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Search of human proteins with 23510400
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23510400 pantothenate kinase 1 isoform alpha [Homo sapiens]
(598 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23510400 pantothenate kinase 1 isoform alpha [Homo sapiens] 1229 0.0
gi|23510402 pantothenate kinase 1 isoform beta [Homo sapiens] 741 0.0
gi|85838513 pantothenate kinase 2 isoform 1 preproprotein [Homo ... 633 0.0
gi|13375789 pantothenate kinase 3 [Homo sapiens] 600 e-171
gi|23510398 pantothenate kinase 1 isoform gamma [Homo sapiens] 512 e-145
gi|24430175 pantothenate kinase 2 isoform 2 [Homo sapiens] 473 e-133
gi|24430167 pantothenate kinase 2 isoform 2 [Homo sapiens] 473 e-133
gi|8922665 pantothenate kinase 4 [Homo sapiens] 210 3e-54
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 45 1e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 45 2e-04
gi|21704281 junctophilin 2 isoform 1 [Homo sapiens] 45 2e-04
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 45 2e-04
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 45 2e-04
gi|61699226 pulmonary surfactant-associated protein D precursor ... 45 2e-04
gi|76781485 vascular endothelial growth factor A isoform f precu... 44 3e-04
gi|76781484 vascular endothelial growth factor A isoform e precu... 44 3e-04
gi|76781483 vascular endothelial growth factor A isoform d precu... 44 3e-04
gi|76781482 vascular endothelial growth factor A isoform c precu... 44 3e-04
gi|76781481 vascular endothelial growth factor A isoform b precu... 44 3e-04
gi|76781480 vascular endothelial growth factor A isoform a precu... 44 3e-04
gi|76781487 vascular endothelial growth factor A isoform g precu... 44 3e-04
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 44 4e-04
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 44 4e-04
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 44 4e-04
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 44 4e-04
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 43 7e-04
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 43 7e-04
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 43 7e-04
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 43 0.001
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 43 0.001
>gi|23510400 pantothenate kinase 1 isoform alpha [Homo sapiens]
Length = 598
Score = 1229 bits (3179), Expect = 0.0
Identities = 598/598 (100%), Positives = 598/598 (100%)
Query: 1 MLKLVGGGGGQDWACSVAGTSLGGEEAAFEVARPGDQGKAGGGSPGWGCAGIPDSAPGAG 60
MLKLVGGGGGQDWACSVAGTSLGGEEAAFEVARPGDQGKAGGGSPGWGCAGIPDSAPGAG
Sbjct: 1 MLKLVGGGGGQDWACSVAGTSLGGEEAAFEVARPGDQGKAGGGSPGWGCAGIPDSAPGAG 60
Query: 61 VLQAGAVGPARGGQGAEEVGESAGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDL 120
VLQAGAVGPARGGQGAEEVGESAGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDL
Sbjct: 61 VLQAGAVGPARGGQGAEEVGESAGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDL 120
Query: 121 QRGRLSRGPRTAPPAPGMGDRSGQQERSVPHSPGAPVGTSAAAVNGLLHNGFHPPPVQPP 180
QRGRLSRGPRTAPPAPGMGDRSGQQERSVPHSPGAPVGTSAAAVNGLLHNGFHPPPVQPP
Sbjct: 121 QRGRLSRGPRTAPPAPGMGDRSGQQERSVPHSPGAPVGTSAAAVNGLLHNGFHPPPVQPP 180
