16           4
 C cysteine            2.0          4           1
 D aspartate           2.4          5           2
 E glutamate           8.3         17           2
 F phenylalanine       2.0          4           1
 G glycine             9.8         20           2
 H histidine           1.5          3           1
 I isoleucine          2.9          6           1
 K lysine              7.3         15           2
 L leucine             9.3         19           2
 M methionine          0.5          1           1
 N asparagine          2.0          4           1
 P proline             6.8         14           2
 Q glutamine           2.0          4           1
 R arginine           16.6         34           6
 S serine              7.8         16           2
 T threonine           5.4         11           2
 V valine              3.9          8           1
 W tryptophan          1.0          2           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346431 
LOC100288548          0.670   PREDICTED: hypothetical protein XP_002342129 
LOC100133885          0.031   PREDICTED: hypothetical protein 
LOC100292196          0.031   PREDICTED: hypothetical protein 
FLJ37078              0.028   hypothetical protein LOC222183 
LOC100294073          0.026   PREDICTED: hypothetical protein, partial 
HDGF2                 0.023   hepatoma-derived growth factor-related protein 2 iso...
HDGF2                 0.023   hepatoma-derived growth factor-related protein 2 iso...
UBAP2L                0.021   ubiquitin associated protein 2-like isoform a [Homo...
UBAP2L                0.021   ubiquitin associated protein 2-like isoform b [Homo...
LOC347549             0.021   PREDICTED: hypothetical protein 
LOC100292770          0.021   PREDICTED: hypothetical protein 
LOC347549             0.021   PREDICTED: hypothetical protein 
LOC100291053          0.021   PREDICTED: hypothetical protein XP_002348074 
LOC347549             0.021   PREDICTED: hypothetical protein 
LOC100287442          0.021   PREDICTED: hypothetical protein XP_002343752 
IDUA                  0.021   alpha-L-iduronidase precursor 
LOC100127891          0.021   PREDICTED: hypothetical protein 
LOC643355             0.021   PREDICTED: hypothetical protein 
LOC100291206          0.021   PREDICTED: hypothetical protein XP_002347014 
LOC100127891          0.021   PREDICTED: similar to hCG2042508 
LOC643355             0.021   PREDICTED: hypothetical protein 
LOC100127891          0.021   PREDICTED: similar to hCG2042508 
LOC643355             0.021   PREDICTED: hypothetical protein 
LOC100127891          0.021   PREDICTED: similar to hCG2042508 
KDM2B                 0.021   F-box and leucine-rich repeat protein 10 isoform b [...
C19orf29              0.021   chromosome 19 open reading frame 29 
C19orf29              0.021   chromosome 19 open reading frame 29 
LOC146429             0.018   PREDICTED: hypothetical protein LOC146429 
LOC146429             0.018   PREDICTED: hypothetical protein LOC146429 isoform 6...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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