Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 23943866
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23943866 family with sequence similarity 5, member B [Homo
sapiens]
(783 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23943866 family with sequence similarity 5, member B [Homo sa... 1610 0.0
gi|39979638 family with sequence similarity 5, member C [Homo sa... 1141 0.0
gi|148529000 deleted in bladder cancer 1 [Homo sapiens] 806 0.0
gi|45580688 complement component 7 precursor [Homo sapiens] 38 0.032
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 36 0.12
gi|33598931 scavenger receptor class F, member 1 isoform 3 precu... 36 0.16
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu... 36 0.16
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec... 36 0.16
gi|108773804 Fraser syndrome 1 [Homo sapiens] 35 0.27
gi|66346695 fibrillin 2 precursor [Homo sapiens] 35 0.35
gi|88758613 CD93 antigen precursor [Homo sapiens] 33 0.78
gi|69354859 ADAM metallopeptidase domain 8 precursor [Homo sapiens] 33 1.3
gi|4506115 protein C [Homo sapiens] 32 1.7
gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo ... 32 1.7
gi|13994364 keratin associated protein 3.2 [Homo sapiens] 32 2.3
gi|4507577 tumor necrosis factor receptor 2 precursor [Homo sapi... 32 3.0
gi|24430141 fibrillin 1 precursor [Homo sapiens] 32 3.0
gi|239755070 PREDICTED: similar to proprotein convertase subtili... 32 3.0
gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo ... 32 3.0
gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo ... 32 3.0
gi|31542661 transmembrane protein 57 [Homo sapiens] 32 3.0
gi|15055511 keratin associated protein 3-3 [Homo sapiens] 32 3.0
gi|4557391 complement component 8, beta polypeptide preproprotei... 31 3.9
gi|157738629 kinesin family member 13A isoform d [Homo sapiens] 31 3.9
gi|157738627 kinesin family member 13A isoform c [Homo sapiens] 31 3.9
gi|157738625 kinesin family member 13A isoform b [Homo sapiens] 31 3.9
gi|157738621 kinesin family member 13A isoform a [Homo sapiens] 31 3.9
gi|13994362 keratin associated protein 3.1 [Homo sapiens] 31 3.9
gi|187960042 selectin E precursor [Homo sapiens] 30 6.6
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 30 6.6
>gi|23943866 family with sequence similarity 5, member B [Homo
sapiens]
Length = 783
Score = 1610 bits (4168), Expect = 0.0
Identities = 783/783 (100%), Positives = 783/783 (100%)
Query: 1 MRWQCGTRFRGLRPAVAPWTALLALGLPGWVLAVSATAAAVVPEQHASVAGQHPLDWLLT 60
MRWQCGTRFRGLRPAVAPWTALLALGLPGWVLAVSATAAAVVPEQHASVAGQHPLDWLLT
Sbjct: 1 MRWQCGTRFRGLRPAVAPWTALLALGLPGWVLAVSATAAAVVPEQHASVAGQHPLDWLLT 60
Query: 61 DRGPFHRAQEYADFMERYRQGFTTRYRIYREFARWKVNNLALERKDFFSLPLPLAPEFIR 120
DRGPFHRAQEYADFMERYRQGFTTRYRIYREFARWKVNNLALERKDFFSLPLPLAPEFIR
Sbjct: 61 DRGPFHRAQEYADFMERYRQGFTTRYRIYREFARWKVNNLALERKDFFSLPLPLAPEFIR 120