Query: 181 HVCSRGPVGGSDAAPQRLPLLPELQPQPLLPQHDSPAKKCRLRRRMDSGRKNRPPFPWFG 240
HVCSRGPVGGSDAAPQRLPLLPELQPQPLLPQHDSPAKKCRLRRRMDSGRKNRPPFPWFG
Sbjct: 181 HVCSRGPVGGSDAAPQRLPLLPELQPQPLLPQHDSPAKKCRLRRRMDSGRKNRPPFPWFG 240
Query: 241 MDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNLTM 300
MDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNLTM
Sbjct: 241 MDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNLTM 300
Query: 301 CGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIADLQLHK 360
CGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIADLQLHK
Sbjct: 301 CGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIADLQLHK 360
Query: 361 LDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSGVS 420
LDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSGVS
Sbjct: 361 LDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSGVS 420
Query: 421 ILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYG 480
ILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYG
Sbjct: 421 ILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYG 480
Query: 481 GDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITNNIGSIARMCALNENID 540
GDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITNNIGSIARMCALNENID
Sbjct: 481 GDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITNNIGSIARMCALNENID 540
Query: 541 RVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLELFKMTDDK 598
RVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLELFKMTDDK
Sbjct: 541 RVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLELFKMTDDK 598
>gi|23510402 pantothenate kinase 1 isoform beta [Homo sapiens]
Length = 373
Score = 741 bits (1912), Expect = 0.0
Identities = 365/374 (97%), Positives = 369/374 (98%), Gaps = 2/374 (0%)
Query: 225 RMDSGRKNRPPFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYG 284
++ +G+K FPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYG
Sbjct: 2 KLINGKKQT--FPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYG 59
Query: 285 KTGIRDVHLELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAF 344
KTGIRDVHLELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAF
Sbjct: 60 KTGIRDVHLELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAF 119
Query: 345 KFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCL 404
KFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCL
Sbjct: 120 KFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCL 179
Query: 405 DNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAA 464
DNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAA
Sbjct: 180 DNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAA 239
Query: 465 KGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITN 524
KGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITN
Sbjct: 240 KGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITN 299
Query: 525 NIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGA 584
NIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGA
Sbjct: 300 NIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGA 359
Query: 585 VGALLELFKMTDDK 598
VGALLELFKMTDDK
Sbjct: 360 VGALLELFKMTDDK 373
>gi|85838513 pantothenate kinase 2 isoform 1 preproprotein [Homo
sapiens]
Length = 570
