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Search of human proteins with 237649049
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|237649049 small nuclear ribonucleoprotein D2 isoform 2 [Homo
sapiens]
(108 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237649049 small nuclear ribonucleoprotein D2 isoform 2 [Homo ... 219 4e-58
gi|4759158 small nuclear ribonucleoprotein D2 isoform 1 [Homo sa... 219 4e-58
gi|17471847 PREDICTED: hypothetical protein LOC119358 [Homo sapi... 191 1e-49
gi|169201734 PREDICTED: similar to hCG2040270 [Homo sapiens] 187 1e-48
gi|89033538 PREDICTED: similar to hCG2040270 [Homo sapiens] 187 1e-48
gi|7657315 Lsm3 protein [Homo sapiens] 47 4e-06
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 33 0.065
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 33 0.065
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 33 0.065
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 33 0.065
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 33 0.065
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 33 0.065
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 33 0.065
gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform... 30 0.55
gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo s... 29 0.71
gi|9966903 mannosidase, alpha, class 1C, member 1 [Homo sapiens] 28 1.2
gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens] 28 2.1
gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens] 28 2.1
gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo ... 28 2.1
gi|213385305 LSM5 homolog, U6 small nuclear RNA associated isofo... 28 2.1
gi|195222722 LSM5 homolog, U6 small nuclear RNA associated isofo... 28 2.1
gi|110349788 absent, small, or homeotic 1-like [Homo sapiens] 27 4.6
gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens] 27 4.6
gi|153791893 zinc finger, BED-type containing 4 [Homo sapiens] 26 6.0
gi|63998898 Yeast Sps1/Ste20-related kinase 4 isoform 2 [Homo sa... 26 6.0
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 26 7.9
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 26 7.9
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 26 7.9
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 26 7.9
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 26 7.9
>gi|237649049 small nuclear ribonucleoprotein D2 isoform 2 [Homo
sapiens]
Length = 108
Score = 219 bits (558), Expect = 4e-58
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 60
MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV
Sbjct: 1 MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 60
Query: 61 KEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 108
KEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK
Sbjct: 61 KEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 108
>gi|4759158 small nuclear ribonucleoprotein D2 isoform 1 [Homo
sapiens]
Length = 118
Score = 219 bits (558), Expect = 4e-58
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 60
MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV
Sbjct: 11 MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 70
Query: 61 KEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 108
KEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK
Sbjct: 71 KEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 118
>gi|17471847 PREDICTED: hypothetical protein LOC119358 [Homo
sapiens]
Length = 117
Score = 191 bits (484), Expect = 1e-49
Identities = 97/108 (89%), Positives = 99/108 (91%), Gaps = 1/108 (0%)
Query: 1 MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 60
MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCR+N KLLG VKAF RHCNMVLENV
Sbjct: 11 MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMVLENV 70
Query: 61 KEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 108
KE WTEVPKSGKG KKSKPVNKD YIS+MFL GD VIVVLRNPLIA K
Sbjct: 71 KETWTEVPKSGKG-KKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117
>gi|169201734 PREDICTED: similar to hCG2040270 [Homo sapiens]
Length = 117
Score = 187 bits (476), Expect = 1e-48
Identities = 96/108 (88%), Positives = 98/108 (90%), Gaps = 1/108 (0%)
Query: 1 MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 60
MTPEELQKREEEEFNTG LSVLTQSVKNNTQVLINCR+N KLLG VKAF RHCNMVLENV
Sbjct: 11 MTPEELQKREEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMVLENV 70
Query: 61 KEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 108
KE WTEVPKSGKG KKSKPVNKD YIS+MFL GD VIVVLRNPLIA K
Sbjct: 71 KETWTEVPKSGKG-KKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117
>gi|89033538 PREDICTED: similar to hCG2040270 [Homo sapiens]
Length = 117
Score = 187 bits (476), Expect = 1e-48
Identities = 96/108 (88%), Positives = 98/108 (90%), Gaps = 1/108 (0%)
Query: 1 MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 60
MTPEELQKREEEEFNTG LSVLTQSVKNNTQVLINCR+N KLLG VKAF RHCNMVLENV
Sbjct: 11 MTPEELQKREEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMVLENV 70
Query: 61 KEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 108
KE WTEVPKSGKG KKSKPVNKD YIS+MFL GD VIVVLRNPLIA K
Sbjct: 71 KETWTEVPKSGKG-KKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117
>gi|7657315 Lsm3 protein [Homo sapiens]
