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Search of human proteins with 239741035
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741035 PREDICTED: similar to hCG2041787 [Homo sapiens]
(269 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752693 PREDICTED: similar to hCG2041787 [Homo sapiens] 561 e-160
gi|239741035 PREDICTED: similar to hCG2041787 [Homo sapiens] 561 e-160
gi|239747227 PREDICTED: similar to hCG2041787 [Homo sapiens] 378 e-105
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 42 4e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 37 0.018
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 37 0.018
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 37 0.018
gi|169210350 PREDICTED: hypothetical protein [Homo sapiens] 37 0.024
gi|113426339 PREDICTED: hypothetical protein [Homo sapiens] 37 0.024
gi|113426005 PREDICTED: hypothetical protein [Homo sapiens] 37 0.024
gi|112821681 G protein-regulated inducer of neurite outgrowth 1 ... 37 0.024
gi|48762934 alpha 2 type I collagen [Homo sapiens] 36 0.031
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 36 0.031
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 36 0.040
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 36 0.040
gi|18641360 collectin sub-family member 12 [Homo sapiens] 36 0.040
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 35 0.069
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 35 0.090
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens] 35 0.090
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 35 0.090
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens] 35 0.090
gi|27262647 ataxin 2 related protein isoform A [Homo sapiens] 35 0.090
gi|27262651 ataxin 2 related protein isoform D [Homo sapiens] 35 0.090
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 34 0.12
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 34 0.12
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 34 0.12
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 34 0.12
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 34 0.12
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 34 0.12
gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo... 34 0.15
>gi|239752693 PREDICTED: similar to hCG2041787 [Homo sapiens]
Length = 269
Score = 561 bits (1446), Expect = e-160
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MVAYEHDRHTTRTTDWTSETEEEKGHTGRGRRQLQASVGSAKKPSPCGELVGWLGRGERD 60
MVAYEHDRHTTRTTDWTSETEEEKGHTGRGRRQLQASVGSAKKPSPCGELVGWLGRGERD
Sbjct: 1 MVAYEHDRHTTRTTDWTSETEEEKGHTGRGRRQLQASVGSAKKPSPCGELVGWLGRGERD 60
Query: 61 VARARDVWVARKPFPGCETAFHIWASMDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGP 120
VARARDVWVARKPFPGCETAFHIWASMDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGP
Sbjct: 61 VARARDVWVARKPFPGCETAFHIWASMDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGP 120
Query: 121 ATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCA 180
ATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCA
Sbjct: 121 ATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCA 180
Query: 181 GRRQDPGLPGTGWRHFFSLHGSSRESLSAEETGRVRTTHAPGKLLKKASSSNCASSLQYP 240
GRRQDPGLPGTGWRHFFSLHGSSRESLSAEETGRVRTTHAPGKLLKKASSSNCASSLQYP
Sbjct: 181 GRRQDPGLPGTGWRHFFSLHGSSRESLSAEETGRVRTTHAPGKLLKKASSSNCASSLQYP 240
Query: 241 LNSSKQTLFPADIAGTILVNTEWELSTHL 269
LNSSKQTLFPADIAGTILVNTEWELSTHL
Sbjct: 241 LNSSKQTLFPADIAGTILVNTEWELSTHL 269
>gi|239741035 PREDICTED: similar to hCG2041787 [Homo sapiens]
Length = 269
Score = 561 bits (1446), Expect = e-160
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MVAYEHDRHTTRTTDWTSETEEEKGHTGRGRRQLQASVGSAKKPSPCGELVGWLGRGERD 60
MVAYEHDRHTTRTTDWTSETEEEKGHTGRGRRQLQASVGSAKKPSPCGELVGWLGRGERD
Sbjct: 1 MVAYEHDRHTTRTTDWTSETEEEKGHTGRGRRQLQASVGSAKKPSPCGELVGWLGRGERD 60
Query: 61 VARARDVWVARKPFPGCETAFHIWASMDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGP 120