Query: 121 NIRLLGRRPNLQQVTENLIKKYGTHFLLSATLGGEESLTIFVDKQKLGRKTETTGGASII 180
NIRLLGRRPNLQQVTENLIKKYGTHFLLSATLGGEESLTIFVDKQKLGRKTETTGGASII
Sbjct: 121 NIRLLGRRPNLQQVTENLIKKYGTHFLLSATLGGEESLTIFVDKQKLGRKTETTGGASII 180
Query: 181 GGSGNSTAVSLETLHQLAASYFIDRESTLRRLHHIQIATGAIKVTETRTGPLGCSNYDNL 240
GGSGNSTAVSLETLHQLAASYFIDRESTLRRLHHIQIATGAIKVTETRTGPLGCSNYDNL
Sbjct: 181 GGSGNSTAVSLETLHQLAASYFIDRESTLRRLHHIQIATGAIKVTETRTGPLGCSNYDNL 240
Query: 241 DSVSSVLVQSPENKVQLLGLQVLLPEYLRERFVAAALSYITCSSEGELVCKENDCWCKCS 300
DSVSSVLVQSPENKVQLLGLQVLLPEYLRERFVAAALSYITCSSEGELVCKENDCWCKCS
Sbjct: 241 DSVSSVLVQSPENKVQLLGLQVLLPEYLRERFVAAALSYITCSSEGELVCKENDCWCKCS 300
Query: 301 PTFPECNCPDADIQAMEDSLLQIQDSWATHNRQFEESEEFQALLKRLPDDRFLNSTAISQ 360
PTFPECNCPDADIQAMEDSLLQIQDSWATHNRQFEESEEFQALLKRLPDDRFLNSTAISQ
Sbjct: 301 PTFPECNCPDADIQAMEDSLLQIQDSWATHNRQFEESEEFQALLKRLPDDRFLNSTAISQ 360
Query: 361 FWAMDTSLQHRYQQLGAGLKVLFKKTHRILRRLFNLCKRCHRQPRFRLPKERSLSYWWNR 420
FWAMDTSLQHRYQQLGAGLKVLFKKTHRILRRLFNLCKRCHRQPRFRLPKERSLSYWWNR
Sbjct: 361 FWAMDTSLQHRYQQLGAGLKVLFKKTHRILRRLFNLCKRCHRQPRFRLPKERSLSYWWNR 420
Query: 421 IQSLLYCGESTFPGTFLEQSHSCTCPYDQSSCQGPIPCALGEGPACAHCAPDNSTRCGSC 480
IQSLLYCGESTFPGTFLEQSHSCTCPYDQSSCQGPIPCALGEGPACAHCAPDNSTRCGSC
Sbjct: 421 IQSLLYCGESTFPGTFLEQSHSCTCPYDQSSCQGPIPCALGEGPACAHCAPDNSTRCGSC 480
Query: 481 NPGYVLAQGLCRPEVAESLENFLGLETDLQDLELKYLLQKQDSRIEVHSIFISNDMRLGS 540
NPGYVLAQGLCRPEVAESLENFLGLETDLQDLELKYLLQKQDSRIEVHSIFISNDMRLGS
Sbjct: 481 NPGYVLAQGLCRPEVAESLENFLGLETDLQDLELKYLLQKQDSRIEVHSIFISNDMRLGS 540
Query: 541 WFDPSWRKRMLLTLKSNKYKPGLVHVMLALSLQICLTKNSTLEPVMAIYVNPFGGSHSES 600
WFDPSWRKRMLLTLKSNKYKPGLVHVMLALSLQICLTKNSTLEPVMAIYVNPFGGSHSES
Sbjct: 541 WFDPSWRKRMLLTLKSNKYKPGLVHVMLALSLQICLTKNSTLEPVMAIYVNPFGGSHSES 600
Query: 601 WFMPVNEGSFPDWERTNVDAAAQCQNWTITLGNRWKTFFETVHVYLRSRIKSLDDSSNET 660
WFMPVNEGSFPDWERTNVDAAAQCQNWTITLGNRWKTFFETVHVYLRSRIKSLDDSSNET
Sbjct: 601 WFMPVNEGSFPDWERTNVDAAAQCQNWTITLGNRWKTFFETVHVYLRSRIKSLDDSSNET 660
Query: 661 IYYEPLEMTDPSKNLGYMKINTLQVFGYSLPFDPDAIRDLILQLDYPYTQGSQDSALLQL 720
IYYEPLEMTDPSKNLGYMKINTLQVFGYSLPFDPDAIRDLILQLDYPYTQGSQDSALLQL
Sbjct: 661 IYYEPLEMTDPSKNLGYMKINTLQVFGYSLPFDPDAIRDLILQLDYPYTQGSQDSALLQL 720
Query: 721 IELRDRVNQLSPPGKVRLDLFSCLLRHRLKLANNEVGRIQSSLRAFNSKLPNPVEYETGK 780
IELRDRVNQLSPPGKVRLDLFSCLLRHRLKLANNEVGRIQSSLRAFNSKLPNPVEYETGK
Sbjct: 721 IELRDRVNQLSPPGKVRLDLFSCLLRHRLKLANNEVGRIQSSLRAFNSKLPNPVEYETGK 780
Query: 781 LCS 783
LCS
Sbjct: 781 LCS 783
>gi|39979638 family with sequence similarity 5, member C [Homo
sapiens]
Length = 766
Score = 1141 bits (2951), Expect = 0.0
Identities = 541/761 (71%), Positives = 639/761 (83%), Gaps = 15/761 (1%)
Query: 23 LALGLPGWVLAVSATAAAVVPEQHASVAGQHPLDWLLTDRGPFHRAQEYADFMERYRQGF 82
+AL L WVLAV+A V +QHA+ P DWLL+D+GPFHR+QEY DF++R RQGF
Sbjct: 21 IALSLHCWVLAVAA-----VSDQHAT----SPFDWLLSDKGPFHRSQEYTDFVDRSRQGF 71
