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Search of human proteins with 239582757
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239582757 Acr formation associated factor isoform 1 [Homo
sapiens]
(294 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239582757 Acr formation associated factor isoform 1 [Homo sap... 585 e-167
gi|239582759 Acr formation associated factor isoform 2 [Homo sap... 510 e-145
gi|24430146 nucleoporin 153kDa [Homo sapiens] 31 1.1
gi|157311649 neogenin homolog 1 [Homo sapiens] 31 1.1
gi|13540602 TGF-beta induced apoptosis protein 12 [Homo sapiens] 31 1.1
gi|91982772 mucin 17 [Homo sapiens] 31 1.5
gi|34878904 synaptonemal complex protein 1 [Homo sapiens] 30 1.9
gi|205360925 mucin 15 isoform c [Homo sapiens] 30 1.9
gi|20357504 dystonin isoform 1eB precursor [Homo sapiens] 30 2.5
gi|58530876 melanoma antigen family C, 1 [Homo sapiens] 29 4.3
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 29 4.3
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 29 4.3
gi|56605998 EP300 interacting inhibitor of differentiation 3 [Ho... 29 4.3
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 29 5.7
gi|6005948 WW domain-containing binding protein 4 [Homo sapiens] 29 5.7
gi|126116589 fibrocystin L [Homo sapiens] 29 5.7
gi|205360923 mucin 15 isoform a [Homo sapiens] 28 7.4
gi|40255098 mucin 15 isoform b [Homo sapiens] 28 7.4
gi|38490688 immunoglobulin superfamily, member 10 [Homo sapiens] 28 7.4
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 28 9.6
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 28 9.6
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 28 9.6
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 28 9.6
gi|239757995 PREDICTED: similar to hCG1747327, partial [Homo sap... 28 9.6
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 28 9.6
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 28 9.6
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1... 28 9.6
gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens] 28 9.6
gi|31377639 sialic acid binding Ig-like lectin 10 [Homo sapiens] 28 9.6
gi|58082089 hypothetical protein LOC161394 [Homo sapiens] 28 9.6
>gi|239582757 Acr formation associated factor isoform 1 [Homo
sapiens]
Length = 294
Score = 585 bits (1508), Expect = e-167
Identities = 294/294 (100%), Positives = 294/294 (100%)
Query: 1 MNFILFIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGN 60
MNFILFIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGN
Sbjct: 1 MNFILFIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGN 60
Query: 61 YYKDIKQYVFTTQNPNGTESEISVRATTDLNFALKNDKTVNATTYEKSTIEEETTTSEPS 120
YYKDIKQYVFTTQNPNGTESEISVRATTDLNFALKNDKTVNATTYEKSTIEEETTTSEPS
Sbjct: 61 YYKDIKQYVFTTQNPNGTESEISVRATTDLNFALKNDKTVNATTYEKSTIEEETTTSEPS 120
Query: 121 HKNIQRSTPNVPAFWTMLAKAINGTAVVMDDKDQLFHPIPESDVNATQGENQPDLEDLKI 180
HKNIQRSTPNVPAFWTMLAKAINGTAVVMDDKDQLFHPIPESDVNATQGENQPDLEDLKI