VARARDVWVARKPFPGCETAFHIWASMDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGP
Sbjct: 61 VARARDVWVARKPFPGCETAFHIWASMDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGP 120
Query: 121 ATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCA 180
ATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCA
Sbjct: 121 ATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCA 180
Query: 181 GRRQDPGLPGTGWRHFFSLHGSSRESLSAEETGRVRTTHAPGKLLKKASSSNCASSLQYP 240
GRRQDPGLPGTGWRHFFSLHGSSRESLSAEETGRVRTTHAPGKLLKKASSSNCASSLQYP
Sbjct: 181 GRRQDPGLPGTGWRHFFSLHGSSRESLSAEETGRVRTTHAPGKLLKKASSSNCASSLQYP 240
Query: 241 LNSSKQTLFPADIAGTILVNTEWELSTHL 269
LNSSKQTLFPADIAGTILVNTEWELSTHL
Sbjct: 241 LNSSKQTLFPADIAGTILVNTEWELSTHL 269
>gi|239747227 PREDICTED: similar to hCG2041787 [Homo sapiens]
Length = 183
Score = 378 bits (970), Expect = e-105
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 87 MDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPR 146
MDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPR
Sbjct: 1 MDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPR 60
Query: 147 ATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRHFFSLHGSSRES 206
ATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRHFFSLHGSSRES
Sbjct: 61 ATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRHFFSLHGSSRES 120
Query: 207 LSAEETGRVRTTHAPGKLLKKASSSNCASSLQYPLNSSKQTLFPADIAGTILVNTEWELS 266
LSAEETGRVRTTHAPGKLLKKASSSNCASSLQYPLNSSKQTLFPADIAGTILVNTEWELS
Sbjct: 121 LSAEETGRVRTTHAPGKLLKKASSSNCASSLQYPLNSSKQTLFPADIAGTILVNTEWELS 180
Query: 267 THL 269
THL
Sbjct: 181 THL 183
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 42.4 bits (98), Expect = 4e-04
Identities = 32/87 (36%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 105 SPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRT-HLHKAV 163
+P G G++ +RGP LA AP R G G P GP G + PG P A T L
Sbjct: 670 APGGKGDAGAPGERGPPGLAGAPGLRGGAG-PPGPEGGKGAAGPPGPPGAAGTPGLQGMP 728
Query: 164 GVREAWQHHLSVGFGCAGRRQDPGLPG 190
G R G G G + D G PG
Sbjct: 729 GERG--------GLGSPGPKGDKGEPG 747
Score = 31.2 bits (69), Expect = 0.99
Identities = 42/153 (27%), Positives = 48/153 (31%), Gaps = 32/153 (20%)
Query: 24 KGHTGR-GRRQLQASVGSAKKPSPCG--ELVGWLGRGERDVARARDVWVARKPFPGCETA 80
KG +G+ G L G P P G L G G RD D R PG
Sbjct: 977 KGESGKPGANGLSGERGP---PGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPG---- 1029
Query: 81 FHIWASMDLGSQAGRPSVSVSEAPSPEG----AGESAPSADRGPATLARAPLRRAGIGCP 136
D G + P P G AG+S + GPA A AP G P
Sbjct: 1030 ----GKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAP 1085
Query: 137 --------------EGPVGFRRPRATPGTPEAP 155
G G + R PG P AP
Sbjct: 1086 GPQGPRGDKGETGERGAAGIKGHRGFPGNPGAP 1118
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 37.0 bits (84), Expect = 0.018
Identities = 24/55 (43%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 104 PSPEGA----GESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEA 154
P P GA GES PS GP AP R G P GP GF P G P A
Sbjct: 772 PGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPG-PPGPAGFAGPPGADGQPGA 825
Score = 34.3 bits (77), Expect = 0.12
Identities = 56/200 (28%), Positives = 70/200 (35%), Gaps = 36/200 (18%)
Query: 30 GRRQLQASVGSAKKPSPCGE--LVGWLGRGERDVARARDVWVARKPFPGCETAFHIWASM 87
G++ + G P P G L G G R+ A + R PG A
Sbjct: 983 GKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPG--------AKG 1034
Query: 88 DLGSQ--AGRPSV-SVSEAPSPEG-AGESAPSADRGPATLARAPLRRAGIGCPEGPVGFR 143
D G AG P AP P G AG+S + GPA G P GPVG R
Sbjct: 1035 DRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPA----------GPAGPVGPVGAR 1084
Query: 144 RPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRHFFSLHGSS 203
P P+ PR + E + G +G + PG PG+ G S
Sbjct: 1085 GPAG----PQGPRGDKGE---TGEQGDRGIKGHRGFSGLQGPPGPPGSPGE-----QGPS 1132
Query: 204 RESLSAEETGRVRTTHAPGK 223
S A G + APGK
