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Search of human proteins with 239508999
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239508999 PREDICTED: hypothetical protein [Homo sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743317 PREDICTED: hypothetical protein XP_002342791 [Homo ... 243 2e-65
gi|239508999 PREDICTED: hypothetical protein [Homo sapiens] 243 2e-65
gi|194248095 epsin 1 isoform b [Homo sapiens] 35 0.017
gi|194272148 epsin 1 isoform a [Homo sapiens] 35 0.017
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 33 0.037
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 33 0.037
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 33 0.037
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 33 0.048
gi|41350201 epsin 1 isoform c [Homo sapiens] 32 0.082
gi|5902018 tubulin polymerization promoting protein [Homo sapiens] 30 0.31
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 30 0.41
gi|195927017 phosphatidylinositol transfer protein, membrane-ass... 30 0.41
gi|195927015 phosphatidylinositol transfer protein, membrane-ass... 30 0.41
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 30 0.53
gi|239752681 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 29 0.91
gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens] 29 0.91
gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens] 29 0.91
gi|4504777 integrin, beta 7 [Homo sapiens] 29 0.91
gi|21361159 Wilms' tumour 1-associating protein isoform 1 [Homo ... 29 0.91
gi|166706917 hypothetical protein LOC199920 [Homo sapiens] 29 0.91
gi|217416354 sphingosine kinase type 1-interacting protein isofo... 28 1.2
gi|217416352 sphingosine kinase type 1-interacting protein isofo... 28 1.2
gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens] 28 1.2
gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific ... 28 1.6
gi|4504993 leukemia inhibitory factor receptor precursor [Homo s... 28 1.6
gi|189083786 leukemia inhibitory factor receptor precursor [Homo... 28 1.6
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 28 1.6
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 28 1.6
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 28 1.6
>gi|239743317 PREDICTED: hypothetical protein XP_002342791 [Homo
sapiens]
Length = 117
Score = 243 bits (620), Expect = 2e-65
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MSTPSEFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQA 60
MSTPSEFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQA
Sbjct: 1 MSTPSEFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQA 60
Query: 61 PNLSRGQAWRASLASPQNTSATGRVTCHGQSTWPLCRLKSNRRRKSGFAETRASRLA 117
PNLSRGQAWRASLASPQNTSATGRVTCHGQSTWPLCRLKSNRRRKSGFAETRASRLA
Sbjct: 61 PNLSRGQAWRASLASPQNTSATGRVTCHGQSTWPLCRLKSNRRRKSGFAETRASRLA 117
>gi|239508999 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 243 bits (620), Expect = 2e-65
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MSTPSEFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQA 60
MSTPSEFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQA
Sbjct: 1 MSTPSEFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQA 60
Query: 61 PNLSRGQAWRASLASPQNTSATGRVTCHGQSTWPLCRLKSNRRRKSGFAETRASRLA 117