Score = 633 bits (1632), Expect = 0.0
Identities = 305/372 (81%), Positives = 341/372 (91%)
Query: 223 RRRMDSGRKNRPPFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTA 282
R+R++S RK RP FPWFG+DIGGTLVKLVYFEPKDITAEEE+EEVE+LKSIRKYLTSN A
Sbjct: 198 RQRVESLRKKRPLFPWFGLDIGGTLVKLVYFEPKDITAEEEEEEVESLKSIRKYLTSNVA 257
Query: 283 YGKTGIRDVHLELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGG 342
YG TGIRDVHLELK+LT+CGRKGNLHFIRFP+ M FIQMG +KNFSSLHT CATGGG
Sbjct: 258 YGSTGIRDVHLELKDLTLCGRKGNLHFIRFPTHDMPAFIQMGRDKNFSSLHTVFCATGGG 317
Query: 343 AFKFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPY 402
A+KFE+DF I DLQL KLDELDCLI+G+LY+DSVGFNG+ +CYYFENP + E CQK P+
Sbjct: 318 AYKFEQDFLTIGDLQLCKLDELDCLIKGILYIDSVGFNGRSQCYYFENPADSEKCQKLPF 377
Query: 403 CLDNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEM 462
L NPYP+LLVN+GSGVSILAVYSKDNYKRVTGTSLGGGTF GLCCLLTGC TFEEALEM
Sbjct: 378 DLKNPYPLLLVNIGSGVSILAVYSKDNYKRVTGTSLGGGTFFGLCCLLTGCTTFEEALEM 437
Query: 463 AAKGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTI 522
A++GDST VDKLV+DIYGGDYERFGL G AVASSFGNMMSKEKR+++SKEDLARATL+TI
Sbjct: 438 ASRGDSTKVDKLVRDIYGGDYERFGLPGWAVASSFGNMMSKEKREAVSKEDLARATLITI 497
Query: 523 TNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYF 582
TNNIGSIARMCALNENI++VVFVGNFLRIN ++M+LLAYA+D+WSKGQLKALF EHEGYF
Sbjct: 498 TNNIGSIARMCALNENINQVVFVGNFLRINTIAMRLLAYALDYWSKGQLKALFSEHEGYF 557
Query: 583 GAVGALLELFKM 594
GAVGALLEL K+
Sbjct: 558 GAVGALLELLKI 569
>gi|13375789 pantothenate kinase 3 [Homo sapiens]
Length = 370
Score = 600 bits (1547), Expect = e-171
Identities = 290/359 (80%), Positives = 326/359 (90%)
Query: 233 RPPFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVH 292
+P FPWFGMDIGGTLVKL YFEP DITAEEEQEEVE+LKSIRKYLTSN AYG TGIRDVH
Sbjct: 8 KPSFPWFGMDIGGTLVKLSYFEPIDITAEEEQEEVESLKSIRKYLTSNVAYGSTGIRDVH 67
Query: 293 LELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRM 352
LELK+LT+ GR+GNLHFIRFP+ + FIQMG +KNFS+L T LCATGGGA+KFE+DFR
Sbjct: 68 LELKDLTLFGRRGNLHFIRFPTQDLPTFIQMGRDKNFSTLQTVLCATGGGAYKFEKDFRT 127
Query: 353 IADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLL 412
I +L LHKLDELDCL++GLLY+DSV FNG+ ECYYF N + PE CQK P+ LD+PYP+L+
Sbjct: 128 IGNLHLHKLDELDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLLV 187
Query: 413 VNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVD 472
VN+GSGVSILAV+SKDNYKRVTGTSLGGGTFLGLC LLTGCE+FEEALEMA+KGDST D
Sbjct: 188 VNIGSGVSILAVHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQAD 247
Query: 473 KLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITNNIGSIARM 532
KLV+DIYGGDYERFGL G AVASSFGNM+ KEKR+S+SKEDLARATLVTITNNIGS+ARM
Sbjct: 248 KLVRDIYGGDYERFGLPGWAVASSFGNMIYKEKRESVSKEDLARATLVTITNNIGSVARM 307
Query: 533 CALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 591
CA+NE I+RVVFVGNFLR+N +SMKLLAYA+D+WSKGQLKALFLEHEGYFGAVGALL L
Sbjct: 308 CAVNEKINRVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKALFLEHEGYFGAVGALLGL 366
>gi|23510398 pantothenate kinase 1 isoform gamma [Homo sapiens]
Length = 314
Score = 512 bits (1319), Expect = e-145
Identities = 269/374 (71%), Positives = 285/374 (76%), Gaps = 61/374 (16%)
Query: 225 RMDSGRKNRPPFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYG 284