Sbjct: 1133 GASGPAGPRGPPGSAGAPGK 1152
Score = 29.6 bits (65), Expect = 2.9
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 14/76 (18%)
Query: 89 LGSQAGRPSVSVSEAPSPEGA-------GESAPSADRGPATLARAP--LRRAGIGCPEGP 139
L + GRP AP P GA G + P GPA P + G P+GP
Sbjct: 306 LPGERGRPG-----APGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGP 360
Query: 140 VGFRRPRATPGTPEAP 155
G P+ G P P
Sbjct: 361 RGSEGPQGVRGEPGPP 376
Score = 29.6 bits (65), Expect = 2.9
Identities = 26/89 (29%), Positives = 31/89 (34%), Gaps = 21/89 (23%)
Query: 88 DLGSQAGRPSVSVSEAPSPEGA-------GESAPSADRGPATLARAPLRRAGIGCP---- 136
D G + R + P P G+ G S P+ RGP A AP + G P
Sbjct: 1104 DRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIG 1163
Query: 137 ----------EGPVGFRRPRATPGTPEAP 155
GPVG P PG P P
Sbjct: 1164 PPGPRGRTGDAGPVGPPGPPGPPGPPGPP 1192
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 37.0 bits (84), Expect = 0.018
Identities = 51/180 (28%), Positives = 62/180 (34%), Gaps = 52/180 (28%)
Query: 29 RGRRQLQASVGSAKKPSPCGELVGWLGRGERDVARARDVWVA-----RKPFPGCETAFHI 83
R R AS G ++ PSP G AR R W+ R P P
Sbjct: 22 RARGPAIASAGYSRPPSPVGR------------ARRRGTWLRVLRGPRAPSPA------- 62
Query: 84 WASMDLGSQAGRPSVSVSEAPSPEGAGESAPS-ADRGPATLARAPLRRAG--IGCPEGPV 140
P++ P E + P+ A RGP P R AG G E
Sbjct: 63 ------------PALPARARPPRENRKRAVPARAARGP------PKRPAGGQTGGVEAAS 104
Query: 141 GF-----RRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRH 195
G RRPR P P PR + + EA G +GRR D G G+GW H
Sbjct: 105 GEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRG--GSGWSH 162
Score = 30.0 bits (66), Expect = 2.2
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 89 LGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRAT 148
LG Q G P + P+ AG S P P+ + RA R + GP A
Sbjct: 11 LGGQWGTPLYPRARGPAIASAGYSRP-----PSPVGRARRRGTWLRVLRGPRAPSPAPAL 65
Query: 149 PGTPEAPRTHLHKAVGVREA 168
P PR + +AV R A
Sbjct: 66 PARARPPRENRKRAVPARAA 85
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 37.0 bits (84), Expect = 0.018
Identities = 51/180 (28%), Positives = 62/180 (34%), Gaps = 52/180 (28%)
Query: 29 RGRRQLQASVGSAKKPSPCGELVGWLGRGERDVARARDVWVA-----RKPFPGCETAFHI 83
R R AS G ++ PSP G AR R W+ R P P
Sbjct: 22 RARGPAIASAGYSRPPSPVGR------------ARRRGTWLRVLRGPRAPSPA------- 62
Query: 84 WASMDLGSQAGRPSVSVSEAPSPEGAGESAPS-ADRGPATLARAPLRRAG--IGCPEGPV 140
P++ P E + P+ A RGP P R AG G E
Sbjct: 63 ------------PALPARARPPRENRKRAVPARAARGP------PKRPAGGQTGGVEAAS 104
Query: 141 GF-----RRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRH 195
G RRPR P P PR + + EA G +GRR D G G+GW H
Sbjct: 105 GEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRG--GSGWSH 162
Score = 30.0 bits (66), Expect = 2.2
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 89 LGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRAT 148
LG Q G P + P+ AG S P P+ + RA R + GP A
Sbjct: 11 LGGQWGTPLYPRARGPAIASAGYSRP-----PSPVGRARRRGTWLRVLRGPRAPSPAPAL 65
Query: 149 PGTPEAPRTHLHKAVGVREA 168
P PR + +AV R A
Sbjct: 66 PARARPPRENRKRAVPARAA 85
>gi|169210350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 36.6 bits (83), Expect = 0.024
Identities = 32/118 (27%), Positives = 42/118 (35%), Gaps = 10/118 (8%)
Query: 56 RGERDVARARDVWVARKPFPGCETAFHIWASMDLGSQ----AGRPSVSVSEAPSPEGAGE 111
RGER+ FPG A A D + A P + A P G+
Sbjct: 53 RGEREADEGEAT-----SFPGPCAAHVAGAPEDEDDEEQAVAAAPHAHTATASPPPGSAR 107
Query: 112 SAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREAW 169
A + R + R R G+G GPVG PR P H+ + +G E W
Sbjct: 108 RAAAVARHAGSEGRG-WRPPGLGREAGPVGGAEPREAGSIAGRPAPHVPRPLGGEEVW 164
>gi|113426339 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 36.6 bits (83), Expect = 0.024
Identities = 32/118 (27%), Positives = 42/118 (35%), Gaps = 10/118 (8%)
Query: 56 RGERDVARARDVWVARKPFPGCETAFHIWASMDLGSQ----AGRPSVSVSEAPSPEGAGE 111
RGER+ FPG A A D + A P + A P G+
Sbjct: 53 RGEREADEGEAT-----SFPGPCAAHVAGAPEDEDDEEQAVAAAPHAHTATASPPPGSAR 107