Query: 83 TTRYRIYREFARWKVNNLALERKDFFSLPLPLAPEFIRNIRLLGRRPNLQQVTENLIKKY 142
+TRY+IYREF RWKVNNLA+ER++F PLPLAPEF RNIRLLGRRP LQQ+TENLIKKY
Sbjct: 72 STRYKIYREFGRWKVNNLAVERRNFLGSPLPLAPEFFRNIRLLGRRPTLQQITENLIKKY 131
Query: 143 GTHFLLSATLGGEESLTIFVDKQKLGRKTETTGGASIIGGSGNSTAVSLETLHQLAASYF 202
GTHFLLSATLGGEESLTIFVDK+KL ++ E + + NS++V+LETLHQLAASYF
Sbjct: 132 GTHFLLSATLGGEESLTIFVDKRKLSKRAEGSDSTT------NSSSVTLETLHQLAASYF 185
Query: 203 IDRESTLRRLHHIQIATGAIKVTETRTGPLGCSNYDNLDSVSSVLVQSPENKVQLLGLQV 262
IDR+STLRRLHHIQIA+ AIKVTETRTGPLGCSNYDNLDSVSSVLVQSPENK+QL GLQV
Sbjct: 186 IDRDSTLRRLHHIQIASTAIKVTETRTGPLGCSNYDNLDSVSSVLVQSPENKIQLQGLQV 245
Query: 263 LLPEYLRERFVAAALSYITCSSEGELVCKENDCWCKCSPTFPECNCPDADIQAMEDSLLQ 322
LLP+YL+ERFV AALSYI C+SEGE +CKENDCWC C P FPECNCP DIQAME++LL+
Sbjct: 246 LLPDYLQERFVQAALSYIACNSEGEFICKENDCWCHCGPKFPECNCPSMDIQAMEENLLR 305
Query: 323 IQDSWATHNRQFEESEEFQALLKRLPDDRFLNSTAISQFWAMDTSLQHRYQQLGAGLKVL 382
I ++W +N FEES+EF+ +KRLP + FLN++ I W MD++ Q RY+QL +K L
Sbjct: 306 ITETWKAYNSDFEESDEFKLFMKRLPMNYFLNTSTIMHLWTMDSNFQRRYEQLENSMKQL 365
Query: 383 FKKTHRILRRLFNLCKRCHRQPRFRLPKERSLSYWWNRIQSLLYCGESTFPGTFLEQSHS 442
F K +I+ +LF+L KRCH+QP LP++R+ +YW RIQS LYC E+ G+F E++HS
Sbjct: 366 FLKAQKIVHKLFSLSKRCHKQPLISLPRQRTSTYWLTRIQSFLYCNENGLLGSFSEETHS 425
Query: 443 CTCPYDQSSCQGPIPCALGEGPACAHCAPDNSTRCGSCNPGYVLAQGLCRPEVAESLENF 502
CTCP DQ C +PC +G+ AC CAPDN TRCG+CN GY+L+QGLC+PEVAES +++
Sbjct: 426 CTCPNDQVVCTAFLPCTVGDASACLTCAPDNRTRCGTCNTGYMLSQGLCKPEVAESTDHY 485
Query: 503 LGLETDLQDLELKYLLQKQDSRIEVHSIFISNDMRLGSWFDPSWRKRMLLTLKSNKYKPG 562
+G ETDLQDLE+KYLLQK D RIEVH+IFISNDMRL SWFDPSWRKRMLLTLKSNKYK
Sbjct: 486 IGFETDLQDLEMKYLLQKTDRRIEVHAIFISNDMRLNSWFDPSWRKRMLLTLKSNKYKSS 545
Query: 563 LVHVMLALSLQICLTKNSTLEPVMAIYVNPFGGSHSESWFMPVNEGSFPDWERTNVDAAA 622
LVH++L LSLQICLTKNSTLEPV+A+YVNPFGGSHSESWFMPVNE SFPDWERT +D
Sbjct: 546 LVHMILGLSLQICLTKNSTLEPVLAVYVNPFGGSHSESWFMPVNENSFPDWERTKLDLPL 605
Query: 623 QCQNWTITLGNRWKTFFETVHVYLRSRIKSLDDSSNETIYYEPLEMTDPSKNLGYMKINT 682
QC NWT+TLGN+WKTFFETVH+YLRSRIKS + NE+IYYEPLE DPS+NLGYMKIN
Sbjct: 606 QCYNWTLTLGNKWKTFFETVHIYLRSRIKSNGPNGNESIYYEPLEFIDPSRNLGYMKINN 665
Query: 683 LQVFGYSLPFDPDAIRDLILQLDYPYTQGSQDSALLQLIELRDRVNQLSPPGKVRLDLFS 742
+QVFGYS+ FDP+AIRDLILQLDYPYTQGSQDSALLQL+E+RDRVN+LSPPG+ RLDLFS
Sbjct: 666 IQVFGYSMHFDPEAIRDLILQLDYPYTQGSQDSALLQLLEIRDRVNKLSPPGQRRLDLFS 725
Query: 743 CLLRHRLKLANNEVGRIQSSLRAFNSKLPNPVEYETGKLCS 783
CLLRHRLKL+ +EV RIQS+L+AFN+KLPN ++Y+T KLCS
Sbjct: 726 CLLRHRLKLSTSEVVRIQSALQAFNAKLPNTMDYDTTKLCS 766
>gi|148529000 deleted in bladder cancer 1 [Homo sapiens]
Length = 761
Score = 806 bits (2082), Expect = 0.0
Identities = 396/750 (52%), Positives = 528/750 (70%), Gaps = 30/750 (4%)
Query: 44 EQHASVAGQHPLDWLLTDRGPFHRAQEYADFMERYRQGFTTRYRIYREFARWKVNNLALE 103
+QH S DWL++DRGPFH ++ Y F+ER+RQGFTTRY+IYREFARWKV N A+E