PNLSRGQAWRASLASPQNTSATGRVTCHGQSTWPLCRLKSNRRRKSGFAETRASRLA
Sbjct: 61 PNLSRGQAWRASLASPQNTSATGRVTCHGQSTWPLCRLKSNRRRKSGFAETRASRLA 117
>gi|194248095 epsin 1 isoform b [Homo sapiens]
Length = 576
Score = 34.7 bits (78), Expect = 0.017
Identities = 27/95 (28%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 7 FGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQAPNLSRG 66
+G P P R +A + S W G P+ P+A PT P G DG S
Sbjct: 308 WGGPAPTPASGDPWRPAAPAGPSVDPWGGTPA-PAAGEGPTPDPWGSSDGGVPVSGPSAS 366
Query: 67 QAWRASLA-------SPQNTSATGRVTCHGQSTWP 94
W + A SP S G G T P
Sbjct: 367 DPWTPAPAFSDPWGGSPAKPSTNGTTAAGGFDTEP 401
>gi|194272148 epsin 1 isoform a [Homo sapiens]
Length = 662
Score = 34.7 bits (78), Expect = 0.017
Identities = 27/95 (28%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 7 FGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQAPNLSRG 66
+G P P R +A + S W G P+ P+A PT P G DG S
Sbjct: 394 WGGPAPTPASGDPWRPAAPAGPSVDPWGGTPA-PAAGEGPTPDPWGSSDGGVPVSGPSAS 452
Query: 67 QAWRASLA-------SPQNTSATGRVTCHGQSTWP 94
W + A SP S G G T P
Sbjct: 453 DPWTPAPAFSDPWGGSPAKPSTNGTTAAGGFDTEP 487
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 33.5 bits (75), Expect = 0.037
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 1 MSTPSEFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQA 60
M+ P+ P Q PQ PI SA S + T+ S P+ P++GP +S
Sbjct: 1 MAVPAALIPPTQLVPPQPPISTSASSSGTTTSTSSATSSPA----PSIGPP-----ASSG 51
Query: 61 PNLSRGQAWRASLASPQNTSATG 83
P L R + ++ A+ ++TG
Sbjct: 52 PTLFRPEPIASAAAAAATVTSTG 74
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 33.5 bits (75), Expect = 0.037
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 1 MSTPSEFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQA 60
M+ P+ P Q PQ PI SA S + T+ S P+ P++GP +S
Sbjct: 1 MAVPAALIPPTQLVPPQPPISTSASSSGTTTSTSSATSSPA----PSIGPP-----ASSG 51
Query: 61 PNLSRGQAWRASLASPQNTSATG 83
P L R + ++ A+ ++TG
Sbjct: 52 PTLFRPEPIASAAAAAATVTSTG 74
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 33.5 bits (75), Expect = 0.037
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 1 MSTPSEFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQA 60
M+ P+ P Q PQ PI SA S + T+ S P+ P++GP +S
Sbjct: 1 MAVPAALIPPTQLVPPQPPISTSASSSGTTTSTSSATSSPA----PSIGPP-----ASSG 51
Query: 61 PNLSRGQAWRASLASPQNTSATG 83
P L R + ++ A+ ++TG
Sbjct: 52 PTLFRPEPIASAAAAAATVTSTG 74
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 33.1 bits (74), Expect = 0.048
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 5 SEFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQAPNLS 64
S G P +A +P RAS S + G PS S P+ GS +L+
Sbjct: 438 SPTGTPPRASPTGTPSRASPTGTQSTASPTGSPSTASPTGSPST---ASPTGSPSRASLT 494
Query: 65 RGQAWRASLASPQNTSATGRVTCHGQSTW 93
R + RASL ++T++ R TW
Sbjct: 495 RTPS-RASLTKMESTASITRTPSRASPTW 522
Score = 30.8 bits (68), Expect = 0.24
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 2 STPSEFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQAP 61
ST S G+P +A ++P RAS S + PS+ S PT P S +
Sbjct: 480 STASPTGSPSRASLTRTPSRASLTKMESTASITRTPSRAS----PTWTPSTASPTGSPST 535
Query: 62 NLSRGQAWRASLASPQNTSATGRVTCHGQSTWP 94
L+ G RA+L + ++ R T P
Sbjct: 536 ALAMGSPSRAALTRTPSRASLTRTPSRASLTTP 568
Score = 29.3 bits (64), Expect = 0.70