Query: 112 SAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREAW 169
A + R + R R G+G GPVG PR P H+ + +G E W
Sbjct: 108 RAAAVARHAGSEGRG-WRPPGLGREAGPVGGAEPREAGSIAGRPAPHVPRPLGGEEVW 164
>gi|113426005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 36.6 bits (83), Expect = 0.024
Identities = 32/118 (27%), Positives = 42/118 (35%), Gaps = 10/118 (8%)
Query: 56 RGERDVARARDVWVARKPFPGCETAFHIWASMDLGSQ----AGRPSVSVSEAPSPEGAGE 111
RGER+ FPG A A D + A P + A P G+
Sbjct: 53 RGEREADEGEAT-----SFPGPCAAHVAGAPEDEDDEEQAVAAAPHAHTATASPPPGSAR 107
Query: 112 SAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREAW 169
A + R + R R G+G GPVG PR P H+ + +G E W
Sbjct: 108 RAAAVARHAGSEGRG-WRPPGLGREAGPVGGAEPREAGSIAGRPAPHVPRPLGGEEVW 164
>gi|112821681 G protein-regulated inducer of neurite outgrowth 1
[Homo sapiens]
Length = 1008
Score = 36.6 bits (83), Expect = 0.024
Identities = 43/141 (30%), Positives = 54/141 (38%), Gaps = 16/141 (11%)
Query: 30 GRRQLQASVGSAKKPSPCGELVGWL-GRGERDVARARDVWVARKPFPGCETAFHIWASMD 88
G++ L+A+ + SPC E G RD W A P P E D
Sbjct: 764 GQKDLEAA---GAERSPCPEAAAPPPGPRTRDNFTKAPSWEASAPPPPRE---------D 811
Query: 89 LGSQAGRP---SVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRP 145
G+QAG SV+VS +GAG SA S P + R AG+ G R
Sbjct: 812 AGTQAGAQACVSVAVSPMSPQDGAGGSAFSFQAAPRAPSPPSRRDAGLQVSLGAAETRSV 871
Query: 146 RATPGTPEAPRTHLHKAVGVR 166
P TP+A V VR
Sbjct: 872 ATGPMTPQAAAPPAFPEVRVR 892
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 36.2 bits (82), Expect = 0.031
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 90 GSQAGRPSVSVSEAPSPEGA----GESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRP 145
G R + AP P GA GE+ + GPA +P R +G P GP GF P
Sbjct: 670 GRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVG-PAGPNGFAGP 728
Query: 146 RATPGTPEA 154
G P A
Sbjct: 729 AGAAGQPGA 737
Score = 31.2 bits (69), Expect = 0.99
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 98 VSVSEAPSPEG----AGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPE 153
V + AP P G AG+ + GP+ P G P GP G R + PG +
Sbjct: 957 VGAAGAPGPHGPVGPAGKHGNRGETGPSGPV-GPAGAVGPRGPSGPQGIRGDKGEPG-EK 1014
Query: 154 APRTHLHKAVGVREAWQHHLSVGF-GCAGRRQDPGLPGT 191
PR G+ H+ G G AG D G PG+
Sbjct: 1015 GPR-------GLPGLKGHNGLQGLPGIAGHHGDQGAPGS 1046
Score = 30.0 bits (66), Expect = 2.2
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 104 PSPEGA-GESAPSADRGPATLARAP---------LRRAGIGCPEGPVGFRRPRATPGTPE 153
P P G GE P+ GP P G+G GP+G PR PG
Sbjct: 47 PGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAG 106
Query: 154 AP 155
AP
Sbjct: 107 AP 108
Score = 29.6 bits (65), Expect = 2.9
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Query: 96 PSVSVSEAPSPEGAGESAPSADRGPATLA--RAPLRRAGIGCPEGPVGFRRPRATPGTPE 153
P+ S E+ + G + P GP+ R P AG P GP G R + G P
Sbjct: 350 PAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPG 409
Query: 154 AP-RTHLHKAVGVREA-WQHHLSVGFGCAGRRQDPGLPG 190
A R + G R A + G AGR +PGL G
Sbjct: 410 ADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMG 448
Score = 29.3 bits (64), Expect = 3.8
Identities = 38/136 (27%), Positives = 46/136 (33%), Gaps = 20/136 (14%)
Query: 109 AGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREA 168
AG+ +RG A+ P G+ P GPVG P A P P P G R
Sbjct: 732 AGQPGAKGERG----AKGPKGENGVVGPTGPVGAAGP-AGPNGPPGP-------AGSRGD 779
Query: 169 WQHHLSVGF-GCAGRRQDPGLPG-------TGWRHFFSLHGSSRESLSAEETGRVRTTHA 220
GF G AGR PG G G L G + TG V
Sbjct: 780 GGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGP 839
Query: 221 PGKLLKKASSSNCASS 236
PG +K S ++
Sbjct: 840 PGFAGEKGPSGEAGTA 855
Score = 28.9 bits (63), Expect = 4.9
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 110 GESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREAW 169
G + P +RGP +G P GP+G R P PG P+ + V A
Sbjct: 583 GPAGPRGERGPPG-------ESGAAGPTGPIGSRGPSGPPG-PDGNKGEPGVVGAVGTAG 634
Query: 170 QHHLSVGFGCAGRRQDPGLPG 190
