Guide to the Human Genome
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Name: MUC15 Sequence: fasta or formatted (361aa) NCBI GI: 205360923
Description:

mucin 15 isoform a

Referenced in:

Mucins

Other entries for this name:
alt prot [311aa] mucin 15 isoform c
alt prot [334aa] mucin 15 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         17           1
 C cysteine            0.6          2           1
 D aspartate           5.3         19           2
 E glutamate           5.0         18           2
 F phenylalanine       3.6         13           1
 G glycine             4.2         15           1
 H histidine           1.9          7           1
 I isoleucine          6.4         23           2
 K lysine              5.5         20           3
 L leucine            10.5         38           2
 M methionine          1.4          5           1
 N asparagine          8.0         29           2
 P proline             8.9         32           2
 Q glutamine           1.7          6           1
 R arginine            2.5          9           2
 S serine             13.9         50           2
 T threonine           9.1         33           2
 V valine              3.9         14           1
 W tryptophan          0.8          3           1
 Y tyrosine            2.2          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mucin 15 isoform a 
MUC15                 0.923   mucin 15 isoform b 
MUC15                 0.824   mucin 15 isoform c 
LOC100133408          0.027   PREDICTED: similar to mucin 
LOC100134147          0.027   PREDICTED: hypothetical protein 
LOC645971             0.027   PREDICTED: similar to hCG2036794 
LOC645971             0.027   PREDICTED: similar to hCG2036794 
LOC645971             0.026   PREDICTED: similar to hCG2036794 
MUC17                 0.026   mucin 17 
HEG1                  0.024   HEG homolog 1 
MUC3B                 0.023   PREDICTED: mucin 3B, cell surface associated, parti...
LOC100134138          0.023   PREDICTED: similar to mucin, partial 
MUC12                 0.021   PREDICTED: mucin 12 
MUC12                 0.021   PREDICTED: mucin 12 
MUC12                 0.021   PREDICTED: mucin 12 
UBAP2L                0.020   ubiquitin associated protein 2-like isoform a [Homo...
UBAP2L                0.020   ubiquitin associated protein 2-like isoform b [Homo...
LOC100128719          0.019   PREDICTED: hypothetical protein, partial 
LOC100128719          0.019   PREDICTED: hypothetical protein, partial 
MUC16                 0.019   mucin 16 
UBN2                  0.017   ubinuclein 2 
FAM65A                0.017   hypothetical protein LOC79567 
MUC2                  0.017   mucin 2 precursor 
MUC5B                 0.016   mucin 5, subtype B, tracheobronchial 
C17orf47              0.016   hypothetical protein LOC284083 
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.016   PREDICTED: hypothetical protein LOC80164 
LOC100131514          0.014   PREDICTED: similar to hCG1747327, partial 
LOC100131514          0.014   PREDICTED: similar to intestinal mucin MUC3B 
MUC3A                 0.014   PREDICTED: mucin 3A, intestinal 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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