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Search of human proteins with 23510406
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23510406 POMZP3 fusion protein isoform 2 [Homo sapiens]
(115 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23510406 POMZP3 fusion protein isoform 2 [Homo sapiens] 231 9e-62
gi|111160500 POMZP3 fusion protein isoform 1 [Homo sapiens] 231 9e-62
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens] 149 5e-37
gi|239754624 PREDICTED: similar to hCG1998564 [Homo sapiens] 147 1e-36
gi|26051278 nuclear pore membrane protein 121 [Homo sapiens] 147 1e-36
gi|160358850 zona pellucida glycoprotein 3 isoform 1 precursor [... 85 1e-17
gi|38327649 zona pellucida glycoprotein 3 isoform 2 [Homo sapiens] 85 1e-17
gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens] 65 9e-12
gi|239735603 POM121 membrane glycoprotein-like 12 [Homo sapiens] 41 2e-04
gi|50897850 KIAA1914 protein isoform 1 [Homo sapiens] 34 0.022
gi|24308338 KIAA1914 protein isoform 2 [Homo sapiens] 34 0.028
gi|110349788 absent, small, or homeotic 1-like [Homo sapiens] 32 0.14
gi|223941891 protein tyrosine phosphatase, non-receptor type 3 i... 30 0.31
gi|223941888 protein tyrosine phosphatase, non-receptor type 3 i... 30 0.31
gi|223941885 protein tyrosine phosphatase, non-receptor type 3 i... 30 0.31
gi|223941882 protein tyrosine phosphatase, non-receptor type 3 i... 30 0.31
gi|223941879 protein tyrosine phosphatase, non-receptor type 3 i... 30 0.31
gi|223941876 protein tyrosine phosphatase, non-receptor type 3 i... 30 0.31
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 30 0.54
gi|239757688 PREDICTED: similar to POM121-like 1, partial [Homo ... 29 0.70
gi|109637771 calpastatin isoform l [Homo sapiens] 29 0.92
gi|109637769 calpastatin isoform k [Homo sapiens] 29 0.92
gi|109637767 calpastatin isoform j [Homo sapiens] 29 0.92
gi|109637765 calpastatin isoform i [Homo sapiens] 29 0.92
gi|109637763 calpastatin isoform h [Homo sapiens] 29 0.92
gi|109637761 calpastatin isoform g [Homo sapiens] 29 0.92
gi|109637759 calpastatin isoform f [Homo sapiens] 29 0.92
gi|109637757 calpastatin isoform e [Homo sapiens] 29 0.92
gi|27765087 calpastatin isoform c [Homo sapiens] 29 0.92
gi|27765085 calpastatin isoform b [Homo sapiens] 29 0.92
>gi|23510406 POMZP3 fusion protein isoform 2 [Homo sapiens]
Length = 115
Score = 231 bits (589), Expect = 9e-62
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV 60
MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV
Sbjct: 1 MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV 60
Query: 61 EEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM 115
EEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM
Sbjct: 61 EEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM 115
>gi|111160500 POMZP3 fusion protein isoform 1 [Homo sapiens]
Length = 187
Score = 231 bits (589), Expect = 9e-62
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV 60
MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV
Sbjct: 1 MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV 60
Query: 61 EEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM 115
EEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM
Sbjct: 61 EEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM 115
>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
Length = 987
Score = 149 bits (376), Expect = 5e-37
Identities = 82/106 (77%), Positives = 85/106 (80%), Gaps = 12/106 (11%)