S G G R G+PG
Sbjct: 635 PSGPS---GLPGERGAAGIPG 652
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 36.2 bits (82), Expect = 0.031
Identities = 36/113 (31%), Positives = 41/113 (36%), Gaps = 22/113 (19%)
Query: 91 SQAGRPSVSVSEAPSPEGAGESAPSADRGPATLA--RAPLRRAGIGCP-----------E 137
S G+P V P G P D GPA L R P GI P +
Sbjct: 103 SAVGKPGVPGLPG-KPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQ 161
Query: 138 GPVGFRRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 190
GP G PR PG AP GV +G+G GR + GLPG
Sbjct: 162 GPTGAPGPRGFPGEKGAP--------GVPGMNGQKGEMGYGAPGRPGERGLPG 206
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 35.8 bits (81), Expect = 0.040
Identities = 32/105 (30%), Positives = 34/105 (32%), Gaps = 24/105 (22%)
Query: 90 GSQAGRPSVSVSEAPSPEGA----GESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRP 145
G GR P P GA GE P G A AP R G P GP GF P
Sbjct: 780 GKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETG-PPGPAGFAGP 838
Query: 146 RATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 190
G P A G AG++ D G PG
Sbjct: 839 PGADGQPGAKGEQ-------------------GEAGQKGDAGAPG 864
Score = 31.2 bits (69), Expect = 0.99
Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 104 PSPEG-AGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAP 155
P P+G AGE P DRG AP R G P G G P PG P P
Sbjct: 122 PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEP-GTPGNPGPPGPPGPPGPP 173
Score = 29.3 bits (64), Expect = 3.8
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 106 PEGAGESAPSADRGPATLARAPLRR--AGIGCPEGPVGFRRPRATPGTPEAP 155
P AG P G AP + AG GP G + PR PGTP +P
Sbjct: 350 PGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP 401
Score = 28.9 bits (63), Expect = 4.9
Identities = 25/88 (28%), Positives = 30/88 (34%), Gaps = 15/88 (17%)
Query: 89 LGSQAGRPSVSVSEAPSPEG----------AGESAPSADRGPATLARAPLRRAGIGCP-- 136
+G R + AP P+G G S P RGP P G P
Sbjct: 203 MGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK 262
Query: 137 ---EGPVGFRRPRATPGTPEAPRTHLHK 161
GP G + R PGTP P H+
Sbjct: 263 AGERGPPGPQGARGFPGTPGLPGVKGHR 290
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 35.8 bits (81), Expect = 0.040
Identities = 32/105 (30%), Positives = 34/105 (32%), Gaps = 24/105 (22%)
Query: 90 GSQAGRPSVSVSEAPSPEGA----GESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRP 145
G GR P P GA GE P G A AP R G P GP GF P
Sbjct: 711 GKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETG-PPGPAGFAGP 769
Query: 146 RATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 190
G P A G AG++ D G PG
Sbjct: 770 PGADGQPGAKGEQ-------------------GEAGQKGDAGAPG 795
Score = 31.2 bits (69), Expect = 0.99
Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 104 PSPEG-AGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAP 155
P P+G AGE P DRG AP R G P G G P PG P P
Sbjct: 53 PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEP-GTPGNPGPPGPPGPPGPP 104
Score = 29.3 bits (64), Expect = 3.8
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 106 PEGAGESAPSADRGPATLARAPLRR--AGIGCPEGPVGFRRPRATPGTPEAP 155
P AG P G AP + AG GP G + PR PGTP +P
Sbjct: 281 PGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP 332
Score = 28.9 bits (63), Expect = 4.9
Identities = 25/88 (28%), Positives = 30/88 (34%), Gaps = 15/88 (17%)
Query: 89 LGSQAGRPSVSVSEAPSPEG----------AGESAPSADRGPATLARAPLRRAGIGCP-- 136
+G R + AP P+G G S P RGP P G P
Sbjct: 134 MGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK 193
Query: 137 ---EGPVGFRRPRATPGTPEAPRTHLHK 161
GP G + R PGTP P H+
Sbjct: 194 AGERGPPGPQGARGFPGTPGLPGVKGHR 221
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 35.8 bits (81), Expect = 0.040
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 90 GSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATP 149
GSQ + S P P+G PS D GP P + G+ P+GP GF+ + T
Sbjct: 503 GSQGPKGSRGSPGKPGPQG-----PSGDPGPP----GPPGKEGLPGPQGPPGFQGLQGTV 553
