Guide to the Human Genome
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Search of human proteins with 23510406

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|23510406 POMZP3 fusion protein isoform 2 [Homo sapiens]
         (115 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|23510406 POMZP3 fusion protein isoform 2 [Homo sapiens]            231   9e-62
gi|111160500 POMZP3 fusion protein isoform 1 [Homo sapiens]           231   9e-62
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]   149   5e-37
gi|239754624 PREDICTED: similar to hCG1998564 [Homo sapiens]          147   1e-36
gi|26051278 nuclear pore membrane protein 121 [Homo sapiens]          147   1e-36
gi|160358850 zona pellucida glycoprotein 3 isoform 1 precursor [...    85   1e-17
gi|38327649 zona pellucida glycoprotein 3 isoform 2 [Homo sapiens]     85   1e-17
gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens]        65   9e-12
gi|239735603 POM121 membrane glycoprotein-like 12 [Homo sapiens]       41   2e-04
gi|50897850 KIAA1914 protein isoform 1 [Homo sapiens]                  34   0.022
gi|24308338 KIAA1914 protein isoform 2 [Homo sapiens]                  34   0.028
gi|110349788 absent, small, or homeotic 1-like [Homo sapiens]          32   0.14 
gi|223941891 protein tyrosine phosphatase, non-receptor type 3 i...    30   0.31 
gi|223941888 protein tyrosine phosphatase, non-receptor type 3 i...    30   0.31 
gi|223941885 protein tyrosine phosphatase, non-receptor type 3 i...    30   0.31 
gi|223941882 protein tyrosine phosphatase, non-receptor type 3 i...    30   0.31 
gi|223941879 protein tyrosine phosphatase, non-receptor type 3 i...    30   0.31 
gi|223941876 protein tyrosine phosphatase, non-receptor type 3 i...    30   0.31 
gi|167614488 TBC1 domain family, member 10B [Homo sapiens]             30   0.54 
gi|239757688 PREDICTED: similar to POM121-like 1, partial [Homo ...    29   0.70 
gi|109637771 calpastatin isoform l [Homo sapiens]                      29   0.92 
gi|109637769 calpastatin isoform k [Homo sapiens]                      29   0.92 
gi|109637767 calpastatin isoform j [Homo sapiens]                      29   0.92 
gi|109637765 calpastatin isoform i [Homo sapiens]                      29   0.92 
gi|109637763 calpastatin isoform h [Homo sapiens]                      29   0.92 
gi|109637761 calpastatin isoform g [Homo sapiens]                      29   0.92 
gi|109637759 calpastatin isoform f [Homo sapiens]                      29   0.92 
gi|109637757 calpastatin isoform e [Homo sapiens]                      29   0.92 
gi|27765087 calpastatin isoform c [Homo sapiens]                       29   0.92 
gi|27765085 calpastatin isoform b [Homo sapiens]                       29   0.92 

>gi|23510406 POMZP3 fusion protein isoform 2 [Homo sapiens]
          Length = 115

 Score =  231 bits (589), Expect = 9e-62
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV 60
           MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV
Sbjct: 1   MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV 60

Query: 61  EEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM 115
           EEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM
Sbjct: 61  EEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM 115


>gi|111160500 POMZP3 fusion protein isoform 1 [Homo sapiens]
          Length = 187

 Score =  231 bits (589), Expect = 9e-62
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV 60
           MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV
Sbjct: 1   MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV 60

Query: 61  EEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM 115
           EEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM
Sbjct: 61  EEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM 115


>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
          Length = 987

 Score =  149 bits (376), Expect = 5e-37
 Identities = 82/106 (77%), Positives = 85/106 (80%), Gaps = 12/106 (11%)

Query: 1   MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV 60
           MVCSPVT+RIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV
Sbjct: 1   MVCSPVTVRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV 60

Query: 61  EEEDQIFLDGQENKRSCLVDGLTDASSAFK-----------VPRPG 95
           EEEDQIFLDGQENKR    D      SAF+           VP+PG
Sbjct: 61  EEEDQIFLDGQENKRR-RHDSSGSGHSAFEPLVASGVPASFVPKPG 105