++ +G+K FPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYG
Sbjct: 2 KLINGKKQT--FPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYG 59
Query: 285 KTGIRDVHLELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAF 344
KTGIRDVHLELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAF
Sbjct: 60 KTGIRDVHLELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAF 119
Query: 345 KFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCL 404
KFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCL
Sbjct: 120 KFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCL 179
Query: 405 DNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAA 464
DNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTS G +
Sbjct: 180 DNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSFGN-------------------MMSKE 220
Query: 465 KGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITN 524
K DS + + L + + ++ G++ A + +
Sbjct: 221 KRDSISKEDLARATL-----------VTITNNIGSI----------------ARMCALNE 253
Query: 525 NIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGA 584
NI + VFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGA
Sbjct: 254 NIDRV-------------VFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGA 300
Query: 585 VGALLELFKMTDDK 598
VGALLELFKMTDDK
Sbjct: 301 VGALLELFKMTDDK 314
>gi|24430175 pantothenate kinase 2 isoform 2 [Homo sapiens]
Length = 279
Score = 473 bits (1216), Expect = e-133
Identities = 227/278 (81%), Positives = 254/278 (91%)
Query: 317 MHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIADLQLHKLDELDCLIQGLLYVDS 376
M FIQMG +KNFSSLHT CATGGGA+KFE+DF I DLQL KLDELDCLI+G+LY+DS
Sbjct: 1 MPAFIQMGRDKNFSSLHTVFCATGGGAYKFEQDFLTIGDLQLCKLDELDCLIKGILYIDS 60
Query: 377 VGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSGVSILAVYSKDNYKRVTGT 436
VGFNG+ +CYYFENP + E CQK P+ L NPYP+LLVN+GSGVSILAVYSKDNYKRVTGT
Sbjct: 61 VGFNGRSQCYYFENPADSEKCQKLPFDLKNPYPLLLVNIGSGVSILAVYSKDNYKRVTGT 120
Query: 437 SLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDYERFGLQGSAVASS 496
SLGGGTF GLCCLLTGC TFEEALEMA++GDST VDKLV+DIYGGDYERFGL G AVASS
Sbjct: 121 SLGGGTFFGLCCLLTGCTTFEEALEMASRGDSTKVDKLVRDIYGGDYERFGLPGWAVASS 180
Query: 497 FGNMMSKEKRDSISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSM 556
FGNMMSKEKR+++SKEDLARATL+TITNNIGSIARMCALNENI++VVFVGNFLRIN ++M
Sbjct: 181 FGNMMSKEKREAVSKEDLARATLITITNNIGSIARMCALNENINQVVFVGNFLRINTIAM 240
Query: 557 KLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLELFKM 594
+LLAYA+D+WSKGQLKALF EHEGYFGAVGALLEL K+
Sbjct: 241 RLLAYALDYWSKGQLKALFSEHEGYFGAVGALLELLKI 278
>gi|24430167 pantothenate kinase 2 isoform 2 [Homo sapiens]
Length = 279
Score = 473 bits (1216), Expect = e-133
Identities = 227/278 (81%), Positives = 254/278 (91%)
Query: 317 MHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIADLQLHKLDELDCLIQGLLYVDS 376
M FIQMG +KNFSSLHT CATGGGA+KFE+DF I DLQL KLDELDCLI+G+LY+DS
Sbjct: 1 MPAFIQMGRDKNFSSLHTVFCATGGGAYKFEQDFLTIGDLQLCKLDELDCLIKGILYIDS 60
Query: 377 VGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSGVSILAVYSKDNYKRVTGT 436
VGFNG+ +CYYFENP + E CQK P+ L NPYP+LLVN+GSGVSILAVYSKDNYKRVTGT
Sbjct: 61 VGFNGRSQCYYFENPADSEKCQKLPFDLKNPYPLLLVNIGSGVSILAVYSKDNYKRVTGT 120