Sbjct: 31 DQHVS----KEFDWLISDRGPFHHSRSYLSFVERHRQGFTTRYKIYREFARWKVRNTAIE 86
Query: 104 RKDFFSLPLPLAPEFIRNIRLLGRRPNLQQVTENLIKKYGTHFLLSATLGGEESLTIFVD 163
R+D P+PL PEF R+IRLLGRRP QQ + +IKKYGTH L+SATLGGEE+LT+++D
Sbjct: 87 RRDLVRHPVPLMPEFQRSIRLLGRRPTTQQFIDTIIKKYGTHLLISATLGGEEALTMYMD 146
Query: 164 KQKLGRKTETTGGASIIGGSGNSTAVSLETLHQLAASYFIDRESTLRRLHHIQIATGAIK 223
K +L RK SGN+T S+E LHQLA+SYF+DR+ T+RRLH IQI+TGAIK
Sbjct: 147 KSRLDRK------------SGNATQ-SVEALHQLASSYFVDRDGTMRRLHEIQISTGAIK 193
Query: 224 VTETRTGPLGCSNYDNLDSVSSVLVQSPENKVQLLGLQVLLPEYLRERFVAAALSYITCS 283
VTETRTGPLGC++YDNLDSVSSVL+QS E+K+ L GLQ++ P+YL+E+FV +ALSYI C+
Sbjct: 194 VTETRTGPLGCNSYDNLDSVSSVLLQSTESKLHLQGLQIIFPQYLQEKFVQSALSYIMCN 253
Query: 284 SEGELVCKENDCWCKCSPTFPECNCPDADIQAMEDSLLQIQDSWATHNRQFEESEEFQAL 343
EGE +C+ + C C+C+ FP+CNCP DIQ ME +L + SWA + E S+EF++
Sbjct: 254 GEGEYLCQNSQCRCQCAEEFPQCNCPITDIQIMEYTLANMAKSWAEAYKDLENSDEFKSF 313
Query: 344 LKRLPDDRFLNSTAISQFWAMDTSLQHRYQQLGAGLKVLFKKTHRILRRLFNLCKRCHRQ 403
+KRLP + FL +I Q W D LQ+RY+ L + + +K R R+LF L RC
Sbjct: 314 MKRLPSNHFLTIGSIHQHWGNDWDLQNRYKLLQSATEAQRQKIQRTARKLFGLSVRCRHN 373
Query: 404 PRFRLPKERSLSYWWNRIQSLLYCGESTFPGTFLEQSHSCTCPYDQSSCQGPIPCALGEG 463
P +LP+ER++ W R+QSLLYC E+ F GTFLE SC C + CQ PIPC +G
Sbjct: 374 PNHQLPRERTIQQWLARVQSLLYCNENGFWGTFLESQRSCVCHGSTTLCQRPIPCVIGGN 433
Query: 464 PACAHCAPDNSTRCGSCNPGYVLAQGLCRPEVAES--LENFLGLETDL--QDLELKYLLQ 519
+CA C+ N + CGSCN GY L +G C P+ +S E F+ ETDL QDLELKYLLQ
Sbjct: 434 NSCAMCSLANISLCGSCNKGYKLYRGRCEPQNVDSERSEQFISFETDLDFQDLELKYLLQ 493
Query: 520 KQDSRIEVHSIFISNDMRLGSWFDPSWRKRMLLTLKSNKYKPGLVHVMLALSLQICLTKN 579
K DSR+ VH+ FISN++RL ++FDP WRKRM LTLKSNK + +H+++ +S++IC +N
Sbjct: 494 KMDSRLYVHTTFISNEIRLDTFFDPRWRKRMSLTLKSNKNRMDFIHMVIGMSMRICQMRN 553
Query: 580 STLEPVMAIYVNPFGGSHSESWFMPVNEGSFPDWERTNVDAAAQCQNWTITLGNRWKTFF 639
S+L+P+ +YVNPF GSHSE W MP E +P WE+ + +QC NWT+ LGNRWKTFF
Sbjct: 554 SSLDPMFFVYVNPFSGSHSEGWNMPFGEFGYPRWEKIRLQ-NSQCYNWTLLLGNRWKTFF 612
Query: 640 ETVHVYLRSRIKSLDDSSNETIYYEPLEMTDPSKNLGYMKINTLQVFGYSLPFDPDAIRD 699
ETVH+YLRSR + NET P++++DPSK Y+KI+ +QVFGYSL F+ D +R
Sbjct: 613 ETVHIYLRSRTRLPTLLRNET-GQGPVDLSDPSKRQFYIKISDVQVFGYSLRFNADLLRS 671
Query: 700 LILQLDYPYTQGSQ----DSALLQLIELRDRVNQLSP---PGKVRLDLFSCLLRHRLKLA 752
+ Q++ YTQG Q S +L L+++RDR+N+L+P PGK +LDLFSC+L+HRLKL
Sbjct: 672 AVQQVNQSYTQGGQFYSSSSVMLLLLDIRDRINRLAPPVAPGKPQLDLFSCMLKHRLKLT 731
Query: 753 NNEVGRIQSSLRAFNSKLPNPVEYETGKLC 782
N+E+ R+ +L +N+++ + T KLC
Sbjct: 732 NSEIIRVNHALDLYNTEILKQSDQMTAKLC 761
>gi|45580688 complement component 7 precursor [Homo sapiens]
Length = 843
Score = 38.1 bits (87), Expect = 0.032
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 116 PEFIRNI----RLLGRRPNLQQVT--ENLIKKYGTHFLLSATLGGEESLTIFVDKQKL 167
PEF++ + L P+L + LI +YGTH+L S +LGGE + +VD +KL
Sbjct: 267 PEFLQLAEPFWKELSHLPSLYDYSAYRRLIDQYGTHYLQSGSLGGEYRVLFYVDSEKL 324