Query: 1 MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV 60
MVCSPVT+RIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV
Sbjct: 1 MVCSPVTVRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV 60
Query: 61 EEEDQIFLDGQENKRSCLVDGLTDASSAFK-----------VPRPG 95
EEEDQIFLDGQENKR D SAF+ VP+PG
Sbjct: 61 EEEDQIFLDGQENKRR-RHDSSGSGHSAFEPLVASGVPASFVPKPG 105
>gi|239754624 PREDICTED: similar to hCG1998564 [Homo sapiens]
Length = 526
Score = 147 bits (372), Expect = 1e-36
Identities = 81/106 (76%), Positives = 85/106 (80%), Gaps = 12/106 (11%)
Query: 1 MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV 60
MVCSPVT+RIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEK+KKRTV
Sbjct: 129 MVCSPVTVRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKEKKRTV 188
Query: 61 EEEDQIFLDGQENKRSCLVDGLTDASSAFK-----------VPRPG 95
EEEDQIFLDGQENKR D SAF+ VP+PG
Sbjct: 189 EEEDQIFLDGQENKRR-RHDSSGSGHSAFEPLVANGVPASFVPKPG 233
>gi|26051278 nuclear pore membrane protein 121 [Homo sapiens]
Length = 984
Score = 147 bits (372), Expect = 1e-36
Identities = 81/106 (76%), Positives = 85/106 (80%), Gaps = 12/106 (11%)
Query: 1 MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV 60
MVCSPVT+RIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEK+KKRTV
Sbjct: 1 MVCSPVTVRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKEKKRTV 60
Query: 61 EEEDQIFLDGQENKRSCLVDGLTDASSAFK-----------VPRPG 95
EEEDQIFLDGQENKR D SAF+ VP+PG
Sbjct: 61 EEEDQIFLDGQENKRR-RHDSSGSGHSAFEPLVANGVPASFVPKPG 105
>gi|160358850 zona pellucida glycoprotein 3 isoform 1 precursor
[Homo sapiens]
Length = 424
Score = 84.7 bits (208), Expect = 1e-17
Identities = 39/39 (100%), Positives = 39/39 (100%)
Query: 77 CLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM 115
CLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM
Sbjct: 239 CLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM 277
>gi|38327649 zona pellucida glycoprotein 3 isoform 2 [Homo sapiens]
Length = 373
Score = 84.7 bits (208), Expect = 1e-17
Identities = 39/39 (100%), Positives = 39/39 (100%)
Query: 77 CLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM 115
CLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM
Sbjct: 188 CLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM 226
>gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens]
Length = 1035
Score = 65.5 bits (158), Expect = 9e-12
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 8/102 (7%)
Query: 2 VCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVE 61
+ SPVT+RI PPD+R S PE +I+ PS DPC+KETVL AL+E +K +
Sbjct: 114 IWSPVTIRITPPDQRVPPSTSPEDVIALAGLPPSEELADPCSKETVLRALRECRKGKG-R 172
Query: 62 EEDQIFLDGQENKR-------SCLVDGLTDASSAFKVPRPGP 96
E+ +F + ++KR S + + + VPRPGP
Sbjct: 173 LEEPLFPESLDSKRRSPETRPSAFKPLMKNGTLTSFVPRPGP 214
>gi|239735603 POM121 membrane glycoprotein-like 12 [Homo sapiens]
Length = 296
Score = 40.8 bits (94), Expect = 2e-04
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 4 SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEEE 63
SPVT+ IAPP+R+ S P Q + DPC +ET+L AL + K + +
Sbjct: 135 SPVTIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQ-CPKGSARFD 193
Query: 64 DQIFLDGQENKRSCLVDGLTDASSAFK-----------VPRPGP 96
++ + ++K L SAFK VPRPGP
Sbjct: 194 GPLWFEVSDSKGG--RRNLQPRPSAFKPLSKNGAVASFVPRPGP 235
>gi|50897850 KIAA1914 protein isoform 1 [Homo sapiens]
Length = 818
Score = 34.3 bits (77), Expect = 0.022
