Guide to the Human Genome
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Name: TPPP Sequence: fasta or formatted (219aa) NCBI GI: 5902018
Description:

tubulin polymerization promoting protein

Referenced in:

Additional Brain Proteins
Cytoskeleton

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         23           3
 C cysteine            1.4          3           1
 D aspartate           6.4         14           1
 E glutamate           7.8         17           2
 F phenylalanine       3.7          8           1
 G glycine             9.6         21           2
 H histidine           2.3          5           1
 I isoleucine          3.7          8           2
 K lysine             11.9         26           2
 L leucine             4.6         10           1
 M methionine          0.9          2           1
 N asparagine          1.4          3           1
 P proline             4.1          9           2
 Q glutamine           2.3          5           1
 R arginine            6.8         15           2
 S serine              8.7         19           2
 T threonine           5.9         13           2
 V valine              6.4         14           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tubulin polymerization promoting protein 
TPPP3                 0.517   tubulin polymerization-promoting protein family memb...
TPPP3                 0.517   tubulin polymerization-promoting protein family memb...
TPPP2                 0.449   tubulin polymerization-promoting protein family mem...
CALM3                 0.027   calmodulin 3 
CALM2                 0.027   calmodulin 2 
CALM1                 0.027   calmodulin 1 
CALML3                0.019   calmodulin-like 3 
C1orf125              0.017   hypothetical protein LOC126859 isoform 1 
MAP1A                 0.015   microtubule-associated protein 1A 
SSH1                  0.015   slingshot 1 isoform 1 
LOC100287006          0.012   PREDICTED: hypothetical protein XP_002342791 
LOC100287006          0.012   PREDICTED: hypothetical protein 
ADRA2B                0.012   alpha-2B-adrenergic receptor 
TBC1D1                0.012   TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member...
MAML3                 0.012   mastermind-like 3 
ZFPM1                 0.012   zinc finger protein, multitype 1 
LRRC56                0.010   leucine rich repeat containing 56 
EPB41L2               0.010   erythrocyte membrane protein band 4.1-like 2 isoform ...
BTBD2                 0.010   BTB (POZ) domain containing 2 
EFCAB4A               0.010   EF-hand calcium binding domain 4A 
RAG1                  0.010   recombination activating gene 1 
LOC100130174          0.010   PREDICTED: hypothetical protein 
LOC100130174          0.010   PREDICTED: hypothetical protein 
LOC100130174          0.010   PREDICTED: hypothetical protein 
LIN37                 0.010   lin-37 homolog 
LOC389813             0.007   similar to CG15216-PA 
LRRC68                0.007   PREDICTED: leucine rich repeat containing 68 
LRRC68                0.007   PREDICTED: leucine rich repeat containing 68 
LRRC68                0.007   PREDICTED: leucine rich repeat containing 68 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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