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 36.2 bits (82), Expect = 0.12
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 443 CTCPYDQSSCQGPIPCALG-EGPA-CAHCAPD-NSTRCGSCNPGY----VLAQGLCRP 493
C CPY +S + C L +G A C CAP RC SC PGY + G CRP
Sbjct: 814 CPCPYIDASRRFSDTCFLDTDGQATCDACAPGYTGRRCESCAPGYEGNPIQPGGKCRP 871
>gi|33598931 scavenger receptor class F, member 1 isoform 3
precursor [Homo sapiens]
Length = 569
Score = 35.8 bits (81), Expect = 0.16
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 440 SHSCTCPYDQSSCQGPIPCALG-EGPACAH----------CAPDNSTRCGSCNPGY 484
S CTCP + +PC G G CAH C+PD + C SC PG+
Sbjct: 234 SGECTCPPGFRGARCELPCPAGSHGVQCAHSCGRCKHNEPCSPDTGS-CESCEPGW 288
>gi|33598929 scavenger receptor class F, member 1 isoform 1
precursor [Homo sapiens]
Length = 830
Score = 35.8 bits (81), Expect = 0.16
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 440 SHSCTCPYDQSSCQGPIPCALG-EGPACAH----------CAPDNSTRCGSCNPGY 484
S CTCP + +PC G G CAH C+PD + C SC PG+
Sbjct: 234 SGECTCPPGFRGARCELPCPAGSHGVQCAHSCGRCKHNEPCSPDTGS-CESCEPGW 288
>gi|145309306 scavenger receptor class F, member 1 isoform 5
precursor [Homo sapiens]
Length = 744
Score = 35.8 bits (81), Expect = 0.16
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 440 SHSCTCPYDQSSCQGPIPCALG-EGPACAH----------CAPDNSTRCGSCNPGY 484
S CTCP + +PC G G CAH C+PD + C SC PG+
Sbjct: 234 SGECTCPPGFRGARCELPCPAGSHGVQCAHSCGRCKHNEPCSPDTGS-CESCEPGW 288
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 35.0 bits (79), Expect = 0.27
Identities = 26/112 (23%), Positives = 34/112 (30%), Gaps = 33/112 (29%)
Query: 427 CGESTFPGTFLEQSHSC-TCPYDQSSCQGPIPCALGEGP--------------------- 464
C + FPG +L+ +H C C SC C P
Sbjct: 890 CSTTCFPGHYLDDNHVCQPCNTHCGSCDSQASCTSCRDPNKVLLFGECQYESCAPQYYLD 949
Query: 465 -----------ACAHCAPDNSTRCGSCNPGYVLAQGLCRPEVAESLENFLGL 505
+C+ C+ T C C GYVL G C + S GL
Sbjct: 950 FSTNTCKECDWSCSACSGPLKTDCLQCMDGYVLQDGACVEQCLSSFYQDSGL 1001
Score = 31.6 bits (70), Expect = 3.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 465 ACAHCAPDNSTRCGSCNPGYVLAQGLCRPEVAE 497
+CA C+ + C +C+P L QG C P E
Sbjct: 611 SCASCSGPTPSHCTACSPPKALRQGHCLPRCGE 643
>gi|66346695 fibrillin 2 precursor [Homo sapiens]
Length = 2912
Score = 34.7 bits (78), Expect = 0.35
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 427 CGESTFPGTFLEQSHSCTCP----YDQ--SSCQGPIPCALGEGPACAHCAPDNSTRCGSC 480
CG ++ T S+ C CP +DQ S+C C+ + P C+ C
Sbjct: 2664 CGSASCYNTL--GSYKCACPSGFSFDQFSSACHDVNECSSSKNPCNYGCSNTEGGYLCGC 2721
Query: 481 NPGYV-LAQGLCRPEVAESLENFLGLETDLQD 511
PGY + QG C + + +L L+T++ +
Sbjct: 2722 PPGYYRVGQGHCVSGMGFNKGQYLSLDTEVDE 2753
>gi|88758613 CD93 antigen precursor [Homo sapiens]
Length = 652
Score = 33.5 bits (75), Expect = 0.78
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 449 QSSCQGPIPCALGEGPACAHCA-PDNSTRCGSCNPGYVLA 487
