Guide to the Human Genome
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Name: C1orf168 Sequence: fasta or formatted (728aa) NCBI GI: 166706917
Description:

hypothetical protein LOC199920

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         34           2
 C cysteine            1.6         12           1
 D aspartate           3.6         26           2
 E glutamate          10.4         76           2
 F phenylalanine       3.0         22           2
 G glycine             4.7         34           2
 H histidine           2.5         18           3
 I isoleucine          5.1         37           2
 K lysine             11.5         84           2
 L leucine             7.8         57           3
 M methionine          1.4         10           1
 N asparagine          5.2         38           2
 P proline             8.5         62           4
 Q glutamine           4.7         34           2
 R arginine            3.6         26           2
 S serine              9.8         71           3
 T threonine           4.3         31           2
 V valine              4.5         33           2
 W tryptophan          0.7          5           1
 Y tyrosine            2.5         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC199920 
FYB                   0.081   FYN binding protein (FYB-120/130) isoform 1 
FYB                   0.075   FYN binding protein (FYB-120/130) isoform 2 
PRAM1                 0.023   PML-RARA regulated adaptor molecule 1 
GRID2IP               0.017   glutamate receptor, ionotropic, delta 2 (Grid2) int...
ANKRD12               0.014   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.014   ankyrin repeat domain 12 isoform 1 
SETD1B                0.013   SET domain containing 1B 
ANKRD11               0.012   ankyrin repeat domain 11 
ESF1                  0.012   ABT1-associated protein 
BRD4                  0.012   bromodomain-containing protein 4 isoform long 
CMYA5                 0.012   cardiomyopathy associated 5 
CCDC112               0.012   coiled-coil domain containing 112 isoform 1 
CCDC112               0.012   coiled-coil domain containing 112 isoform 2 
AMOTL1                0.011   angiomotin like 1 
NOLC1                 0.010   nucleolar and coiled-body phosphoprotein 1 
SLTM                  0.010   modulator of estrogen induced transcription isoform ...
SLTM                  0.010   modulator of estrogen induced transcription isoform ...
CHAF1A                0.010   chromatin assembly factor 1, subunit A (p150) 
C6orf97               0.010   hypothetical protein LOC80129 
GOLGA6D               0.010   golgi autoantigen, golgin subfamily a, 6D 
GOLGA6C               0.010   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
MPHOSPH8              0.010   M-phase phosphoprotein 8 
GOLGA6                0.010   golgi autoantigen, golgin subfamily a, 6 
PLEKHA7               0.010   pleckstrin homology domain containing, family A mem...
LOC283767             0.010   golgi autoantigen, golgin subfamily a-like 
MECP2                 0.010   methyl CpG binding protein 2 isoform 2 
MECP2                 0.010   methyl CpG binding protein 2 isoform 1 
TTN                   0.010   titin isoform N2-A 
LOC100133599          0.010   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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