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 2 STPSEFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQAP 61
ST S +P +A +P RAS S A L PS+ S R P P +
Sbjct: 117 STASLTRSPSRASLTTTPSRASLSMTPSTAAALTMPSRASLTRTP---PRASLTMTPSTA 173
Query: 62 NLSRGQAWRASLASPQNTSATG 83
+L+R + P TS TG
Sbjct: 174 SLTRTPPRASPTGMPSRTSPTG 195
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 2 STPSEFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQR 44
ST S G P +A +P RAS + S + + PS+ S R
Sbjct: 36 STASLMGTPSRASLTGTPPRASLKGTTSMASLMVSPSRASLTR 78
Score = 25.8 bits (55), Expect = 7.7
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 2 STPSEFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVG------PDGDRD 55
ST S G P +A SP AS S + G P + S P+ P
Sbjct: 354 STASPTGTPSRASPTGSPSTASLTGLSSTASPTGTPPRASPTGTPSTASLTRKPPRASPT 413
Query: 56 GSSQAPNLSRGQAWRASLASPQNTSATG 83
G ++++ + + +P S TG
Sbjct: 414 GMLSRTSITKMDSTASPTRTPPRASPTG 441
>gi|41350201 epsin 1 isoform c [Homo sapiens]
Length = 550
Score = 32.3 bits (72), Expect = 0.082
Identities = 28/95 (29%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 7 FGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQAPNLSRG 66
+G P P R +A + S W G P+ P+A PT P G DG S
Sbjct: 283 WGGPAPTPASGDPWRPAAPAGPSVDPWGGTPA-PAAGEGPTPDPWGSSDGGVPVSGPSAS 341
Query: 67 QAWRASLA-------SPQNTSATGRVTCHGQSTWP 94
W + A SP S G T G T P
Sbjct: 342 DPWTPAPAFSDPWGGSPAKPSTNG-TTAGGFDTEP 375
>gi|5902018 tubulin polymerization promoting protein [Homo
sapiens]
Length = 219
Score = 30.4 bits (67), Expect = 0.31
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 35 GKPSKPSAQRQPTVGPDGDRDGSSQAPNLSRGQAWRASLASPQNTSATGRVTCHGQSTWP 94
G PSK A ++ ++ +G +G++ +P LS + A + ATGR HG++
Sbjct: 20 GDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGR-EMHGKNWSK 78
Query: 95 LCR 97
LC+
Sbjct: 79 LCK 81
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 6 EFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQ 59
E G PG A P P + + G+P P + T GP GDR Q
Sbjct: 1190 EVGFPGLAGSPGIPGSKGEQGFMGPPGPQGQPGLPGSPGHATEGPKGDRGPQGQ 1243
>gi|195927017 phosphatidylinositol transfer protein,
membrane-associated isoform b [Homo sapiens]
Length = 1243
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 35 GKPSKPSAQRQPTVG-PDGDR--DGSSQAPNLSRGQAWRASLASPQNTSATGRVTCHGQS 91
GKPS + G PDG G +P+ S G+ W +S S ++ G V+ S
Sbjct: 272 GKPSTEARSAASNTGTPDGPEAPPGPDASPDASFGKQWSSSSRSSYSSQHGGAVSPQSLS 331
Query: 92 TWPLCRLKSNRRRKS 106
W + + + S
Sbjct: 332 EWRMQNIARDSENSS 346
>gi|195927015 phosphatidylinositol transfer protein,
membrane-associated isoform a [Homo sapiens]
Length = 1244
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 35 GKPSKPSAQRQPTVG-PDGDR--DGSSQAPNLSRGQAWRASLASPQNTSATGRVTCHGQS 91
GKPS + G PDG G +P+ S G+ W +S S ++ G V+ S
Sbjct: 272 GKPSTEARSAASNTGTPDGPEAPPGPDASPDASFGKQWSSSSRSSYSSQHGGAVSPQSLS 331
Query: 92 TWPLCRLKSNRRRKS 106
W + + + S
Sbjct: 332 EWRMQNIARDSENSS 346
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 29.6 bits (65), Expect = 0.53
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 8 GAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDR 54
G G AEGP P R S L+ G P +R P DGDR
Sbjct: 1675 GLKGAAEGP--PKRPGGSSPLNAVPCEGPPGSEPPRRPPPAPHDGDR 1719
>gi|239752681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 286