Sbjct: 121 HKNIQRSTPNVPAFWTMLAKAINGTAVVMDDKDQLFHPIPESDVNATQGENQPDLEDLKI 180
Query: 181 KIMLGISLMTLLLFVVLLAFCSATLYKLRHLSYKSCESQYSVNPELATMSYFHPSEGVSD 240
KIMLGISLMTLLLFVVLLAFCSATLYKLRHLSYKSCESQYSVNPELATMSYFHPSEGVSD
Sbjct: 181 KIMLGISLMTLLLFVVLLAFCSATLYKLRHLSYKSCESQYSVNPELATMSYFHPSEGVSD 240
Query: 241 TSFSKSAESSTFLGTTSSDMRRSGTRTSESKIMTDIISIGSDNEMHENDESVTR 294
TSFSKSAESSTFLGTTSSDMRRSGTRTSESKIMTDIISIGSDNEMHENDESVTR
Sbjct: 241 TSFSKSAESSTFLGTTSSDMRRSGTRTSESKIMTDIISIGSDNEMHENDESVTR 294
>gi|239582759 Acr formation associated factor isoform 2 [Homo
sapiens]
Length = 265
Score = 510 bits (1314), Expect = e-145
Identities = 264/294 (89%), Positives = 264/294 (89%), Gaps = 29/294 (9%)
Query: 1 MNFILFIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGN 60
MNFILFIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGN
Sbjct: 1 MNFILFIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGN 60
Query: 61 YYKDIKQYVFTTQNPNGTESEISVRATTDLNFALKNDKTVNATTYEKSTIEEETTTSEPS 120
YYKDIKQYVFTTQNPNGTESEISVRATTDLNFALKN
Sbjct: 61 YYKDIKQYVFTTQNPNGTESEISVRATTDLNFALKNG----------------------- 97
Query: 121 HKNIQRSTPNVPAFWTMLAKAINGTAVVMDDKDQLFHPIPESDVNATQGENQPDLEDLKI 180
STPNVPAFWTMLAKAINGTAVVMDDKDQLFHPIPESDVNATQGENQPDLEDLKI
Sbjct: 98 ------STPNVPAFWTMLAKAINGTAVVMDDKDQLFHPIPESDVNATQGENQPDLEDLKI 151
Query: 181 KIMLGISLMTLLLFVVLLAFCSATLYKLRHLSYKSCESQYSVNPELATMSYFHPSEGVSD 240
KIMLGISLMTLLLFVVLLAFCSATLYKLRHLSYKSCESQYSVNPELATMSYFHPSEGVSD
Sbjct: 152 KIMLGISLMTLLLFVVLLAFCSATLYKLRHLSYKSCESQYSVNPELATMSYFHPSEGVSD 211
Query: 241 TSFSKSAESSTFLGTTSSDMRRSGTRTSESKIMTDIISIGSDNEMHENDESVTR 294
TSFSKSAESSTFLGTTSSDMRRSGTRTSESKIMTDIISIGSDNEMHENDESVTR
Sbjct: 212 TSFSKSAESSTFLGTTSSDMRRSGTRTSESKIMTDIISIGSDNEMHENDESVTR 265
>gi|24430146 nucleoporin 153kDa [Homo sapiens]
Length = 1475
Score = 31.2 bits (69), Expect = 1.1
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 218 SQYSVNPELATMSYFHPSEGVSDTSFSKSAESSTFLGTTSSDMRRSGTRTSESKIMTDII 277
S S NP +AT + S VS ++F +AESST S + T +S +T +
Sbjct: 1215 STSSSNPPVATFVFGQSSNPVSSSAFGNTAESSTSQSLLFSQDSKLATTSSTGTAVTPFV 1274
>gi|157311649 neogenin homolog 1 [Homo sapiens]
Length = 1461
Score = 31.2 bits (69), Expect = 1.1
Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 8/200 (4%)
Query: 23 TIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGNYYKDIKQYVFTTQNPNGTESEI 82
T E +P P + V +E K + N+ P +E NG K ++ + + N +
Sbjct: 949 TFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANG---KITGYIIYYSTDVNAEIHDW 1005
Query: 83 SVRATTDLNFALKNDKTVNATTYEKSTIEEETTTSEPSHKNIQRSTPNVPAFWTM---LA 139
+ + + T Y + P + +Q TP + M A
Sbjct: 1006 VIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKADSSDKMPNDQA 1065
Query: 140 KAINGTAVVMDDKDQLFHPIPESDVNATQGENQPDLE-DLKIKIMLGISLMTLLLFVVLL 198
G + D + P P S N+ G L+ ++ + I++ + ++T+++ V++
Sbjct: 1066 SGSGGKGSRLPDLGSDYKP-PMSGSNSPHGSPTSPLDSNMLLVIIVSVGVITIVVVVIIA 1124
Query: 199 AFCSATLYKLRHLSYKSCES 218