Query: 150 GTPEAP 155
G P P
Sbjct: 554 GEPGVP 559
Score = 29.6 bits (65), Expect = 2.9
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 88 DLGSQAGRPSVSVSEAPSPEGA--GESAPSADRGPATLARAPLRRAGIGC--PEGPVGFR 143
D GSQ G P + ++ E G P+ +RGP A P R G G +GP G R
Sbjct: 453 DRGSQ-GPPGPTGNKGQKGEKGEPGPPGPAGERGPIGPAGPPGERGGKGSKGSQGPKGSR 511
Query: 144 RPRATPGTPEAP 155
PG P+ P
Sbjct: 512 GSPGKPG-PQGP 522
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 35.0 bits (79), Expect = 0.069
Identities = 42/136 (30%), Positives = 51/136 (37%), Gaps = 23/136 (16%)
Query: 23 EKGHTGR-GRRQLQASVGSAKKPSPCGELVGWLGRGERDVARARDVWVAR-----KPFPG 76
E G+ G GR+ Q G A P P G ++G GE+ R K FPG
Sbjct: 306 EPGYPGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEPGPKGFPG 365
Query: 77 CETAFHIWASMDLGSQAGRPSVSV-SEAPSPEGAGESAPSADRG-PATLARAPLRRAGIG 134
L Q G P + V +A +P GE DRG P T P R G+
Sbjct: 366 ------------LPGQPGPPGLPVPGQAGAPGFPGERGEKGDRGFPGTSLPGPSGRDGL- 412
Query: 135 CPEGPVGFRRPRATPG 150
GP G P PG
Sbjct: 413 --PGPPGSPGPPGQPG 426
Score = 30.4 bits (67), Expect = 1.7
Identities = 37/153 (24%), Positives = 50/153 (32%), Gaps = 29/153 (18%)
Query: 74 FPGCETAFHIWASMDLGSQAGRPSV--SVSEAPSPEGAGESAPSADRGPATLARAPLRRA 131
FPG S+ + G P + S P G D+G L P +
Sbjct: 1074 FPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKG 1133
Query: 132 GIGCP--EGPVGFRRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLP 189
G P GP G + PG+ P G AG + +PGLP
Sbjct: 1134 EAGLPGTPGPTGPAGQKGEPGSDGIP----------------------GSAGEKGEPGLP 1171
Query: 190 GTGWRHFFSLHGSSRESLSAEETGRVRTTHAPG 222
G G+ F G+ + S E G +PG
Sbjct: 1172 GRGFPGF---PGAKGDKGSKGEVGFPGLAGSPG 1201
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 34.7 bits (78), Expect = 0.090
Identities = 38/151 (25%), Positives = 57/151 (37%), Gaps = 17/151 (11%)
Query: 101 SEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATP------GTPEA 154
S+A S GAG + P P + +P+R +G G PEG +G R P G P
Sbjct: 848 SQAASAFGAGPTQP-----PHPVVPSPVRPSG-GRPEGFLGQRGRAVRPTRLSLEGLPSL 901
Query: 155 PRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRHFFSLHGSSRESLSAEETGR 214
P H + ++ ++++ FG G R P P + SS LSA
Sbjct: 902 PSMHEYPLPPEPKSPGEYINIDFGEPGARLSPPAP-----PLLASAASSSSLLSASSPAS 956
Query: 215 VRTTHAPGKLLKKASSSNCASSLQYPLNSSK 245
+ PG S + + +S K
Sbjct: 957 SLGSGTPGTSSDSRQRSPLSDYMNLDFSSPK 987
>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
Length = 1062
Score = 34.7 bits (78), Expect = 0.090
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 70 ARKPFPGCETAFHIWASMDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLR 129
A++P G +T L S + RPS S P P G P R P + A AP+
Sbjct: 412 AQRPLRGAKT---------LSSPSNRPSGETS-VPPPPAVGRMYPP--RSPKSAAPAPIS 459
Query: 130 RAGIGCPEGPVGFRRPRATPGTP 152
+ CPE P+G P ++ P
Sbjct: 460 AS---CPEPPIGSAVPTSSASIP 479
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 34.7 bits (78), Expect = 0.090
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 70 ARKPFPGCETAFHIWASMDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLR 129
A++P G +T L S + RPS S P P G P R P + A AP+
Sbjct: 412 AQRPLRGAKT---------LSSPSNRPSGETS-VPPPPAVGRMYPP--RSPKSAAPAPIS 459
Query: 130 RAGIGCPEGPVGFRRPRATPGTP 152
+ CPE P+G P ++ P
Sbjct: 460 AS---CPEPPIGSAVPTSSASIP 479
>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
Length = 1097
Score = 34.7 bits (78), Expect = 0.090
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 70 ARKPFPGCETAFHIWASMDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLR 129
A++P G +T L S + RPS S P P G P R P + A AP+
Sbjct: 412 AQRPLRGAKT---------LSSPSNRPSGETS-VPPPPAVGRMYPP--RSPKSAAPAPIS 459
Query: 130 RAGIGCPEGPVGFRRPRATPGTP 152
+ CPE P+G P ++ P
Sbjct: 460 AS---CPEPPIGSAVPTSSASIP 479
>gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]
Length = 1075
Score = 34.7 bits (78), Expect = 0.090