Length = 102
Score = 46.6 bits (109), Expect = 4e-06
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 18 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 77
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 78 KPVNKDRYISKMFLRGDSVIVV 99
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 32.7 bits (73), Expect = 0.065
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 37 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 96
++ + +G KAFD+H N++L + E PK+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77
Query: 97 I 97
+
Sbjct: 78 V 78
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B'
isoform B [Homo sapiens]
Length = 231
Score = 32.7 bits (73), Expect = 0.065
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 37 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 96
++ + +G KAFD+H N++L + E PK+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77
Query: 97 I 97
+
Sbjct: 78 V 78
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.7 bits (73), Expect = 0.065
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 37 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 96
++ + +G KAFD+H N++L + E PK+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 97 I 97
+
Sbjct: 78 V 78
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.7 bits (73), Expect = 0.065
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 37 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 96
++ + +G KAFD+H N++L + E PK+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 97 I 97
+
Sbjct: 78 V 78
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.7 bits (73), Expect = 0.065
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 37 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 96
++ + +G KAFD+H N++L + E PK+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 97 I 97
+
Sbjct: 78 V 78
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.7 bits (73), Expect = 0.065
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 37 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 96
++ + +G KAFD+H N++L + E PK+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 97 I 97
+
Sbjct: 78 V 78
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 32.7 bits (73), Expect = 0.065
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 37 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 96
++ + +G KAFD+H N++L + E PK+ K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 97 I 97
+
Sbjct: 78 V 78
>gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform a
[Homo sapiens]
Length = 91
Score = 29.6 bits (65), Expect = 0.55
Identities = 18/83 (21%), Positives = 48/83 (57%), Gaps = 13/83 (15%)
Query: 18 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 77
PL ++ + + + +++ +++K+++G + FD NMVLE+V TE + +G++ +
Sbjct: 14 PLELVDKCIGSRIHIVM--KSDKEIVGTLLGFDDFVNMVLEDV----TEFEITPEGRRIT 67
Query: 78 KPVNKDRYISKMFLRGDSVIVVL 100
K + ++ L G+++ +++
Sbjct: 68 K-------LDQILLNGNNITMLV 83
>gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo
sapiens]
Length = 92
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/95 (20%), Positives = 52/95 (54%), Gaps = 15/95 (15%)
Query: 7 QKREEEEFNTGPLSVLTQSVKNNT--QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 64
Q ++ ++ P++++ + ++N + QV + + N ++ G + FD + N+VL++ +E+
Sbjct: 6 QGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI- 64
Query: 65 TEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVV 99
K KS+ + + ++ L+GD++ ++
Sbjct: 65 -------HSKTKSR-----KQLGRIMLKGDNITLL 87
>gi|9966903 mannosidase, alpha, class 1C, member 1 [Homo sapiens]
Length = 630
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 58 ENVKEM----WTEVPKSGKGKKKSKPVNKDRYISKMF--LRGDSVI 97
E +KEM W + GK + +P+ KD Y MF L G +VI
Sbjct: 176 EKIKEMMQFAWQSYKRYAMGKNELRPLTKDGYEGNMFGGLSGATVI 221
>gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens]
Length = 92
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/95 (20%), Positives = 51/95 (53%), Gaps = 15/95 (15%)
Query: 7 QKREEEEFNTGPLSVLTQSVKNNT--QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 64
Q ++ ++ P+S++ + ++N + QV + + N ++ G + FD + N+VL++ +E+
Sbjct: 6 QGQKVQKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI- 64
Query: 65 TEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVV 99
K KS+ + + ++ L+G ++ ++
Sbjct: 65 -------HSKTKSR-----KQLGRIMLKGGNITLL 87
>gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens]
Length = 92
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/95 (20%), Positives = 51/95 (53%), Gaps = 15/95 (15%)
Query: 7 QKREEEEFNTGPLSVLTQSVKNNT--QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 64
Q ++ ++ P+S++ + ++N + QV + + N ++ G + FD + N+VL++ +E+
Sbjct: 6 QGQKVQKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI- 64
Query: 65 TEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVV 99
K KS+ + + ++ L+G ++ ++
Sbjct: 65 -------HSKTKSR-----KQLGRIMLKGGNITLL 87
>gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo
sapiens]
Length = 92
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/95 (20%), Positives = 51/95 (53%), Gaps = 15/95 (15%)
Query: 7 QKREEEEFNTGPLSVLTQSVKNNT--QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 64