>gi|239754624 PREDICTED: similar to hCG1998564 [Homo sapiens]
          Length = 526

 Score =  147 bits (372), Expect = 1e-36
 Identities = 81/106 (76%), Positives = 85/106 (80%), Gaps = 12/106 (11%)

Query: 1   MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV 60
           MVCSPVT+RIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEK+KKRTV
Sbjct: 129 MVCSPVTVRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKEKKRTV 188

Query: 61  EEEDQIFLDGQENKRSCLVDGLTDASSAFK-----------VPRPG 95
           EEEDQIFLDGQENKR    D      SAF+           VP+PG
Sbjct: 189 EEEDQIFLDGQENKRR-RHDSSGSGHSAFEPLVANGVPASFVPKPG 233


>gi|26051278 nuclear pore membrane protein 121 [Homo sapiens]
          Length = 984

 Score =  147 bits (372), Expect = 1e-36
 Identities = 81/106 (76%), Positives = 85/106 (80%), Gaps = 12/106 (11%)

Query: 1   MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTV 60
           MVCSPVT+RIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEK+KKRTV
Sbjct: 1   MVCSPVTVRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKEKKRTV 60

Query: 61  EEEDQIFLDGQENKRSCLVDGLTDASSAFK-----------VPRPG 95
           EEEDQIFLDGQENKR    D      SAF+           VP+PG
Sbjct: 61  EEEDQIFLDGQENKRR-RHDSSGSGHSAFEPLVANGVPASFVPKPG 105


>gi|160358850 zona pellucida glycoprotein 3 isoform 1 precursor
           [Homo sapiens]
          Length = 424

 Score = 84.7 bits (208), Expect = 1e-17
 Identities = 39/39 (100%), Positives = 39/39 (100%)

Query: 77  CLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM 115
           CLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM
Sbjct: 239 CLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM 277


>gi|38327649 zona pellucida glycoprotein 3 isoform 2 [Homo sapiens]
          Length = 373

 Score = 84.7 bits (208), Expect = 1e-17
 Identities = 39/39 (100%), Positives = 39/39 (100%)

Query: 77  CLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM 115
           CLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM
Sbjct: 188 CLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNM 226


>gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens]
          Length = 1035

 Score = 65.5 bits (158), Expect = 9e-12
 Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 8/102 (7%)

Query: 2   VCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVE 61
           + SPVT+RI PPD+R   S  PE +I+     PS    DPC+KETVL AL+E +K +   
Sbjct: 114 IWSPVTIRITPPDQRVPPSTSPEDVIALAGLPPSEELADPCSKETVLRALRECRKGKG-R 172

Query: 62  EEDQIFLDGQENKR-------SCLVDGLTDASSAFKVPRPGP 96
            E+ +F +  ++KR       S     + + +    VPRPGP
Sbjct: 173 LEEPLFPESLDSKRRSPETRPSAFKPLMKNGTLTSFVPRPGP 214


>gi|239735603 POM121 membrane glycoprotein-like 12 [Homo sapiens]
          Length = 296

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 14/104 (13%)

Query: 4   SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEEE 63
           SPVT+ IAPP+R+ S    P Q         +    DPC +ET+L AL +   K +   +
Sbjct: 135 SPVTIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQ-CPKGSARFD 193

Query: 64  DQIFLDGQENKRSCLVDGLTDASSAFK-----------VPRPGP 96
             ++ +  ++K       L    SAFK           VPRPGP
Sbjct: 194 GPLWFEVSDSKGG--RRNLQPRPSAFKPLSKNGAVASFVPRPGP 235


>gi|50897850 KIAA1914 protein isoform 1 [Homo sapiens]
          Length = 818

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 42  CAKETVLSALKEKKKKRTVEEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQF 101
           C  + VL++L++K K+  ++EE +    G+E++R  L   + +     K    GP TL  
Sbjct: 703 CTDKEVLASLEQKLKE--IDEECR----GEESRRVDLELSIMEVKDNLKKAEAGPVTLGT 756