+ +CQ CALG P C D S C SC GYVLA
Sbjct: 380 EGACQDVDECALGRSPCAQGCTNTDGSFHC-SCEEGYVLA 418
>gi|69354859 ADAM metallopeptidase domain 8 precursor [Homo sapiens]
Length = 856
Score = 32.7 bits (73), Expect = 1.3
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 13/106 (12%)
Query: 392 RLFNLCKRCHRQPRFRLPKERSLSYWWNRIQSLLYCGESTFPGTFLEQSHSCTC--PYD- 448
R+F+ C + + + P+ L+ N G F+E+ C C P D
Sbjct: 374 RMFSDCSQAYLESFLERPQSVCLA---NAPDLSHLVGGPVCGNLFVERGEQCDCGPPEDC 430
Query: 449 QSSCQGPIPCALGEGPACAHCAPDNSTRCGSCNPGYVLAQGLCRPE 494
++ C C L EG CAH T C C A LCRP+
Sbjct: 431 RNRCCNSTTCQLAEGAQCAH-----GTCCQECK--VKPAGELCRPK 469
>gi|4506115 protein C [Homo sapiens]
Length = 461
Score = 32.3 bits (72), Expect = 1.7
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 425 LYCGESTFPGTFLEQSHSCTCPYDQSSCQGPIP---CALGEGPACAHCAPDNSTRCGSCN 481
L CG T S C ++ CQ + C+L G +C + R SC
Sbjct: 104 LCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCA 163
Query: 482 PGYVLAQGL--CRPEV 495
PGY L L C P V
Sbjct: 164 PGYKLGDDLLQCHPAV 179
>gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo
sapiens]
Length = 2923
Score = 32.3 bits (72), Expect = 1.7
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 437 LEQSHSCTCPYDQSSCQGPIPCALGEGPACAHCAPDNSTRCGSCNPGY 484
L+ SH + +Q C P PC PA ++C+ D + SC+PGY
Sbjct: 1777 LDPSHGESINVEQG-CSLPDPCDSNPCPANSYCSNDWDSYSCSCDPGY 1823
>gi|13994364 keratin associated protein 3.2 [Homo sapiens]
Length = 98
Score = 32.0 bits (71), Expect = 2.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 452 CQGPIPCALGEGPACAHCAPDNSTRCGSCNP 482
C C++ GPA C+ D S RCG C P
Sbjct: 3 CCASRSCSVPTGPATTICSSDKSCRCGVCLP 33
>gi|4507577 tumor necrosis factor receptor 2 precursor [Homo
sapiens]
Length = 461
Score = 31.6 bits (70), Expect = 3.0
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 418 WNRIQSLLYCGESTFPGTFLEQSHSCTCPYDQS---SCQGPIPCALGEGPACAHCAPDNS 474
WN + L CG +Q + C +Q+ +C+ CAL + C CAP
Sbjct: 87 WNWVPECLSCGSRCSS----DQVETQACTREQNRICTCRPGWYCALSKQEGCRLCAPLRK 142
Query: 475 TR--CGSCNPGYVLAQGLCRP 493
R G PG + +C+P
Sbjct: 143 CRPGFGVARPGTETSDVVCKP 163
>gi|24430141 fibrillin 1 precursor [Homo sapiens]
Length = 2871
Score = 31.6 bits (70), Expect = 3.0
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 419 NRIQSLLYCGESTFPGTFLEQSHSCTCP----YDQSS--CQGPIPCALGEGPACAHCAPD 472
N S CG ++ T S+ C CP Y+Q S CQ C + P C+
Sbjct: 2609 NECLSAHICGGASCHNTL--GSYKCMCPAGFQYEQFSGGCQDINECGSAQAPCSYGCSNT 2666
Query: 473 NSTRCGSCNPGYV-LAQGLC 491
C PGY + QG C
Sbjct: 2667 EGGYLCGCPPGYFRIGQGHC 2686
>gi|239755070 PREDICTED: similar to proprotein convertase
subtilisin/kexin type 5 [Homo sapiens]
Length = 853
Score = 31.6 bits (70), Expect = 3.0
Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 30/103 (29%)
Query: 395 NLCKRCHRQPRFRLPKERSLSYWWNRIQSLLYCGESTFPGTFLEQSHSCTCPYDQSSCQG 454
