Guide to the Human Genome
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Name: TMEM57 Sequence: fasta or formatted (664aa) NCBI GI: 31542661
Description:

transmembrane protein 57

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         46           3
 C cysteine            1.5         10           1
 D aspartate           3.9         26           1
 E glutamate           8.6         57           2
 F phenylalanine       3.9         26           2
 G glycine             3.3         22           2
 H histidine           1.8         12           2
 I isoleucine          5.1         34           2
 K lysine             10.1         67           2
 L leucine            10.7         71           2
 M methionine          2.4         16           1
 N asparagine          5.0         33           4
 P proline             3.6         24           2
 Q glutamine           6.2         41           2
 R arginine            5.1         34           2
 S serine              8.7         58           4
 T threonine           3.8         25           2
 V valine              5.4         36           2
 W tryptophan          1.1          7           1
 Y tyrosine            2.9         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 57 
RAI14                 0.037   retinoic acid induced 14 isoform d 
RAI14                 0.037   retinoic acid induced 14 isoform c 
RAI14                 0.037   retinoic acid induced 14 isoform b 
RAI14                 0.037   retinoic acid induced 14 isoform a 
RAI14                 0.037   retinoic acid induced 14 isoform a 
RAI14                 0.037   retinoic acid induced 14 isoform a 
KIF20B                0.037   M-phase phosphoprotein 1 
MYH3                  0.037   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH10                 0.036   myosin, heavy polypeptide 10, non-muscle 
EEA1                  0.035   early endosome antigen 1, 162kD 
MYH1                  0.034   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH13                 0.034   myosin, heavy polypeptide 13, skeletal muscle [Homo...
RRBP1                 0.034   ribosome binding protein 1 
RRBP1                 0.034   ribosome binding protein 1 
MYH4                  0.034   myosin, heavy polypeptide 4, skeletal muscle 
CLIP1                 0.032   restin isoform b 
CLIP1                 0.032   restin isoform a 
TSGA10                0.032   testis specific, 10 
TSGA10                0.032   testis specific, 10 
MYH2                  0.032   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.032   myosin, heavy chain 2, skeletal muscle, adult [Homo...
GOLGB1                0.032   golgi autoantigen, golgin subfamily b, macrogolgin ...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CENPE                 0.030   centromere protein E 
MYH8                  0.030   myosin, heavy chain 8, skeletal muscle, perinatal [...
ERC1                  0.029   RAB6-interacting protein 2 isoform delta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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