Score = 29.3 bits (64), Expect = 0.70
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 14/80 (17%)
Query: 8 GAPGQAE-GPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQAPNLSRG 66
GAP ++ G SP RA + G P P+ + P GS Q P LS
Sbjct: 38 GAPALSDNGALSPPRAIS----------GSPQNPTLSGNGALSPPRAISGSPQNPTLSGN 87
Query: 67 QAW---RASLASPQNTSATG 83
A RA SPQN + +G
Sbjct: 88 GALSPPRAISGSPQNPTLSG 107
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 28.9 bits (63), Expect = 0.91
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 8/101 (7%)
Query: 9 APGQAEGPQSPIRASAR--SHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQAPNLSRG 66
AP +S +R+ AR S +S K SK S R R G+
Sbjct: 73 APSNRPSSRSRVRSKARTPSRVSTDTRTSKASKASDVRCH------QRRGTHSRGRTPGR 126
Query: 67 QAWRASLASPQNTSATGRVTCHGQSTWPLCRLKSNRRRKSG 107
+ R+S SP S GR+ HG R+++ ++ G
Sbjct: 127 RGSRSSKRSPSRASTPGRIRTHGARPGMASRVRTPTSQQKG 167
>gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens]
Length = 924
Score = 28.9 bits (63), Expect = 0.91
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 2 STPSEFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGP 50
S+PS F P GP + + SC + L P+ P Q QP + P
Sbjct: 61 SSPSSFSPP--TAGPPCSVLQGTGASQSCHSALPIPATPPTQAQPAMTP 107
>gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens]
Length = 196
Score = 28.9 bits (63), Expect = 0.91
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 6 EFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQAPNLSR 65
E G+ G EGP + R +S + + G PS AQR GP S AP R
Sbjct: 60 EPGSRGLGEGPAAARRPQVQSIDTTPSGEGAPSFSRAQRPGRSGPSPSL-ASDPAP--GR 116
Query: 66 GQAW 69
G AW
Sbjct: 117 GAAW 120
>gi|4504777 integrin, beta 7 [Homo sapiens]
Length = 798
Score = 28.9 bits (63), Expect = 0.91
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 16 PQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGP--DGDRDGSSQAPNLSRGQAWRASL 73
PQ+P + + HL C P + + +V D + +APN + L
Sbjct: 483 PQAPHCSDGQGHLQCGVCSCAPGRLGRLCECSVAELSSPDLESGCRAPNGT------GPL 536
Query: 74 ASPQNTSATGRVTCHGQSTWPLC 96
S + GR +C GQS+ LC
Sbjct: 537 CSGKGHCQCGRCSCSGQSSGHLC 559
>gi|21361159 Wilms' tumour 1-associating protein isoform 1 [Homo
sapiens]
Length = 396
Score = 28.9 bits (63), Expect = 0.91
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 5 SEFGAPGQAEGPQS-PIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQAPNL 63
S+ AP + S P+ S + C+ PS S+ RQ T G R+G++ +
Sbjct: 244 SQASAPSTSRTTASEPVEQSEATSKDCSRLTNGPSNGSSSRQRTSGSGFHREGNTTEDDF 303
Query: 64 --SRGQAWRASLASPQNTSATG 83
S G ++S +S + T G
Sbjct: 304 PSSPGNGNKSSNSSEERTGRGG 325
>gi|166706917 hypothetical protein LOC199920 [Homo sapiens]
Length = 728
Score = 28.9 bits (63), Expect = 0.91
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 36 KPSKP------SAQRQPTVGPDGDRDGSSQAPNLSRGQAWRASLASPQNTSATGRVTCHG 89
KPS+P + QRQP P + + + +LS + + A P N AT H
Sbjct: 281 KPSRPPIVNLQAFQRQPAAVPKTQGEVTVEEGSLSPERLFNAEFEEPHNYEATISYLRHS 340
Query: 90 QSTWPLCRLK 99
++ LC K
Sbjct: 341 GNSINLCTAK 350
>gi|217416354 sphingosine kinase type 1-interacting protein isoform 1
[Homo sapiens]
Length = 1700
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 51 DGDRDGSSQAPNLSRGQAWRASLASPQNTSATGRVTCHGQSTWPLCRLKSNR 102
D +RD A + Q W A L SP S CH QS+ P R +R
Sbjct: 1201 DIERDSRESASSRRSSQDWTAGLLSPSLRSP----VCHRQSSMPDSRSPCSR 1248