Query: 437 SLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDYERFGLQGSAVASS 496
SLGGGTF GLCCLLTGC TFEEALEMA++GDST VDKLV+DIYGGDYERFGL G AVASS
Sbjct: 121 SLGGGTFFGLCCLLTGCTTFEEALEMASRGDSTKVDKLVRDIYGGDYERFGLPGWAVASS 180
Query: 497 FGNMMSKEKRDSISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSM 556
FGNMMSKEKR+++SKEDLARATL+TITNNIGSIARMCALNENI++VVFVGNFLRIN ++M
Sbjct: 181 FGNMMSKEKREAVSKEDLARATLITITNNIGSIARMCALNENINQVVFVGNFLRINTIAM 240
Query: 557 KLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLELFKM 594
+LLAYA+D+WSKGQLKALF EHEGYFGAVGALLEL K+
Sbjct: 241 RLLAYALDYWSKGQLKALFSEHEGYFGAVGALLELLKI 278
>gi|8922665 pantothenate kinase 4 [Homo sapiens]
Length = 773
Score = 210 bits (534), Expect = 3e-54
Identities = 127/352 (36%), Positives = 206/352 (58%), Gaps = 21/352 (5%)
Query: 239 FGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNL 298
F +DIGG+L KL Y+ Q +V ++S GK R+ +
Sbjct: 37 FAIDIGGSLTKLAYYSTV-------QHKVAKVRSFDHS-------GKDTEREHEPPYEIS 82
Query: 299 TMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIADLQL 358
LHFI+F + + + + ++ + ATGGGA+KF++ L++
Sbjct: 83 VQEEITARLHFIKFENTYIEACLDFIKDHLVNTETKVIQATGGGAYKFKDLIEEKLRLKV 142
Query: 359 HKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSG 418
K D + CLI+G +V N E + ++ ++PE + + + +P LLVN+GSG
Sbjct: 143 DKEDVMTCLIKGCNFVLK---NIPHEAFVYQKDSDPEFRFQTNH--PHIFPYLLVNIGSG 197
Query: 419 VSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDI 478
VSI+ V ++D ++ V G+S+GGGTF GL LLT + F+E L +A++G +NVD LV+D+
Sbjct: 198 VSIVKVETEDRFEWVGGSSIGGGTFWGLGALLTKTKKFDELLHLASRGQHSNVDMLVRDV 257
Query: 479 YGGDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITNNIGSIARMCALNEN 538
YGG ++ GL G+ +ASSFG + ++ SKED+A++ L I+N+IG +A + A +
Sbjct: 258 YGGAHQTLGLSGNLIASSFGKSATADQ--EFSKEDMAKSLLHMISNDIGQLACLHARLHS 315
Query: 539 IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLE 590
+DRV F G F+R + V+M+ + Y+++F+SKG+++ALFL HEGY GA+GA L+
Sbjct: 316 LDRVYFGGFFIRGHPVTMRTITYSINFFSKGEVQALFLRHEGYLGAIGAFLK 367
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 45.4 bits (106), Expect = 1e-04
Identities = 62/226 (27%), Positives = 81/226 (35%), Gaps = 28/226 (12%)
Query: 23 GGEEAAFEVARPG--DQGKAGGGSPGWGCA---GIPDSAPGAGVLQAGAVGPARGG-QGA 76
GG ++ RPG + GG+ G G P+ P G Q+ P G +G
Sbjct: 64 GGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGP 123
Query: 77 EEVGESAGGGEERRVRHPQAPALRLLNRK----PQGGSGEIKTPENDLQRGRLSRGPRTA 132
G + G R P+ P + N+ P+ G E P Q G S+GP
Sbjct: 124 PPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPP----QGGNQSQGPPPH 179
Query: 133 PPAP-GMGDRSGQQERSVPHSPGAPVGTSAAAVNGLLHNGFHPPPVQPPHVCSRGPVGGS 191
P P G + G Q + P PG P G N G P P +P GP
Sbjct: 180 PGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQ--SQGPPPRPGKP-----EGPPSQG 232
Query: 192 DAAPQRLPLLPELQPQPLLPQHDSPAKKCRLRRRMDSGRKNRPPFP 237
PQ P P P PQ P + + +R GR PP P
Sbjct: 233 GNKPQGPP------PHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPP 272
Score = 35.4 bits (80), Expect = 0.15
Identities = 48/183 (26%), Positives = 62/183 (33%), Gaps = 17/183 (9%)
Query: 23 GGEEAAFEVARPG--DQGKAGGGSPGWGCA---GIPDSAPGAGVLQAGAVGPARGG-QGA 76
GG ++ RPG + GG+ G G P+ P G Q+ P G +G
Sbjct: 127 GGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGP 186