Query: 102 TVDVFHFANDS 112
           TVD  H  N S
Sbjct: 757 TVDTTHLENVS 767


>gi|24308338 KIAA1914 protein isoform 2 [Homo sapiens]
          Length = 814

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 42  CAKETVLSALKEKKKKRTVEEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQF 101
           C  + VL++L++K K+  ++EE +    G+E++R  L   + +     K    GP TL  
Sbjct: 703 CTDKEVLASLEQKLKE--IDEECR----GEESRRVDLELSIMEVKDNLKKAEAGPVTLGT 756

Query: 102 TVDVFHFAN 110
           TVD  H  N
Sbjct: 757 TVDTTHLEN 765


>gi|110349788 absent, small, or homeotic 1-like [Homo sapiens]
          Length = 2964

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 19/57 (33%), Positives = 29/57 (50%)

Query: 35 SSNAPDPCAKETVLSALKEKKKKRTVEEEDQIFLDGQENKRSCLVDGLTDASSAFKV 91
          S  +P   +  T++S  + + +K T EEED    + + N  +   DGLTDA   F V
Sbjct: 19 SRKSPSAISTGTLVSKREVELEKNTKEEEDLRKRNRERNIEAGKDDGLTDAQQQFSV 75


>gi|223941891 protein tyrosine phosphatase, non-receptor type 3
           isoform 6 [Homo sapiens]
          Length = 581

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 28  SSTLSSPSSNAPDPCAKETV----LSALKEKKKKRTVEEEDQIFLDGQENKRSCLV 79
           SS+  SPSSNAP  C+ + V    L       K  + E+  Q + D  +N  S LV
Sbjct: 122 SSSSVSPSSNAPGSCSPDGVDQQLLDDFHRVTKGGSTEDASQYYCDKNDNGDSYLV 177


>gi|223941888 protein tyrosine phosphatase, non-receptor type 3
           isoform 5 [Homo sapiens]
          Length = 626

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 28  SSTLSSPSSNAPDPCAKETV----LSALKEKKKKRTVEEEDQIFLDGQENKRSCLV 79
           SS+  SPSSNAP  C+ + V    L       K  + E+  Q + D  +N  S LV
Sbjct: 167 SSSSVSPSSNAPGSCSPDGVDQQLLDDFHRVTKGGSTEDASQYYCDKNDNGDSYLV 222


>gi|223941885 protein tyrosine phosphatase, non-receptor type 3
           isoform 4 [Homo sapiens]
          Length = 737

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 28  SSTLSSPSSNAPDPCAKETV----LSALKEKKKKRTVEEEDQIFLDGQENKRSCLV 79
           SS+  SPSSNAP  C+ + V    L       K  + E+  Q + D  +N  S LV
Sbjct: 278 SSSSVSPSSNAPGSCSPDGVDQQLLDDFHRVTKGGSTEDASQYYCDKNDNGDSYLV 333


>gi|223941882 protein tyrosine phosphatase, non-receptor type 3
           isoform 3 [Homo sapiens]
          Length = 782

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 28  SSTLSSPSSNAPDPCAKETV----LSALKEKKKKRTVEEEDQIFLDGQENKRSCLV 79
           SS+  SPSSNAP  C+ + V    L       K  + E+  Q + D  +N  S LV
Sbjct: 323 SSSSVSPSSNAPGSCSPDGVDQQLLDDFHRVTKGGSTEDASQYYCDKNDNGDSYLV 378


>gi|223941879 protein tyrosine phosphatase, non-receptor type 3
           isoform 2 [Homo sapiens]
          Length = 868

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 28  SSTLSSPSSNAPDPCAKETV----LSALKEKKKKRTVEEEDQIFLDGQENKRSCLV 79
           SS+  SPSSNAP  C+ + V    L       K  + E+  Q + D  +N  S LV
Sbjct: 409 SSSSVSPSSNAPGSCSPDGVDQQLLDDFHRVTKGGSTEDASQYYCDKNDNGDSYLV 464


>gi|223941876 protein tyrosine phosphatase, non-receptor type 3
           isoform 1 [Homo sapiens]
          Length = 913

