Guide to the Human Genome
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Name: POM121L12 Sequence: fasta or formatted (296aa) NCBI GI: 239735603
Description:

POM121 membrane glycoprotein-like 12

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         30           3
 C cysteine            2.7          8           1
 D aspartate           3.4         10           2
 E glutamate           4.4         13           1
 F phenylalanine       3.4         10           1
 G glycine             9.1         27           2
 H histidine           0.7          2           1
 I isoleucine          1.7          5           1
 K lysine              2.7          8           1
 L leucine             8.1         24           2
 M methionine          1.0          3           1
 N asparagine          1.4          4           1
 P proline            13.9         41           2
 Q glutamine           5.4         16           1
 R arginine            7.8         23           2
 S serine             10.8         32           1
 T threonine           4.7         14           2
 V valine              4.1         12           2
 W tryptophan          4.4         13           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   POM121 membrane glycoprotein-like 12 
POM121L2              0.203   POM121 membrane glycoprotein-like 2 
LOC100292653          0.069   PREDICTED: similar to hCG1998564 
POM121                0.061   nuclear pore membrane protein 121 
POM121C               0.058   POM121 membrane glycoprotein (rat)-like 
LOC100294020          0.036   PREDICTED: similar to POM121-like 1, partial 
POMZP3                0.026   POMZP3 fusion protein isoform 2 
POMZP3                0.026   POMZP3 fusion protein isoform 1 
LOC729915             0.020   PREDICTED: similar to Putative POM121-like protein ...
PRR14                 0.020   proline rich 14 
LOC100133280          0.017   PREDICTED: similar to Putative POM121-like protein ...
SRCAP                 0.017   Snf2-related CBP activator protein 
PSD4                  0.017   pleckstrin and Sec7 domain containing 4 
C15orf2               0.017   hypothetical protein LOC23742 
GNAS                  0.017   GNAS complex locus alex 
RFX1                  0.015   regulatory factor X1 
MUC16                 0.013   mucin 16 
LOC100128392          0.013   PREDICTED: hypothetical protein 
LOC100288796          0.013   PREDICTED: hypothetical protein 
LOC100128392          0.013   PREDICTED: hypothetical protein 
LOC100288796          0.013   PREDICTED: hypothetical protein XP_002343710 
LOC100128392          0.013   PREDICTED: hypothetical protein 
PCLO                  0.013   piccolo isoform 2 
PCLO                  0.013   piccolo isoform 1 
CD2                   0.013   CD2 molecule 
COL17A1               0.013   alpha 1 type XVII collagen 
NACA                  0.013   nascent polypeptide-associated complex alpha subuni...
OTOG                  0.012   PREDICTED: otogelin isoform 1 
OTOG                  0.012   PREDICTED: otogelin isoform 2 
OTOG                  0.012   PREDICTED: otogelin isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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