FC+ + +C+S
Sbjct: 1125 VFCTRRTTSHQKKKRAACKS 1144
>gi|13540602 TGF-beta induced apoptosis protein 12 [Homo sapiens]
Length = 543
Score = 31.2 bits (69), Expect = 1.1
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Query: 22 PTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPAN 55
PT+EAL L ED N +E +NED P+++P++
Sbjct: 479 PTLEAL-----LPEDCNPEEPENEDFHPSWSPSS 507
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 30.8 bits (68), Expect = 1.5
Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 37 VNKQEEKNEDHTPNYAPANEKNGNYYKDI---KQYVFTTQNPNGTESEISVRATTD---- 89
+N+Q ++ H + AN G ++ + Y+ + NP T E SV + T
Sbjct: 48 LNRQCQQLSQHVRTGSAANTATGTTSTNVVEPRMYLSCSTNPEMTSIESSVTSDTPGVSS 107
Query: 90 -----LNFALKNDKTVNATTYEKSTIEEETTTSEPSHKNIQRSTPNVPAFWTMLA 139
++ T ++TT S+ E+ ++ + P ++ STP+ + + +A
Sbjct: 108 TRMTPTESRTTSESTSDSTTLFPSSTEDTSSPTTPEGTDVPMSTPSEESISSTMA 162
>gi|34878904 synaptonemal complex protein 1 [Homo sapiens]
Length = 976
Score = 30.4 bits (67), Expect = 1.9
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 35 EDVNKQEEKNEDHTPNYAPANEKNGNYYKDIKQYVFTTQNPNGTESEISVRATTDLNFAL 94
+ VN+ EEK + + N + EK + K+++ + Q T+ + DL A
Sbjct: 294 DKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALE----EDLQIA- 348
Query: 95 KNDKTVNATTYEKSTIEEETTTSEPSH 121
KT+ T EK T EE+ + +H
Sbjct: 349 --TKTICQLTEEKETQMEESNKARAAH 373
>gi|205360925 mucin 15 isoform c [Homo sapiens]
Length = 311
Score = 30.4 bits (67), Expect = 1.9
Identities = 43/179 (24%), Positives = 68/179 (37%), Gaps = 15/179 (8%)
Query: 18 STLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGNYYKDIKQYVFTTQNPNG 77
ST P I + + +P N + ++ PN PA + + V T N +
Sbjct: 134 STSPPLIHSFVSKVPWNAPIADEDLLPISAHPNATPALSSENFTWSLVNDTVKTPDNSSI 193
Query: 78 TESEISVRAT----TDLNFALKNDKTVNATTYEKSTIEEETTTSEPSHK--NIQRSTPNV 131
T S +S T T L T N+ ++ T +E TT +P+ K N + PN
Sbjct: 194 TVSILSSEPTSPSVTPLIVEPSGWLTTNSDSFTGFTPYQEKTTLQPTLKFTNNSKLFPNT 253
Query: 132 --PAFWTMLAKAINGTAVVMDDKDQLFHP------IPESDVNATQGENQPDLEDLKIKI 182
P L A V + ++P +PES+ NA G D+ L+ +
Sbjct: 254 SDPQKVLRLDNAPEPYDVSFGN-SSYYNPTLNDSAMPESEENARDGIPMDDIPPLRTSV 311
>gi|20357504 dystonin isoform 1eB precursor [Homo sapiens]
Length = 3062
Score = 30.0 bits (66), Expect = 2.5
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 31/180 (17%)
Query: 36 DVNKQEEKNEDHTPNYAPA-NEKNG-----NYYKDIK-QYVFTTQNPNGTESEISVRATT 88
D N Q++ ++D ++NG N +D+ Q + N N E+E
Sbjct: 2263 DSNDQDDDDDDGIDEEGGGIRDENGKPRCQNVAEDMDIQLCASILNENSDENE------- 2315
Query: 89 DLNFALKNDKTVNATTYEKSTIEEETTTSEPSHKNIQRSTPNVPAFWTMLA-----KAIN 143
++N + DK + ++ EK + PS N+ N+P + T +A +N
Sbjct: 2316 NINTMILLDKMHSCSSLEKQQRVNVVQLASPSENNLVTEKSNLPEYTTEIAGKSKENLLN 2375
Query: 144 GTAVVMD---------DKDQLFHPIPESDVN---ATQGENQPDLEDLKIKIMLGISLMTL 191
V+ D + ++ F P S N ++ E DL + K+K++ G L L
Sbjct: 2376 HEMVLKDVLPPIIKDTESEKTFGPASISHDNNNISSTSELGTDLANTKVKLIQGSELPEL 2435
>gi|58530876 melanoma antigen family C, 1 [Homo sapiens]