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 70 ARKPFPGCETAFHIWASMDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLR 129
A++P G +T L S + RPS S P P G P R P + A AP+
Sbjct: 412 AQRPLRGAKT---------LSSPSNRPSGETS-VPPPPAVGRMYPP--RSPKSAAPAPIS 459
Query: 130 RAGIGCPEGPVGFRRPRATPGTP 152
+ CPE P+G P ++ P
Sbjct: 460 AS---CPEPPIGSAVPTSSASIP 479
>gi|27262651 ataxin 2 related protein isoform D [Homo sapiens]
Length = 1044
Score = 34.7 bits (78), Expect = 0.090
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 70 ARKPFPGCETAFHIWASMDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLR 129
A++P G +T L S + RPS S P P G P R P + A AP+
Sbjct: 412 AQRPLRGAKT---------LSSPSNRPSGETS-VPPPPAVGRMYPP--RSPKSAAPAPIS 459
Query: 130 RAGIGCPEGPVGFRRPRATPGTP 152
+ CPE P+G P ++ P
Sbjct: 460 AS---CPEPPIGSAVPTSSASIP 479
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 34.3 bits (77), Expect = 0.12
Identities = 47/177 (26%), Positives = 62/177 (35%), Gaps = 43/177 (24%)
Query: 24 KGHTG-RGRRQLQASVGSAKKPSPCGELVGWLG-RGERDVARARDVWVARKPFPGCETAF 81
KGHTG G + L G P P G+ G+ G RGE + + ET
Sbjct: 869 KGHTGLMGPQGLPGENGPVGPPGPPGQ-PGFPGLRGESPSMETLRRLIQEELGKQLETRL 927
Query: 82 -HIWASMD---LGSQAGRPSVSVSEAPSPEGA----GESAPSADRGPATLARAPLRRAGI 133
++ A M + S GRP P P G G + P + G + G+
Sbjct: 928 AYLLAQMPPAYMKSSQGRPG-----PPGPPGKDGLPGRAGPMGEPGRPG-------QGGL 975
Query: 134 GCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 190
P GP+G + R G P AP G G G PG+PG
Sbjct: 976 EGPSGPIGPKGERGAKGDPGAP--------------------GVGLRGEMGPPGIPG 1012
Score = 29.3 bits (64), Expect = 3.8
Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Query: 90 GSQAGRPSVSVSEAPSPEGA-GESAPSADRGPATLAR--APLRRAGIGCPEGPVGFRRPR 146
G + + + +P P G G+ GP + P R G P GP+G + R
Sbjct: 431 GERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLP-GPLGTKGDR 489
Query: 147 ATPGTPEAPRTHLHKAVGVREAWQHHLSVG-FGCAGRRQDPGLPG 190
PG P +P + +GV G G G R PG PG
Sbjct: 490 GAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPG 534
Score = 28.1 bits (61), Expect = 8.4
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 94 GRPSVSVSEAPSPEGAGESAPSADRGPATLARAP--LRRAGIGCPEGPVGFRRPRATPGT 151
G P + P P GE P ++G L P R G P+GP G + G
Sbjct: 331 GLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGA 390
Query: 152 PEAPRTHLHKAVGVREAWQHHLSVG-FGCAGRRQDPGLPGT 191
AP A G A H + G G G PGL GT
Sbjct: 391 HGAP-----GAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGT 426
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 34.3 bits (77), Expect = 0.12
Identities = 50/180 (27%), Positives = 61/180 (33%), Gaps = 52/180 (28%)
Query: 29 RGRRQLQASVGSAKKPSPCGELVGWLGRGERDVARARDVWVA-----RKPFPGCETAFHI 83
R R AS G ++ PSP G AR R W+ R P P
Sbjct: 22 RARGPAIASAGYSRPPSPVGR------------ARRRGTWLRVLRGPRAPSPA------- 62
Query: 84 WASMDLGSQAGRPSVSVSEAPSPEGAGESAPS-ADRGPATLARAPLRRAG--IGCPEGPV 140
P++ P E + P+ A RGP P R AG G E
Sbjct: 63 ------------PALPARARPPRENRKRAVPARAARGP------PKRPAGGQTGGVEAAS 104
Query: 141 GF-----RRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRH 195
G RRPR P P PR + + EA G +GRR D G +GW H
Sbjct: 105 GEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRG--DSGWSH 162
Score = 30.0 bits (66), Expect = 2.2
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 89 LGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRAT 148
LG Q G P + P+ AG S P P+ + RA R + GP A
Sbjct: 11 LGGQWGTPLYPRARGPAIASAGYSRP-----PSPVGRARRRGTWLRVLRGPRAPSPAPAL 65
Query: 149 PGTPEAPRTHLHKAVGVREA 168
P PR + +AV R A
Sbjct: 66 PARARPPRENRKRAVPARAA 85
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 34.3 bits (77), Expect = 0.12
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 30/113 (26%)
Query: 92 QAGRPSVSVSEAP----SPEGAGESAPSADRGPATLARAP--LRRAGIGCP-----EGPV 140
+AG P S+ P +P G P +RG + +P + GIG P +GP
Sbjct: 578 EAGPPGKSLPGEPGLDGNPGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPA 637
Query: 141 G---FRRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 190
