Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PITPNM1 Sequence: fasta or formatted (1244aa) NCBI GI: 195927015
Description:

phosphatidylinositol transfer protein, membrane-associated isoform a

Referenced in:

Inositol Pathways

Other entries for this name:
alt prot [1243aa] phosphatidylinositol transfer protein, membrane-associated isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5        130           3
 C cysteine            1.6         20           2
 D aspartate           4.6         57           2
 E glutamate           6.8         85           3
 F phenylalanine       3.5         44           2
 G glycine             8.1        101           2
 H histidine           2.5         31           1
 I isoleucine          3.4         42           1
 K lysine              3.2         40           2
 L leucine             8.4        105           3
 M methionine          1.8         22           1
 N asparagine          1.9         24           2
 P proline             7.6         95           2
 Q glutamine           4.4         55           2
 R arginine            5.9         74           2
 S serine              9.9        123           4
 T threonine           4.9         61           2
 V valine              6.4         79           2
 W tryptophan          1.5         19           2
 Y tyrosine            3.0         37           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphatidylinositol transfer protein, membrane-ass... 
PITPNM1               0.998   phosphatidylinositol transfer protein, membrane-ass...
PITPNM2               0.537   phosphatidylinositol transfer protein, membrane-asso...
PITPNM3               0.349   PITPNM family member 3 
PITPNA                0.086   phosphatidylinositol transfer protein, alpha 
PITPNB                0.080   phosphatidylinositol transfer protein, beta 
PITPNC1               0.080   phosphatidylinositol transfer protein, cytoplasmic 1...
PITPNC1               0.079   phosphatidylinositol transfer protein, cytoplasmic 1...
DDHD2                 0.017   DDHD domain containing 2 
SEC23IP               0.015   Sec23-interacting protein p125 
DDHD1                 0.014   DDHD domain containing 1 isoform c 
DDHD1                 0.014   DDHD domain containing 1 isoform b 
DDHD1                 0.014   DDHD domain containing 1 isoform a 
ZBTB17                0.008   zinc finger and BTB domain containing 17 
GON4L                 0.007   gon-4-like isoform a 
ZNF469                0.006   zinc finger protein 469 
HECW2                 0.006   HECT, C2 and WW domain containing E3 ubiquitin prote...
NCOR2                 0.006   nuclear receptor co-repressor 2 isoform 1 
NCOR2                 0.006   nuclear receptor co-repressor 2 isoform 2 
TNRC18                0.006   trinucleotide repeat containing 18 
AIPL1                 0.006   aryl hydrocarbon receptor interacting protein-like 1...
AIPL1                 0.006   aryl hydrocarbon receptor interacting protein-like 1...
AIPL1                 0.006   aryl hydrocarbon receptor interacting protein-like 1...
ARID1B                0.005   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.005   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.005   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
RAB11FIP3             0.005   rab11-family interacting protein 3 isoform 1 
FEZF1                 0.005   FEZ family zinc finger 1 isoform 1 
LOC729570             0.005   PREDICTED: hypothetical protein 
LOC729570             0.005   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press