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 42 CAKETVLSALKEKKKKRTVEEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQF 101
C + VL++L++K K+ ++EE + G+E++R L + + K GP TL
Sbjct: 703 CTDKEVLASLEQKLKE--IDEECR----GEESRRVDLELSIMEVKDNLKKAEAGPVTLGT 756
Query: 102 TVDVFHFANDS 112
TVD H N S
Sbjct: 757 TVDTTHLENVS 767
>gi|24308338 KIAA1914 protein isoform 2 [Homo sapiens]
Length = 814
Score = 33.9 bits (76), Expect = 0.028
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 42 CAKETVLSALKEKKKKRTVEEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQF 101
C + VL++L++K K+ ++EE + G+E++R L + + K GP TL
Sbjct: 703 CTDKEVLASLEQKLKE--IDEECR----GEESRRVDLELSIMEVKDNLKKAEAGPVTLGT 756
Query: 102 TVDVFHFAN 110
TVD H N
Sbjct: 757 TVDTTHLEN 765
>gi|110349788 absent, small, or homeotic 1-like [Homo sapiens]
Length = 2964
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 35 SSNAPDPCAKETVLSALKEKKKKRTVEEEDQIFLDGQENKRSCLVDGLTDASSAFKV 91
S +P + T++S + + +K T EEED + + N + DGLTDA F V
Sbjct: 19 SRKSPSAISTGTLVSKREVELEKNTKEEEDLRKRNRERNIEAGKDDGLTDAQQQFSV 75
>gi|223941891 protein tyrosine phosphatase, non-receptor type 3
isoform 6 [Homo sapiens]
Length = 581
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 28 SSTLSSPSSNAPDPCAKETV----LSALKEKKKKRTVEEEDQIFLDGQENKRSCLV 79
SS+ SPSSNAP C+ + V L K + E+ Q + D +N S LV
Sbjct: 122 SSSSVSPSSNAPGSCSPDGVDQQLLDDFHRVTKGGSTEDASQYYCDKNDNGDSYLV 177
>gi|223941888 protein tyrosine phosphatase, non-receptor type 3
isoform 5 [Homo sapiens]
Length = 626
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 28 SSTLSSPSSNAPDPCAKETV----LSALKEKKKKRTVEEEDQIFLDGQENKRSCLV 79
SS+ SPSSNAP C+ + V L K + E+ Q + D +N S LV
Sbjct: 167 SSSSVSPSSNAPGSCSPDGVDQQLLDDFHRVTKGGSTEDASQYYCDKNDNGDSYLV 222
>gi|223941885 protein tyrosine phosphatase, non-receptor type 3
isoform 4 [Homo sapiens]
Length = 737
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 28 SSTLSSPSSNAPDPCAKETV----LSALKEKKKKRTVEEEDQIFLDGQENKRSCLV 79
SS+ SPSSNAP C+ + V L K + E+ Q + D +N S LV
Sbjct: 278 SSSSVSPSSNAPGSCSPDGVDQQLLDDFHRVTKGGSTEDASQYYCDKNDNGDSYLV 333
>gi|223941882 protein tyrosine phosphatase, non-receptor type 3
isoform 3 [Homo sapiens]
Length = 782
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 28 SSTLSSPSSNAPDPCAKETV----LSALKEKKKKRTVEEEDQIFLDGQENKRSCLV 79
SS+ SPSSNAP C+ + V L K + E+ Q + D +N S LV
Sbjct: 323 SSSSVSPSSNAPGSCSPDGVDQQLLDDFHRVTKGGSTEDASQYYCDKNDNGDSYLV 378
>gi|223941879 protein tyrosine phosphatase, non-receptor type 3
isoform 2 [Homo sapiens]
Length = 868
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 28 SSTLSSPSSNAPDPCAKETV----LSALKEKKKKRTVEEEDQIFLDGQENKRSCLV 79
SS+ SPSSNAP C+ + V L K + E+ Q + D +N S LV
Sbjct: 409 SSSSVSPSSNAPGSCSPDGVDQQLLDDFHRVTKGGSTEDASQYYCDKNDNGDSYLV 464
>gi|223941876 protein tyrosine phosphatase, non-receptor type 3
isoform 1 [Homo sapiens]
Length = 913
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 28 SSTLSSPSSNAPDPCAKETV----LSALKEKKKKRTVEEEDQIFLDGQENKRSCLV 79
SS+ SPSSNAP C+ + V L K + E+ Q + D +N S LV
Sbjct: 454 SSSSVSPSSNAPGSCSPDGVDQQLLDDFHRVTKGGSTEDASQYYCDKNDNGDSYLV 509
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 12 PPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEEEDQIFLDGQ 71
PP RR S P ++++ PS P P T L + KE +K+ ++ + Q
Sbjct: 681 PPVRRASAGPAPGPVVTAEGLHPS--LPSPTGNSTPLGSSKETRKQEKERQKQEKERQKQ 738
Query: 72 ENKR 75
E +R
Sbjct: 739 EKER 742
>gi|239757688 PREDICTED: similar to POM121-like 1, partial [Homo
sapiens]
Length = 346
Score = 29.3 bits (64), Expect = 0.70