Length = 1142
Score = 29.3 bits (64), Expect = 4.3
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 199 AFCSATLYKLRHLSYKSCESQYSVNPELATMSYFHPSEGVSDTSFSKSAESSTFLGTTSS 258
+F S TL L S++S +S + S + +S S+S+ S+F +TSS
Sbjct: 781 SFFSYTLASLLQSSHESPQSPPEGPAQSPLQSPVSSFPSSTSSSLSQSSPVSSFPSSTSS 840
Query: 259 DMRRSGTRTSESKIMTDIISIGSDNEM 285
+ +S + ES + + +IS S +
Sbjct: 841 SLSKS---SPESPLQSPVISFSSSTSL 864
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 29.3 bits (64), Expect = 4.3
Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 28/219 (12%)
Query: 78 TESEISVRATTDLNFALKNDK----------TVNATTYEKSTIEEETTTSEPSHKNIQRS 127
+E+E S ++ F ++ DK V+A EK + E+E SEP + + +
Sbjct: 417 SENEASKELEPEMEFEIEPDKECKSLSPGKENVSALDMEKESEEKEEKESEPQPEPVAQP 476
Query: 128 TPNVPAFWTMLAKA---INGTAVVMDDKDQLFHPIPESDVNATQGENQPDLEDLKIKIML 184
P + +++ + + L P V QG P+ +D ++
Sbjct: 477 QPQSQPQLQLQSQSQPVLQSQPPSQPEDLSLAVLQPTPQVTQEQGHLLPERKDFPVE--- 533
Query: 185 GISLMTLLLFVVLLAF---------CSATLYKLRHLSYKS---CESQYSVNPELATMSYF 232
+ L + + VL S + + R+ + KS S S + + S
Sbjct: 534 SVKLTEVPVEPVLTVHPESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSG 593
Query: 233 HPSEGVSDTSFSKSAESSTFLGTTSSDMRRSGTRTSESK 271
S S +S S S+ SS+ G++S D S + +SES+
Sbjct: 594 SSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESR 632
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 29.3 bits (64), Expect = 4.3
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 33 LNEDVNKQEEKNEDHTPNYAPANEK--NGNYYKDIKQYVFTTQNPNGTESE 81
L ++ K EEK E PN P EK + N ++ VFT Q+ N +E E
Sbjct: 589 LEKEREKLEEKIEPREPNLEPMVEKQESENSCNKEEEPVFTRQDSNRSEKE 639
>gi|56605998 EP300 interacting inhibitor of differentiation 3 [Homo
sapiens]
Length = 333
Score = 29.3 bits (64), Expect = 4.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 6 FIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKN 58
F F+ G F L+ S KP +E V + E+ N + + +Y A EKN
Sbjct: 168 FHFVFGSFKLERSAPKPRLEHQKKVRKMEENGNMPTKLQKLDLSSYPEATEKN 220
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 28.9 bits (63), Expect = 5.7
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 105 YEKSTIEEETTTSEPSHKNIQRSTPNVPAFWTMLAKAINGTAVVMDDKDQLFHPIPESDV 164
Y S ++E + PS +N+Q + + M G A + +DQL P P + +
Sbjct: 665 YSHSQMQEHVSLRSPSIRNVQELKEAIKSLQWMAGGTFTGEA-LQYTRDQLLPPSPNNRI 723
Query: 165 NAT----QGENQPDLEDLKIKIMLGISLMTL 191
+ + Q D L + GI ++++
Sbjct: 724 ALVITDGRSDTQRDTTPLNVLCSPGIQVVSV 754
>gi|6005948 WW domain-containing binding protein 4 [Homo sapiens]
Length = 376
Score = 28.9 bits (63), Expect = 5.7
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 15 LKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPA--------NEKNGNYYKDIK 66
L+S L+P+I + + +P N+Q+EK E P+ + +YY D+
Sbjct: 85 LESEILEPSITPVTSTIPPTSTSNQQKEKKEKKKRKKDPSKGRWVEGITSEGYHYYYDLI 144
Query: 67 QYVFTTQNPNGTESEISVRA 86
+ P G + ++ A
Sbjct: 145 SGASQWEKPEGFQGDLKKTA 164
>gi|126116589 fibrocystin L [Homo sapiens]