>gi|217416352 sphingosine kinase type 1-interacting protein isoform 2
[Homo sapiens]
Length = 1671
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 51 DGDRDGSSQAPNLSRGQAWRASLASPQNTSATGRVTCHGQSTWPLCRLKSNR 102
D +RD A + Q W A L SP S CH QS+ P R +R
Sbjct: 1201 DIERDSRESASSRRSSQDWTAGLLSPSLRSP----VCHRQSSMPDSRSPCSR 1248
>gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens]
Length = 1446
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 3 TPSEFGAPGQAEGPQSPIRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQAPN 62
+PS+ G+P Q Q ++ SH + +G S P A P G DG P
Sbjct: 702 SPSQ-GSPSQESPSQGSTSQASPSHRNTIGVIGTTSSPKATGSTHSFPPGATDGPLALPG 760
Query: 63 LSRGQAWRASLASPQNT-SATGRVTCH 88
+G + + P T TG H
Sbjct: 761 QLQGNSIMEPPSWPSPTEDPTGHFLWH 787
>gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific
[Homo sapiens]
Length = 912
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 14 EGPQSPIRASARSH------LSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQAPNLSRGQ 67
+ P+SP SA + L+CT S+P A Q + D + SS AP
Sbjct: 272 KAPESPSLDSALASPLDPQALACTPASPPDSQPPASPQDSEALDFETPSSSLAPQTPDSA 331
Query: 68 AWRASLASPQN 78
+LASPQ+
Sbjct: 332 LASETLASPQS 342
>gi|4504993 leukemia inhibitory factor receptor precursor [Homo
sapiens]
Length = 1097
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 20 IRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQAPNL 63
IR S + + W K + + P+ GPD R+ SS NL
Sbjct: 509 IRCSTETFWKWSKWSNKKQHLTTEASPSKGPDTWREWSSDGKNL 552
>gi|189083786 leukemia inhibitory factor receptor precursor [Homo
sapiens]
Length = 1097
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 20 IRASARSHLSCTAWLGKPSKPSAQRQPTVGPDGDRDGSSQAPNL 63
IR S + + W K + + P+ GPD R+ SS NL
Sbjct: 509 IRCSTETFWKWSKWSNKKQHLTTEASPSKGPDTWREWSSDGKNL 552
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 19/91 (20%)
Query: 15 GPQSPIRASARSHLSCTAWL-----------------GKPSKPSAQRQPTVGPDGDRDGS 57
GP +P++A++ ++ TA G+P KP++Q T
Sbjct: 678 GPTTPLKATSGPAIASTATTLPTTTSQLMAEKDSGPAGQPEKPASQEVSTPSQARGEGSP 737
Query: 58 SQAPNLSRGQAWRASLASPQNTS-ATGRVTC 87
S+A L Q R+S A P TS G V C
Sbjct: 738 SEATRLPT-QGARSSAAFPPKTSPGGGEVPC 767
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 19/91 (20%)
Query: 15 GPQSPIRASARSHLSCTAWL-----------------GKPSKPSAQRQPTVGPDGDRDGS 57
GP +P++A++ ++ TA G+P KP++Q T
Sbjct: 678 GPTTPLKATSGPAIASTATTLPTTTSQLMAEKDSGPAGQPEKPASQEVSTPSQARGEGSP 737
Query: 58 SQAPNLSRGQAWRASLASPQNTS-ATGRVTC 87
S+A L Q R+S A P TS G V C
Sbjct: 738 SEATRLPT-QGARSSAAFPPKTSPGGGEVPC 767
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 19/91 (20%)
Query: 15 GPQSPIRASARSHLSCTAWL-----------------GKPSKPSAQRQPTVGPDGDRDGS 57
GP +P++A++ ++ TA G+P KP++Q T
Sbjct: 678 GPTTPLKATSGPAIASTATTLPTTTSQLMAEKDSGPAGQPEKPASQEVSTPSQARGEGSP 737
Query: 58 SQAPNLSRGQAWRASLASPQNTS-ATGRVTC 87
S+A L Q R+S A P TS G V C
Sbjct: 738 SEATRLPT-QGARSSAAFPPKTSPGGGEVPC 767
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.123 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,502,711
Number of Sequences: 37866
Number of extensions: 268225
Number of successful extensions: 993
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 936
Number of HSP's gapped (non-prelim): 117
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.