Query: 77 EEVGESAGGGEERRVRHPQAPALRLLNRKPQGGS-GEIKTPENDLQRGRLSRG---PRTA 132
G + G R P+ P PQGG+ + P G S+G P+
Sbjct: 187 PPQGGNQSQGPPPRPGKPEGPP-------PQGGNQSQGPPPRPGKPEGPPSQGGNKPQGP 239
Query: 133 PPAPGMGDRSGQQERSVPHSPGAPVGTSAAAVNGLLHNGFHPPPVQPPHVCSRGPVGGSD 192
PP PG QE + P P P G PPP P P GG
Sbjct: 240 PPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQGGRP 299
Query: 193 AAP 195
P
Sbjct: 300 HRP 302
Score = 31.2 bits (69), Expect = 2.8
Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 27/108 (25%)
Query: 104 RKPQGGSGEIKTPENDLQRGRLSRGPRTAPPAPGMGD----RSGQQERSVPHSPGAPVGT 159
R+PQGG+ P+ PP PG + + G Q + P PG P G
Sbjct: 39 RRPQGGNQ-----------------PQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGP 81
Query: 160 SAAAVNGLLHNGFHPPPVQPPHVCSRGPVGGSDA-APQRLPLLPELQP 206
N PP +P + P GG+ + P P PE P
Sbjct: 82 PPQG-----GNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPP 124
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 45.1 bits (105), Expect = 2e-04
Identities = 56/177 (31%), Positives = 70/177 (39%), Gaps = 37/177 (20%)
Query: 34 PGDQGKAG-GGSPG-------WGCAGIPDS--APGAGVLQAGAVGPARGGQGAEEVGESA 83
PG +G G GSPG G AG P + APGA G VGPA E G +
Sbjct: 1018 PGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGA----PGPVGPAGKSGDRGETGPAG 1073
Query: 84 GGGEERRV--RHPQAPALRLLNRKPQGGSGEI-KTPENDLQRGRLSRGPRTAPPAPGMGD 140
G V R P P + P+G GE + + ++ R G + P PG
Sbjct: 1074 PAGPVGPVGARGPAGP------QGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPG 1127
Query: 141 RSGQQERSVPHSPGAPVGTSAA----AVNGLLHNGFHPPPVQPPHVCSR----GPVG 189
G S P P P G++ A +NGL P P+ PP R GPVG
Sbjct: 1128 EQGPSGASGPAGPRGPPGSAGAPGKDGLNGL------PGPIGPPGPRGRTGDAGPVG 1178
Score = 39.7 bits (91), Expect = 0.008
Identities = 44/132 (33%), Positives = 50/132 (37%), Gaps = 15/132 (11%)
Query: 30 EVARPGDQGKAG--GGSPGWGCAGIPDSAPGAGVLQ-AGAVGPARGGQGAEEVGESAGGG 86
E RPG G AG G G AG P AG GAVG A+G G + S G
Sbjct: 309 ERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVG-AKGEAGPQGPRGSEGPQ 367
Query: 87 EERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSRGPRTAPPAPGMGDRSGQQE 146
R P PA G +G P D Q G ++G AP G G +
Sbjct: 368 GVRGEPGPPGPA---------GAAGPAGNPGADGQPG--AKGANGAPGIAGAPGFPGARG 416
Query: 147 RSVPHSPGAPVG 158
S P PG P G
Sbjct: 417 PSGPQGPGGPPG 428
Score = 39.7 bits (91), Expect = 0.008
Identities = 65/230 (28%), Positives = 76/230 (33%), Gaps = 67/230 (29%)
Query: 30 EVARPGDQGKAGG-GSPGW-GCAGIPDSAPGAGVL-QAGAVG-------------PARGG 73
EV PG G AG GSPG G AG P + G+ Q G VG P G
Sbjct: 921 EVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSG 980
Query: 74 QGAEEVGESAGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSR------ 127
+ ++ G S GE R P P P G SG P + GR
Sbjct: 981 EPGKQ-GPSGASGE----RGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGD 1035
Query: 128 -------GPRTAPPAPGM------GDRSGQQERSVPHSPGAPVGTSAA------------ 162
GP AP APG +SG + + P P PVG A
Sbjct: 1036 RGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGD 1095
Query: 163 ----------AVNGLLHNGF---HPPPVQPPHVCSRGPVGGSDAAPQRLP 199
+ G H GF PP P +GP G S A R P
Sbjct: 1096 KGETGEQGDRGIKG--HRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGP 1143
Score = 34.3 bits (77), Expect = 0.34