Length = 4243
Score = 28.9 bits (63), Expect = 5.7
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 237 GVSDTSFSKSAESSTFLGTTSSDMRRSGTRTSESKIMTDIIS 278
GV +FS AES + G++SS ++ T + ++IMT +IS
Sbjct: 4176 GVESRTFSLLAESVSSSGSSSSSNSKASTVGTYAQIMTVVIS 4217
>gi|205360923 mucin 15 isoform a [Homo sapiens]
Length = 361
Score = 28.5 bits (62), Expect = 7.4
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
Query: 18 STLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGNYYKDIKQYVFTTQNPNG 77
ST P I + + +P N + ++ PN PA + + V T N +
Sbjct: 134 STSPPLIHSFVSKVPWNAPIADEDLLPISAHPNATPALSSENFTWSLVNDTVKTPDNSSI 193
Query: 78 TESEISVRAT----TDLNFALKNDKTVNATTYEKSTIEEETTTSEPSHK--NIQRSTPN 130
T S +S T T L T N+ ++ T +E TT +P+ K N + PN
Sbjct: 194 TVSILSSEPTSPSVTPLIVEPSGWLTTNSDSFTGFTPYQEKTTLQPTLKFTNNSKLFPN 252
>gi|40255098 mucin 15 isoform b [Homo sapiens]
Length = 334
Score = 28.5 bits (62), Expect = 7.4
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
Query: 18 STLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGNYYKDIKQYVFTTQNPNG 77
ST P I + + +P N + ++ PN PA + + V T N +
Sbjct: 107 STSPPLIHSFVSKVPWNAPIADEDLLPISAHPNATPALSSENFTWSLVNDTVKTPDNSSI 166
Query: 78 TESEISVRAT----TDLNFALKNDKTVNATTYEKSTIEEETTTSEPSHK--NIQRSTPN 130
T S +S T T L T N+ ++ T +E TT +P+ K N + PN
Sbjct: 167 TVSILSSEPTSPSVTPLIVEPSGWLTTNSDSFTGFTPYQEKTTLQPTLKFTNNSKLFPN 225
>gi|38490688 immunoglobulin superfamily, member 10 [Homo sapiens]
Length = 2623
Score = 28.5 bits (62), Expect = 7.4
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 73 QNPNGTESEISVRATTDLNFALKNDKTVNATTYE-KSTIEEETTTSEPSHKN 123
+N G S IS + T LN ++ A+T KSTI ETT S SH++
Sbjct: 1399 ENTTGISSTISFHSRT-LNLTDVIEELAQASTQTLKSTIASETTLSSKSHQS 1449
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 28.1 bits (61), Expect = 9.6
Identities = 31/121 (25%), Positives = 43/121 (35%), Gaps = 16/121 (13%)
Query: 14 SLKSSTLKPTIEALPNVLPLNEDVNKQEEK--NEDHTPNYAPANEKNGNYYKDIKQYVFT 71
S K +T KP I P+ LP N D +K+ N++ T N D
Sbjct: 115 SPKITTAKP-INPRPS-LPPNSDTSKETSLTVNKETTVETKETTTTNKQTSTD------- 165
Query: 72 TQNPNGTESEISVRATTDLNFALKNDKTVNATTYEKSTIEEETTTSEPSHKNIQRSTPNV 131
G E S + T + D + K T + ETTT P+ + TP
Sbjct: 166 -----GKEKTTSAKETQSIEKTSAKDLAPTSKVLAKPTPKAETTTKGPALTTPKEPTPTT 220
Query: 132 P 132
P
Sbjct: 221 P 221
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 28.1 bits (61), Expect = 9.6
Identities = 31/121 (25%), Positives = 43/121 (35%), Gaps = 16/121 (13%)
Query: 14 SLKSSTLKPTIEALPNVLPLNEDVNKQEEK--NEDHTPNYAPANEKNGNYYKDIKQYVFT 71
S K +T KP I P+ LP N D +K+ N++ T N D
Sbjct: 156 SPKITTAKP-INPRPS-LPPNSDTSKETSLTVNKETTVETKETTTTNKQTSTD------- 206
Query: 72 TQNPNGTESEISVRATTDLNFALKNDKTVNATTYEKSTIEEETTTSEPSHKNIQRSTPNV 131
G E S + T + D + K T + ETTT P+ + TP
Sbjct: 207 -----GKEKTTSAKETQSIEKTSAKDLAPTSKVLAKPTPKAETTTKGPALTTPKEPTPTT 261
Query: 132 P 132
P
Sbjct: 262 P 262
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 28.1 bits (61), Expect = 9.6