+LCK+C QP L Y C E G++ E C +C+G
Sbjct: 235 DLCKKCQMQPGHPLFLHEGRCY--------SKCPE----GSYAEDGICERCSSPCRTCEG 282
Query: 455 PIPCALGEGPACAHCAPDNSTRCGSCNPGYVLAQGLCRPEVAE 497
N+T C SC G+VL G+C+ E
Sbjct: 283 ------------------NATNCHSCEGGHVLHHGVCQENCPE 307
>gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo
sapiens]
Length = 853
Score = 31.6 bits (70), Expect = 3.0
Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 30/103 (29%)
Query: 395 NLCKRCHRQPRFRLPKERSLSYWWNRIQSLLYCGESTFPGTFLEQSHSCTCPYDQSSCQG 454
+LCK+C QP L Y C E G++ E C +C+G
Sbjct: 235 DLCKKCQMQPGHPLFLHEGRCY--------SKCPE----GSYAEDGICERCSSPCRTCEG 282
Query: 455 PIPCALGEGPACAHCAPDNSTRCGSCNPGYVLAQGLCRPEVAE 497
N+T C SC G+VL G+C+ E
Sbjct: 283 ------------------NATNCHSCEGGHVLHHGVCQENCPE 307
>gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo
sapiens]
Length = 853
Score = 31.6 bits (70), Expect = 3.0
Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 30/103 (29%)
Query: 395 NLCKRCHRQPRFRLPKERSLSYWWNRIQSLLYCGESTFPGTFLEQSHSCTCPYDQSSCQG 454
+LCK+C QP L Y C E G++ E C +C+G
Sbjct: 235 DLCKKCQMQPGHPLFLHEGRCY--------SKCPE----GSYAEDGICERCSSPCRTCEG 282
Query: 455 PIPCALGEGPACAHCAPDNSTRCGSCNPGYVLAQGLCRPEVAE 497
N+T C SC G+VL G+C+ E
Sbjct: 283 ------------------NATNCHSCEGGHVLHHGVCQENCPE 307
>gi|31542661 transmembrane protein 57 [Homo sapiens]
Length = 664
Score = 31.6 bits (70), Expect = 3.0
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 667 EMTDPSKNLGYMKINTLQVFGYSLPFD----PDAIRDLILQLDY--PYTQGSQDSALLQ- 719
E T+ +N +I L+ G L D D IR+L L++ Y + +D+ +L
Sbjct: 501 ECTETLRN----RIRELEAEGKKLTMDMKVKEDQIRELELKVQELRKYKENEKDTEVLMS 556
Query: 720 -LIELRDRV----NQLSPPGKVRLDLFSCL--LRHRLKLANNEVGRIQSSLRAFNSKL 770
L ++D+ N LS +++LDLFS L + +L++A ++ + ++ K+
Sbjct: 557 ALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKI 614
>gi|15055511 keratin associated protein 3-3 [Homo sapiens]
Length = 98
Score = 31.6 bits (70), Expect = 3.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 458 CALGEGPACAHCAPDNSTRCGSCNP 482
C++ GPA C+ D S RCG C P
Sbjct: 9 CSVPTGPATTICSSDKSCRCGVCLP 33
>gi|4557391 complement component 8, beta polypeptide preproprotein
[Homo sapiens]
Length = 591
Score = 31.2 bits (69), Expect = 3.9
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 112 LPLAPEFIRNIRLLGRRPNLQQVTENLIKKYGTHFLLSATLGGEESLTIFVDKQKLGRKT 171
L L EF++ ++ L + + + L + +GTH++ A LGG T+ ++K+ + R
Sbjct: 311 LMLHYEFLQRVKRLPLEYSYGEYRD-LFRDFGTHYITEAVLGGIYEYTLVMNKEAMERGD 369
Query: 172 ETTGGASI-------IGGSGNSTAVSL 191
T IGG+ VSL
Sbjct: 370 YTLNNVHACAKNDFKIGGAIEEVYVSL 396
>gi|157738629 kinesin family member 13A isoform d [Homo sapiens]
Length = 1749
Score = 31.2 bits (69), Expect = 3.9
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 91 EFARWKVNNLALERKDFFSLPLPLAPEFIRNIRLLGRRPNLQQVTENLIKKYGTHFLLSA 150