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 28  SSTLSSPSSNAPDPCAKETV----LSALKEKKKKRTVEEEDQIFLDGQENKRSCLV 79
           SS+  SPSSNAP  C+ + V    L       K  + E+  Q + D  +N  S LV
Sbjct: 454 SSSSVSPSSNAPGSCSPDGVDQQLLDDFHRVTKGGSTEDASQYYCDKNDNGDSYLV 509


>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
          Length = 808

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 12  PPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEEEDQIFLDGQ 71
           PP RR S    P  ++++    PS   P P    T L + KE +K+    ++ +     Q
Sbjct: 681 PPVRRASAGPAPGPVVTAEGLHPS--LPSPTGNSTPLGSSKETRKQEKERQKQEKERQKQ 738

Query: 72  ENKR 75
           E +R
Sbjct: 739 EKER 742


>gi|239757688 PREDICTED: similar to POM121-like 1, partial [Homo
          sapiens]
          Length = 346

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 12/70 (17%)

Query: 38 APDPCAKETVLSALKEKKKKRTVEEEDQIFLDGQENKRSCLVDGLTDASSAFK------- 90
          +PD C  + VL ALKE       +++D    +   ++R  + +   DA SAF+       
Sbjct: 22 SPDLCPGKIVLRALKESGAGMPEQDKDPRVQENPGDQRR-VPEVTGDAPSAFRPLRDNGG 80

Query: 91 ----VPRPGP 96
              VPRPGP
Sbjct: 81 LSPFVPRPGP 90


>gi|109637771 calpastatin isoform l [Homo sapiens]
          Length = 654

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 4   SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
           S  +++ APP+    +  +P+  + +   S      DP   + V+  +KEK K+   E+
Sbjct: 357 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 415


>gi|109637769 calpastatin isoform k [Homo sapiens]
          Length = 673

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 4   SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
           S  +++ APP+    +  +P+  + +   S      DP   + V+  +KEK K+   E+
Sbjct: 376 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 434


>gi|109637767 calpastatin isoform j [Homo sapiens]
          Length = 667

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 4   SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
           S  +++ APP+    +  +P+  + +   S      DP   + V+  +KEK K+   E+
Sbjct: 370 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 428


>gi|109637765 calpastatin isoform i [Homo sapiens]
          Length = 708

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 4   SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
           S  +++ APP+    +  +P+  + +   S      DP   + V+  +KEK K+   E+
Sbjct: 411 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 469


>gi|109637763 calpastatin isoform h [Homo sapiens]
          Length = 769

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 4   SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
           S  +++ APP+    +  +P+  + +   S      DP   + V+  +KEK K+   E+
Sbjct: 472 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 530


>gi|109637761 calpastatin isoform g [Homo sapiens]
          Length = 772

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 4   SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
           S  +++ APP+    +  +P+  + +   S      DP   + V+  +KEK K+   E+
Sbjct: 475 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 533


>gi|109637759 calpastatin isoform f [Homo sapiens]
          Length = 750

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 4   SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
           S  +++ APP+    +  +P+  + +   S      DP   + V+  +KEK K+   E+
Sbjct: 453 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 511


>gi|109637757 calpastatin isoform e [Homo sapiens]
          Length = 756

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 4   SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
           S  +++ APP+    +  +P+  + +   S      DP   + V+  +KEK K+   E+
Sbjct: 459 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 517


>gi|27765087 calpastatin isoform c [Homo sapiens]
          Length = 430

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 4   SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
           S  +++ APP+    +  +P+  + +   S      DP   + V+  +KEK K+   E+
Sbjct: 134 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 192


>gi|27765085 calpastatin isoform b [Homo sapiens]
          Length = 686

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 4   SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEE 62
           S  +++ APP+    +  +P+  + +   S      DP   + V+  +KEK K+   E+
Sbjct: 389 SMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREK 447


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,091,381
Number of Sequences: 37866
Number of extensions: 215620
Number of successful extensions: 1110
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1051
Number of HSP's gapped (non-prelim): 106
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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