Guide to the Human Genome
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Name: LOC100128317 Sequence: fasta or formatted (503aa) NCBI GI: 239508938
Description:

PREDICTED: similar to hCG2036731

Not currently referenced in the text

Other entries for this name:
alt prot {503aa} PREDICTED: similar to hCG2036731
alt mRNA {503aa} PREDICTED: similar to hCG2036731
alt prot {564aa} PREDICTED: similar to hCG2036731
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         26           2
 C cysteine            1.4          7           1
 D aspartate           7.6         38           2
 E glutamate           5.4         27           1
 F phenylalanine       4.8         24           1
 G glycine             5.6         28           2
 H histidine           2.0         10           1
 I isoleucine          6.8         34           2
 K lysine              5.6         28           2
 L leucine             6.6         33           2
 M methionine          1.4          7           1
 N asparagine          7.0         35           2
 P proline             6.2         31           2
 Q glutamine           3.0         15           2
 R arginine            3.8         19           1
 S serine              8.7         44           2
 T threonine           8.3         42           1
 V valine              7.4         37           2
 W tryptophan          0.4          2           1
 Y tyrosine            3.2         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2036731 
LOC100128317          1.000   PREDICTED: similar to hCG2036731 
LOC100128317          1.000   PREDICTED: similar to hCG2036731 
LOC100128317          0.967   PREDICTED: similar to hCG2036731 
CDH29                 0.068   cadherin-like 29 
FAT4                  0.061   FAT tumor suppressor homolog 4 
PCDH9                 0.060   protocadherin 9 isoform 2 precursor 
PCDH9                 0.060   protocadherin 9 isoform 1 precursor 
CELSR1                0.058   cadherin EGF LAG seven-pass G-type receptor 1 
CDH12                 0.057   cadherin 12, type 2 preproprotein 
FAT1                  0.054   FAT tumor suppressor 1 precursor 
CDH23                 0.053   cadherin-like 23 isoform 1 precursor 
CELSR3                0.053   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
CELSR2                0.052   cadherin EGF LAG seven-pass G-type receptor 2 
FAT3                  0.048   FAT tumor suppressor homolog 3 
CDH7                  0.048   cadherin 7, type 2 preproprotein 
CDH7                  0.048   cadherin 7, type 2 preproprotein 
PCDH19                0.047   protocadherin 19 isoform a 
PCDH19                0.047   protocadherin 19 isoform b 
FLJ23834              0.047   hypothetical protein LOC222256 
DCHS2                 0.047   dachsous 2 isoform 1 
PCDH1                 0.047   protocadherin 1 isoform 2 precursor 
PCDH1                 0.047   protocadherin 1 isoform 1 precursor 
CDH10                 0.045   cadherin 10, type 2 preproprotein 
DSG2                  0.045   desmoglein 2 preproprotein 
PCDH11Y               0.045   protocadherin 11 Y-linked isoform c 
PCDH11Y               0.045   protocadherin 11 Y-linked isoform b 
PCDH11Y               0.045   protocadherin 11 Y-linked isoform a 
CDH23                 0.045   cadherin-like 23 isoform 2 precursor 
PCDH11X               0.044   protocadherin 11 X-linked isoform a precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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