Identities = 31/121 (25%), Positives = 43/121 (35%), Gaps = 16/121 (13%)
Query: 14 SLKSSTLKPTIEALPNVLPLNEDVNKQEEK--NEDHTPNYAPANEKNGNYYKDIKQYVFT 71
S K +T KP I P+ LP N D +K+ N++ T N D
Sbjct: 208 SPKITTAKP-INPRPS-LPPNSDTSKETSLTVNKETTVETKETTTTNKQTSTD------- 258
Query: 72 TQNPNGTESEISVRATTDLNFALKNDKTVNATTYEKSTIEEETTTSEPSHKNIQRSTPNV 131
G E S + T + D + K T + ETTT P+ + TP
Sbjct: 259 -----GKEKTTSAKETQSIEKTSAKDLAPTSKVLAKPTPKAETTTKGPALTTPKEPTPTT 313
Query: 132 P 132
P
Sbjct: 314 P 314
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 28.1 bits (61), Expect = 9.6
Identities = 31/121 (25%), Positives = 43/121 (35%), Gaps = 16/121 (13%)
Query: 14 SLKSSTLKPTIEALPNVLPLNEDVNKQEEK--NEDHTPNYAPANEKNGNYYKDIKQYVFT 71
S K +T KP I P+ LP N D +K+ N++ T N D
Sbjct: 249 SPKITTAKP-INPRPS-LPPNSDTSKETSLTVNKETTVETKETTTTNKQTSTD------- 299
Query: 72 TQNPNGTESEISVRATTDLNFALKNDKTVNATTYEKSTIEEETTTSEPSHKNIQRSTPNV 131
G E S + T + D + K T + ETTT P+ + TP
Sbjct: 300 -----GKEKTTSAKETQSIEKTSAKDLAPTSKVLAKPTPKAETTTKGPALTTPKEPTPTT 354
Query: 132 P 132
P
Sbjct: 355 P 355
>gi|239757995 PREDICTED: similar to hCG1747327, partial [Homo
sapiens]
Length = 1064
Score = 28.1 bits (61), Expect = 9.6
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 28/101 (27%)
Query: 70 FTTQNPNGTESEIS-----------------VRATTDL--------NFALKNDKTVNATT 104
FTT NP+ ++IS + A TDL + A+ T +A +
Sbjct: 669 FTTMNPSSLSTDISTTTLKNITQPSVGSTGFLTAATDLTSTFTVSSSSAMSTSVTPSAPS 728
Query: 105 YEK---STIEEETTTSEPSHKNIQRSTPNVPAFWTMLAKAI 142
+ ST+ TTT+ P+ + ST N P + + +
Sbjct: 729 IQNKEISTLVSTTTTTSPTERMTLTSTENTPTSYILTTSPV 769
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 28.1 bits (61), Expect = 9.6
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 70 FTTQNPNGTESEISVRATTDLNFALKNDKTVNATTYEKSTIEEETTTSEPSHKNIQRST 128
FTT T + IS+ +T+ ++ ++ + T +T ST T+TS + + ST
Sbjct: 150 FTTSTAT-TSTSISITSTSSISSSITSTSTSTTSTSSNSTTSTVTSTSTSTSTSTSTST 207
Score = 28.1 bits (61), Expect = 9.6
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 71 TTQNPNGTESEISVRAT-TDLNFALKNDKTVNATTYEKSTIEEETTTSEPSHKNIQRSTP 129
T+ + N T S ++ +T T + + T +TT +T T+TS + +I++ TP
Sbjct: 181 TSTSSNSTTSTVTSTSTSTSTSTSTSTSSTFTSTTSTSTTSTSTTSTSTSATSSIRKLTP 240
Query: 130 N 130
+
Sbjct: 241 H 241
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 28.1 bits (61), Expect = 9.6
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 70 FTTQNPNGTESEISVRATTDLNFALKNDKTVNATTYEKSTIEEETTTSEPSHKNIQRST 128
FTT T + IS+ +T+ ++ ++ + T +T ST T+TS + + ST
Sbjct: 150 FTTSTAT-TSTSISITSTSSISSSITSTSTSTTSTSSNSTTSTVTSTSTSTSTSTSTST 207
Score = 28.1 bits (61), Expect = 9.6
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 71 TTQNPNGTESEISVRAT-TDLNFALKNDKTVNATTYEKSTIEEETTTSEPSHKNIQRSTP 129
T+ + N T S ++ +T T + + T +TT +T T+TS + +I++ TP
Sbjct: 181 TSTSSNSTTSTVTSTSTSTSTSTSTSTSSTFTSTTSTSTTSTSTTSTSTSATSSIRKLTP 240
Query: 130 N 130
+
Sbjct: 241 H 241