EFA + V N +LE +++FS + L+ N R+L + + T ++ Y +H +A
Sbjct: 1505 EFADFSVYNASLENREWFSSKVDLS-----NSRVLEKEVSRSPTTSSITSGYFSHSASNA 1559
Query: 151 TL 152
TL
Sbjct: 1560 TL 1561
>gi|157738627 kinesin family member 13A isoform c [Homo sapiens]
Length = 1757
Score = 31.2 bits (69), Expect = 3.9
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 91 EFARWKVNNLALERKDFFSLPLPLAPEFIRNIRLLGRRPNLQQVTENLIKKYGTHFLLSA 150
EFA + V N +LE +++FS + L+ N R+L + + T ++ Y +H +A
Sbjct: 1505 EFADFSVYNASLENREWFSSKVDLS-----NSRVLEKEVSRSPTTSSITSGYFSHSASNA 1559
Query: 151 TL 152
TL
Sbjct: 1560 TL 1561
>gi|157738625 kinesin family member 13A isoform b [Homo sapiens]
Length = 1770
Score = 31.2 bits (69), Expect = 3.9
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 91 EFARWKVNNLALERKDFFSLPLPLAPEFIRNIRLLGRRPNLQQVTENLIKKYGTHFLLSA 150
EFA + V N +LE +++FS + L+ N R+L + + T ++ Y +H +A
Sbjct: 1518 EFADFSVYNASLENREWFSSKVDLS-----NSRVLEKEVSRSPTTSSITSGYFSHSASNA 1572
Query: 151 TL 152
TL
Sbjct: 1573 TL 1574
>gi|157738621 kinesin family member 13A isoform a [Homo sapiens]
Length = 1805
Score = 31.2 bits (69), Expect = 3.9
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 91 EFARWKVNNLALERKDFFSLPLPLAPEFIRNIRLLGRRPNLQQVTENLIKKYGTHFLLSA 150
EFA + V N +LE +++FS + L+ N R+L + + T ++ Y +H +A
Sbjct: 1553 EFADFSVYNASLENREWFSSKVDLS-----NSRVLEKEVSRSPTTSSITSGYFSHSASNA 1607
Query: 151 TL 152
TL
Sbjct: 1608 TL 1609
>gi|13994362 keratin associated protein 3.1 [Homo sapiens]
Length = 98
Score = 31.2 bits (69), Expect = 3.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 458 CALGEGPACAHCAPDNSTRCGSCNP 482
C++ GPA C+ D S RCG C P
Sbjct: 9 CSVPTGPATTFCSFDKSCRCGVCLP 33
>gi|187960042 selectin E precursor [Homo sapiens]
Length = 610
Score = 30.4 bits (67), Expect = 6.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 275 AALSYITCSSEGELVCKENDCWCKCSPTFPECNC 308
AA + +CS GE V N+ CKC P F C
Sbjct: 141 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKC 174
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 30.4 bits (67), Expect = 6.6
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 427 CGESTFPGTFLEQSHSCTCPYDQSSCQGPIPCALGEGPACAHC-APDNSTRCGSCNPGY 484
C E + +C CP+ S G C + G C A T+C C PGY
Sbjct: 1718 CQEGYYGNAVHGSCRACPCPHTNSFATG---CVVNGGDVRCSCKAGYTGTQCERCAPGY 1773
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,876,815
Number of Sequences: 37866
Number of extensions: 1400294
Number of successful extensions: 3705
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 3642
Number of HSP's gapped (non-prelim): 94
length of query: 783
length of database: 18,247,518
effective HSP length: 110
effective length of query: 673
effective length of database: 14,082,258
effective search space: 9477359634
effective search space used: 9477359634
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.