Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SPHKAP Sequence: fasta or formatted (1700aa) NCBI GI: 217416354
Description:

sphingosine kinase type 1-interacting protein isoform 1

Referenced in:

Sphingomyelin, Ceramides, and Glycolipids

Other entries for this name:
alt prot [1671aa] sphingosine kinase type 1-interacting protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6        113           2
 C cysteine            2.8         48           1
 D aspartate           5.2         88           2
 E glutamate           8.5        145           3
 F phenylalanine       1.9         33           1
 G glycine             4.6         79           2
 H histidine           1.8         31           2
 I isoleucine          4.1         70           2
 K lysine              5.0         85           2
 L leucine             9.0        153           3
 M methionine          2.3         39           2
 N asparagine          5.1         86           2
 P proline             5.9        101           2
 Q glutamine           4.9         83           2
 R arginine            4.8         82           3
 S serine             13.9        236           5
 T threonine           5.0         85           2
 V valine              5.7         97           3
 W tryptophan          1.1         18           1
 Y tyrosine            1.6         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sphingosine kinase type 1-interacting protein isofo... 
SPHKAP                0.979   sphingosine kinase type 1-interacting protein isofo...
AKAP11                0.041   A-kinase anchor protein 11 
AKAP3                 0.011   A-kinase anchor protein 3 
AKAP4                 0.010   A-kinase anchor protein 4 isoform 2 
AKAP4                 0.010   A-kinase anchor protein 4 isoform 1 
MUC17                 0.007   mucin 17 
DSPP                  0.006   dentin sialophosphoprotein preproprotein 
MUC13                 0.005   mucin 13, epithelial transmembrane 
ACRC                  0.005   ACRC protein 
ANKRD31               0.004   PREDICTED: ankyrin repeat domain 31 
ANKRD31               0.004   PREDICTED: ankyrin repeat domain 31 
ANKRD31               0.004   PREDICTED: ankyrin repeat domain 31 
PPHLN1                0.004   periphilin 1 isoform 1 
TNRC18                0.004   trinucleotide repeat containing 18 
CUX2                  0.004   cut-like 2 
AFF1                  0.004   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
SEC24B                0.004   SEC24 (S. cerevisiae) homolog B isoform a 
MLLT1                 0.004   myeloid/lymphoid or mixed-lineage leukemia (trithora...
DMP1                  0.004   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.004   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
MUC4                  0.004   mucin 4 isoform a 
LOC100293760          0.004   PREDICTED: similar to hCG2002168 
LOC100287869          0.004   PREDICTED: similar to hCG2002168 
LOC100287869          0.004   PREDICTED: hypothetical protein XP_002342644 
NDUFV3                0.004   NADH-ubiquinone oxidoreductase flavoprotein 3 isofor...
PCLO                  0.004   piccolo isoform 2 
PCLO                  0.004   piccolo isoform 1 
LOC100130716          0.003   PREDICTED: similar to mucin 11 
MAST4                 0.003   microtubule associated serine/threonine kinase fami...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press