G + PR PG P P T + G GR PGLPG
Sbjct: 638 GEPGIQGPRGLPGLPGTPGTPGND----------------GVPGRDGKPGLPG 674
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 34.3 bits (77), Expect = 0.12
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 21/88 (23%)
Query: 104 PSPEGA-GESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKA 162
P P G G+ P RGP + AP +AG GP GFR P+ G P T
Sbjct: 237 PGPLGPPGDRGPIGFRGPPGIPGAP-GKAGDRGERGPEGFRGPKGDLGRPGPKGTP---- 291
Query: 163 VGVREAWQHHLSVGFGCAGRRQDPGLPG 190
G AG +PG+PG
Sbjct: 292 ---------------GVAGPSGEPGMPG 304
Score = 30.4 bits (67), Expect = 1.7
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 104 PSPEGA-GESAPSADRGPATLAR----APLRRAGIGCPEGPVGFRRPRATPGTPEAP 155
P P+GA GE GP L P AG+ P G +G R P G P P
Sbjct: 94 PGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLP 150
Score = 28.5 bits (62), Expect = 6.4
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 104 PSPEG-AGESAPSADRGPATLARAPLRRAGIGCP--EGPVGFRRPRATPGTP 152
P P G AG +GP L P +G P GP+GFR P PG P
Sbjct: 213 PGPPGPAGLPGSVGLQGPRGLRGLP---GPLGPPGDRGPIGFRGPPGIPGAP 261
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 34.3 bits (77), Expect = 0.12
Identities = 22/68 (32%), Positives = 27/68 (39%)
Query: 90 GSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATP 149
G A P + PSP+G +P +G + AP RAG P G RR A
Sbjct: 504 GPGAWAPPLDSPGTPSPDGPWCFSPEGAQGAGGVLFAPFGRAGAPGPGGGSDLRRREAAR 563
Query: 150 GTPEAPRT 157
P RT
Sbjct: 564 AEPRDART 571
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 34.3 bits (77), Expect = 0.12
Identities = 47/177 (26%), Positives = 62/177 (35%), Gaps = 43/177 (24%)
Query: 24 KGHTG-RGRRQLQASVGSAKKPSPCGELVGWLG-RGERDVARARDVWVARKPFPGCETAF 81
KGHTG G + L G P P G+ G+ G RGE + + ET
Sbjct: 1422 KGHTGLMGPQGLPGENGPVGPPGPPGQ-PGFPGLRGESPSMETLRRLIQEELGKQLETRL 1480
Query: 82 -HIWASMD---LGSQAGRPSVSVSEAPSPEGA----GESAPSADRGPATLARAPLRRAGI 133
++ A M + S GRP P P G G + P + G + G+
Sbjct: 1481 AYLLAQMPPAYMKSSQGRPG-----PPGPPGKDGLPGRAGPMGEPGRPG-------QGGL 1528
Query: 134 GCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 190
P GP+G + R G P AP G G G PG+PG
Sbjct: 1529 EGPSGPIGPKGERGAKGDPGAP--------------------GVGLRGEMGPPGIPG 1565
Score = 28.1 bits (61), Expect = 8.4
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 94 GRPSVSVSEAPSPEGAGESAPSADRGPATLARAP--LRRAGIGCPEGPVGFRRPRATPGT 151
G P + P P GE P ++G L P R G P+GP G + G
Sbjct: 849 GLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGA 908
Query: 152 PEAPRTHLHKAVGVREAWQHHLSVG-FGCAGRRQDPGLPGT 191
AP A G A H + G G G PGL GT
Sbjct: 909 HGAP-----GAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGT 944
>gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo
sapiens]
Length = 606
Score = 33.9 bits (76), Expect = 0.15
Identities = 38/133 (28%), Positives = 50/133 (37%), Gaps = 16/133 (12%)
Query: 28 GRGRRQLQASVGSAKKPSPCGELVGWLGRGERDVARARDVWVARKPFPGCETAFHIWASM 87
GRG + S+G P G+ GER V + FPG + + S
Sbjct: 479 GRGPKGDPGSLGPLGPQGPQGQPGEAGPVGERGP-------VGPRGFPGLKGSK---GSF 528
Query: 88 DLGSQAGRPSVSVSEAP-SPEGA----GESAPSADRGPATLARAPLRRAGIGCPEGPVGF 142
G G+P P PEG G S P G A +P +R +G P+G G
Sbjct: 529 GTGGPRGQPGPKGDIGPPGPEGPPGSPGPSGPQGKPGIAGKTGSPGQRGAMG-PKGEPGI 587
Query: 143 RRPRATPGTPEAP 155
+ P PG P P
Sbjct: 588 QGPPGLPGPPGPP 600
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,744,198
Number of Sequences: 37866
Number of extensions: 715202
Number of successful extensions: 3109
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 190
Number of HSP's that attempted gapping in prelim test: 2615
Number of HSP's gapped (non-prelim): 666
length of query: 269
length of database: 18,247,518
effective HSP length: 101
effective length of query: 168
effective length of database: 14,423,052
effective search space: 2423072736
effective search space used: 2423072736
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.