>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
[Homo sapiens]
Length = 651
Score = 28.1 bits (61), Expect = 9.6
Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 34 NEDVNKQEEKNEDHTPNYAPANEKNGNYYKDIKQYVFTTQNPNGTESEISVRATTDLNFA 93
+ D ++ K+ N K + KD+K+ +T +G + D
Sbjct: 295 SSDAESEDSKDAKKDSKKVKKNVKKDDKKKDVKKDTESTDAESGDSKDERKDTKKDKKKL 354
Query: 94 LKNDKTVNATTYEKSTIEE--ETTTSEPSHKNIQRSTPN 130
K+DK + Y +ST E + + +N+++++ N
Sbjct: 355 KKDDKKKDTKKYPESTDTESGDAKDARNDSRNLKKASKN 393
Score = 28.1 bits (61), Expect = 9.6
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 32 PLNEDVNKQEEKNEDHTPNYAPANEKNGNYYKDIKQYVFTTQNPNGTESEISVRATTDLN 91
P + D + K+ + KN + KD K+ F+T + + ES+ S +
Sbjct: 367 PESTDTESGDAKDARNDSRNLKKASKNDDKKKDAKKITFSTDSESELESKESQKDE---- 422
Query: 92 FALKNDKTVNATTYEKSTIEEETTT---SEP 119
K DK + T +KS +E +T SEP
Sbjct: 423 ---KKDKKDSKTDNKKSVKNDEESTDADSEP 450
>gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]
Length = 170
Score = 28.1 bits (61), Expect = 9.6
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 212 SYKSCESQYSVNPELATMSYFHPSEGVSDTSFSKSAESSTFLGTTSSDMRRSGTRTSESK 271
S S S + E +T S S SDT S S+ SS+ TTSS S + +S S
Sbjct: 94 SDSSASDSSSESEETSTSS----SSEDSDTDESSSSSSSSASSTTSSSSSDSDSDSSSSS 149
Query: 272 IMTDIISIGSDNE 284
+ SD+E
Sbjct: 150 SSSTSTDSSSDDE 162
>gi|31377639 sialic acid binding Ig-like lectin 10 [Homo sapiens]
Length = 697
Score = 28.1 bits (61), Expect = 9.6
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 16 KSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHT--PNYAPANEKNGNYYKDIKQYVF--- 70
+ ST+ I +P PL + N++ N T P AP+ E N K + F
Sbjct: 590 RHSTILDYINVVPTAGPLAQKRNQKATPNSPRTPLPPGAPSPESKKNQKKQYQLPSFPEP 649
Query: 71 --TTQNPNGTESEISVRATTDLNF 92
+TQ P ES+ + T LNF
Sbjct: 650 KSSTQAPESQESQEELHYAT-LNF 672
>gi|58082089 hypothetical protein LOC161394 [Homo sapiens]
Length = 674
Score = 28.1 bits (61), Expect = 9.6
Identities = 29/110 (26%), Positives = 39/110 (35%), Gaps = 26/110 (23%)
Query: 16 KSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKNGNYYKDIKQYVFTTQNP 75
K S L+P EA PNV EDV + D P+ P P
Sbjct: 131 KESDLEPPEEAKPNV---TEDVFLESAMETD--PDPVP---------------------P 164
Query: 76 NGTESEISVRATTDLNFALKNDKTVNATTYEKSTIEEETTTSEPSHKNIQ 125
T SE+S + N L ++T E ++ E T EP + Q
Sbjct: 165 TETMSEVSGATVRERNLELLEEETEPGVPEESLRVQHEETGLEPPEQTKQ 214
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.126 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,398,366
Number of Sequences: 37866
Number of extensions: 434464
Number of successful extensions: 1242
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1222
Number of HSP's gapped (non-prelim): 45
length of query: 294
length of database: 18,247,518
effective HSP length: 101
effective length of query: 193
effective length of database: 14,423,052
effective search space: 2783649036
effective search space used: 2783649036
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.