Q ++ ++ P+S++ + ++N + QV + + N ++ G + FD + N+VL++ +E+
Sbjct: 6 QGQKVQKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI- 64
Query: 65 TEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVV 99
K KS+ + + ++ L+G ++ ++
Sbjct: 65 -------HSKTKSR-----KQLGRIMLKGGNITLL 87
>gi|213385305 LSM5 homolog, U6 small nuclear RNA associated isoform
b [Homo sapiens]
Length = 62
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/64 (25%), Positives = 38/64 (59%), Gaps = 11/64 (17%)
Query: 37 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 96
+++K+++G + FD NMVLE+V TE + +G++ +K + ++ L G+++
Sbjct: 2 KSDKEIVGTLLGFDDFVNMVLEDV----TEFEITPEGRRITK-------LDQILLNGNNI 50
Query: 97 IVVL 100
+++
Sbjct: 51 TMLV 54
>gi|195222722 LSM5 homolog, U6 small nuclear RNA associated isoform
b [Homo sapiens]
Length = 62
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/64 (25%), Positives = 38/64 (59%), Gaps = 11/64 (17%)
Query: 37 RNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 96
+++K+++G + FD NMVLE+V TE + +G++ +K + ++ L G+++
Sbjct: 2 KSDKEIVGTLLGFDDFVNMVLEDV----TEFEITPEGRRITK-------LDQILLNGNNI 50
Query: 97 IVVL 100
+++
Sbjct: 51 TMLV 54
>gi|110349788 absent, small, or homeotic 1-like [Homo sapiens]
Length = 2964
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 19 LSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKK 75
+ +T SV N T + N K LG V A D+HC + + ++ K KG+K
Sbjct: 662 IHTITPSVVNFTSLFSNKPFLK--LGAVSASDKHCQVAESLSTSLQSKPLKKRKGRK 716
>gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo
sapiens]
Length = 96
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 22 LTQSVKN--NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKP 79
+T +++N N V + + + ++G +K FD+ N++L+ E V S +G ++
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE---RVFSSSQGVEQV-- 55
Query: 80 VNKDRYISKMFLRGDSVIVV 99
+ +RGD+V V+
Sbjct: 56 -----VLGLYIVRGDNVAVI 70
>gi|153791893 zinc finger, BED-type containing 4 [Homo sapiens]
Length = 1171
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 21 VLTQSVKNNTQVLINCRNNKKLLGRVKAFDR-HCNMVLENVKEMWTEVPKSGKGKKKSKP 79
V ++ + ++ V C + L+G H + EN+ E +PKS G ++
Sbjct: 230 VSSEEISSDMSVSEKCGREEALVGSSPHLPALHYDEPAENLAEKSLPLPKSTSGSRRRSA 289
Query: 80 VNKDRYISKM 89
V K Y+S +
Sbjct: 290 VWKHFYLSPL 299
>gi|63998898 Yeast Sps1/Ste20-related kinase 4 isoform 2 [Homo
sapiens]
Length = 510
Score = 26.2 bits (56), Expect = 6.0
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 7 QKREEEEFNTGPLSVLTQSVKNNTQVL-INCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 65
Q+R+ EEF+T + +S+K ++ L I R K L+ K N + +WT
Sbjct: 186 QQRKSEEFSTSHMKYSGRSIKRHSSGLRIYDREEKFLISNEKKIFSE-NSLKSEEPILWT 244
Query: 66 EVPKSGKG 73
+ GKG
Sbjct: 245 KGEILGKG 252
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 25.8 bits (55), Expect = 7.9
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 4 EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE- 62
E QK+E E + L + + LI+ + +K+L ++ D + + E V++
Sbjct: 512 EREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQH 571
Query: 63 MWTEVPKSGKGKKKSK 78
+V K K KKK K
Sbjct: 572 KAAQVAKEKKKKKKKK 587
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 25.8 bits (55), Expect = 7.9
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 4 EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE- 62
E QK+E E + L + + LI+ + +K+L ++ D + + E V++
Sbjct: 512 EREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQH 571
Query: 63 MWTEVPKSGKGKKKSK 78
+V K K KKK K
Sbjct: 572 KAAQVAKEKKKKKKKK 587
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 25.8 bits (55), Expect = 7.9
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 4 EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE- 62
E QK+E E + L + + LI+ + +K+L ++ D + + E V++
Sbjct: 512 EREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQH 571
Query: 63 MWTEVPKSGKGKKKSK 78
+V K K KKK K
Sbjct: 572 KAAQVAKEKKKKKKKK 587
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 25.8 bits (55), Expect = 7.9
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 4 EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE- 62
E QK+E E + L + + LI+ + +K+L ++ D + + E V++
Sbjct: 512 EREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQH 571
Query: 63 MWTEVPKSGKGKKKSK 78
+V K K KKK K
Sbjct: 572 KAAQVAKEKKKKKKKK 587
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 25.8 bits (55), Expect = 7.9
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 4 EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE- 62
E QK+E E + L + + LI+ + +K+L ++ D + + E V++
Sbjct: 512 EREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQH 571
Query: 63 MWTEVPKSGKGKKKSK 78
+V K K KKK K
Sbjct: 572 KAAQVAKEKKKKKKKK 587
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,254,675
Number of Sequences: 37866
Number of extensions: 162300
Number of successful extensions: 427
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 35
length of query: 108
length of database: 18,247,518
effective HSP length: 78
effective length of query: 30
effective length of database: 15,293,970
effective search space: 458819100
effective search space used: 458819100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.