Guide to the Human Genome
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Name: SELE Sequence: fasta or formatted (610aa) NCBI GI: 187960042
Description:

selectin E precursor

Referenced in:

Additional Host Defense Functions
Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         41           2
 C cysteine            7.9         48           1
 D aspartate           2.1         13           1
 E glutamate           8.0         49           2
 F phenylalanine       3.8         23           1
 G glycine             7.5         46           1
 H histidine           1.5          9           1
 I isoleucine          3.0         18           1
 K lysine              4.8         29           3
 L leucine             6.9         42           2
 M methionine          1.6         10           1
 N asparagine          4.9         30           2
 P proline             5.7         35           2
 Q glutamine           4.8         29           2
 R arginine            2.8         17           1
 S serine             10.8         66           2
 T threonine           6.6         40           2
 V valine              5.2         32           2
 W tryptophan          2.5         15           1
 Y tyrosine            3.0         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   selectin E precursor 
SELP                  0.397   selectin P precursor 
SELL                  0.245   selectin L precursor 
CSMD3                 0.141   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.141   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.141   CUB and Sushi multiple domains 3 isoform 1 
SVEP1                 0.134   polydom 
CSMD1                 0.120   CUB and Sushi multiple domains 1 
CSMD2                 0.119   CUB and Sushi multiple domains 2 
CR2                   0.105   complement component (3d/Epstein Barr virus) recepto...
CR2                   0.105   complement component (3d/Epstein Barr virus) recepto...
CR1                   0.102   complement receptor 1 isoform S precursor 
CR1                   0.102   complement receptor 1 isoform F precursor 
CR1L                  0.094   complement component (3b/4b) receptor 1-like 
C4BPA                 0.070   complement component 4 binding protein, alpha chain p...
APOH                  0.062   apolipoprotein H precursor 
SRPX                  0.058   sushi-repeat-containing protein, X-linked 
F13B                  0.057   coagulation factor XIII B subunit precursor 
CFH                   0.055   complement factor H isoform b precursor 
CFH                   0.055   complement factor H isoform a precursor 
PAPPA                 0.052   pregnancy-associated plasma protein A preproprotein ...
CD46                  0.051   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.051   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.051   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.051   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.051   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.050   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.050   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.050   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.050   CD46 antigen, complement regulatory protein isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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