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 38 APDPCAKETVLSALKEKKKKRTVEEEDQIFLDGQENKRSCLVDGLTDASSAFK------- 90
+PD C + VL ALKE +++D + ++R + + DA SAF+
Sbjct: 22 SPDLCPGKIVLRALKESGAGMPEQDKDPRVQENPGDQRR-VPEVTGDAPSAFRPLRDNGG 80
Query: 91 ----VPRPGP 96
VPRPGP
Sbjct: 81 LSPFVPRPGP 90
>gi|109637771 calpastatin isoform l [Homo sapiens]
Length = 654
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 4 SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
S +++ APP+ + +P+ + + S DP + V+ +KEK K+ E+
Sbjct: 357 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 415
>gi|109637769 calpastatin isoform k [Homo sapiens]
Length = 673
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 4 SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
S +++ APP+ + +P+ + + S DP + V+ +KEK K+ E+
Sbjct: 376 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 434
>gi|109637767 calpastatin isoform j [Homo sapiens]
Length = 667
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 4 SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
S +++ APP+ + +P+ + + S DP + V+ +KEK K+ E+
Sbjct: 370 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 428
>gi|109637765 calpastatin isoform i [Homo sapiens]
Length = 708
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 4 SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
S +++ APP+ + +P+ + + S DP + V+ +KEK K+ E+
Sbjct: 411 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 469
>gi|109637763 calpastatin isoform h [Homo sapiens]
Length = 769
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 4 SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
S +++ APP+ + +P+ + + S DP + V+ +KEK K+ E+
Sbjct: 472 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 530
>gi|109637761 calpastatin isoform g [Homo sapiens]
Length = 772
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 4 SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
S +++ APP+ + +P+ + + S DP + V+ +KEK K+ E+
Sbjct: 475 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 533
>gi|109637759 calpastatin isoform f [Homo sapiens]
Length = 750
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 4 SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
S +++ APP+ + +P+ + + S DP + V+ +KEK K+ E+
Sbjct: 453 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 511
>gi|109637757 calpastatin isoform e [Homo sapiens]
Length = 756
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 4 SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
S +++ APP+ + +P+ + + S DP + V+ +KEK K+ E+
Sbjct: 459 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 517
>gi|27765087 calpastatin isoform c [Homo sapiens]
Length = 430
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 4 SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
S +++ APP+ + +P+ + + S DP + V+ +KEK K+ E+
Sbjct: 134 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 192
>gi|27765085 calpastatin isoform b [Homo sapiens]
Length = 686
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 4 SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
S +++ APP+ + +P+ + + S DP + V+ +KEK K+ E+
Sbjct: 389 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 447
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,091,381
Number of Sequences: 37866
Number of extensions: 215620
Number of successful extensions: 1110
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1051
Number of HSP's gapped (non-prelim): 106
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.