Identities = 42/146 (28%), Positives = 53/146 (36%), Gaps = 14/146 (9%)
Query: 30 EVARPGDQGKAGG-GSPGWGCAGIPDSAPGAGVLQAGAVGPA--RGGQGAE-EVGESAGG 85
E +PG+QG G G+PG A PG +Q G GPA RG GA G
Sbjct: 654 EAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQ-GPPGPAGPRGANGAPGNDGAKGDA 712
Query: 86 GEERRVRHPQAPALRLLNRK--------PQGGSGEIKTPENDLQRGRLSRGPRTAPPAP- 136
G AP L+ + + P+G G+ D G+ T P P
Sbjct: 713 GAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPP 772
Query: 137 GMGDRSGQQERSVPHSPGAPVGTSAA 162
G G + S P P P G A
Sbjct: 773 GPAGAPGDKGESGPSGPAGPTGARGA 798
Score = 30.4 bits (67), Expect = 4.8
Identities = 41/132 (31%), Positives = 50/132 (37%), Gaps = 22/132 (16%)
Query: 35 GDQGKAGG-GSPGWGCAGIPDSA--PGAGVLQAGAVGPARGGQGAEEVGESAGGGEERRV 91
G G AG GSPG AG P A PGA L P G+ G G++ R
Sbjct: 512 GSPGPAGPKGSPGE--AGRPGEAGLPGAKGLTGSPGSPGPDGK----TGPPGPAGQDGRP 565
Query: 92 RHPQAPALR-----LLNRKPQGGSGEIKTPENDLQRGRLSRGPRTAPPAPGMGDRSGQQE 146
P P R + P+G +GE P +RG GP P A G + G+
Sbjct: 566 GPPGPPGARGQAGVMGFPGPKGAAGE---PGKAGERG--VPGP---PGAVGPAGKDGEAG 617
Query: 147 RSVPHSPGAPVG 158
P P P G
Sbjct: 618 AQGPPGPAGPAG 629
>gi|21704281 junctophilin 2 isoform 1 [Homo sapiens]
Length = 696
Score = 45.1 bits (105), Expect = 2e-04
Identities = 55/200 (27%), Positives = 76/200 (38%), Gaps = 36/200 (18%)
Query: 42 GGSPGWGCAGIPDSA----PGA---GVLQAGAVGPARGGQGAEEVGESAGGGEERRVRHP 94
GGSP AG P PG G+L GA G+G+ V S G G R P
Sbjct: 482 GGSPS--PAGTPPQPKRPRPGVSKDGLLSPGAWNGEPSGEGSRSVTPSEGAGR----RSP 535
Query: 95 QAPAL-RLLNRKPQGGSGEIKTPENDLQRGRLSRGPRTAPPAPGMGDRSGQQERSVPHSP 153
PA R+ Q + PE L +G S RT PP P + Q E V S
Sbjct: 536 ARPATERMAIEALQAPPAPSREPEVALYQGYHSYAVRTTPPEPPPFE--DQPEPEVSGSE 593
Query: 154 GAPVGTSAAAVNGLLHNGFHPPPVQPPHVCSRGPVGGSDAAPQRLPLLPELQPQPLLPQH 213
AP + A P+Q P + P + A + P++P+ +P+
Sbjct: 594 SAPSSPATA-------------PLQAPTLRGPEPARETPAKLEPKPIIPKAEPR------ 634
Query: 214 DSPAKKCRLRRRMDSGRKNR 233
+ A+K R +G K +
Sbjct: 635 -AKARKTEARGLTKAGAKKK 653
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 45.1 bits (105), Expect = 2e-04
Identities = 48/158 (30%), Positives = 67/158 (42%), Gaps = 28/158 (17%)
Query: 21 SLGGEEAAFEVARPGDQGKAGGGSPG---WGCAGIPDSAPGAGVLQAGAVGPARGGQGAE 77
SL + A EVA G++ G SPG W A + PG + A G AR G +
Sbjct: 303 SLSPQAEAIEVAA----GESAGRSPGELAWDAAEEAE-VPGVKGSEEAAPGDARADAGED 357
Query: 78 EVGESA----GGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSRGPRTAP 133
VG+ G EERR R P+ P R+ + GE ++P++ G SRG A
Sbjct: 358 RVGDGPQQEPGEDEERRERSPEGP------REEEAAGGEEESPDSS-PHGEASRG--AAE 408
Query: 134 PAPGMGDRSGQQERSVPHSPGAPVGTSAAAVNGLLHNG 171
P + + ++ P G AA VNG +G
Sbjct: 409 PEAQLSNHLAEE------GPAEGSG-EAARVNGRREDG 439
Score = 36.6 bits (83), Expect = 0.068
Identities = 38/142 (26%), Positives = 54/142 (38%), Gaps = 19/142 (13%)
Query: 25 EEAAFEVARPGDQGKAGGGSPGWGCAGIPDSAPGAGVLQAGAVGPARGGQGAEEVGESAG 84
E A E PG QG +P G P +A G G+ G +GA V E+ G
Sbjct: 3 EAAEPEGVAPGPQGPPEVPAPLAERPGEPGAAGGEAEGPEGSEGAEEAPRGAAAVKEAGG 62
Query: 85 GGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSRGPR----------TAPP 134
GG + R P+A A R +G GE + E + + +G +P
Sbjct: 63 GGPD---RGPEAEA-----RGTRGAHGETEAEEGAPEGAEVPQGGEETSGAQQVEGASPG 114
Query: 135 APGMGDRSGQQERSVPHSPGAP 156
G+ G+ +R P AP
Sbjct: 115 RGAQGEPRGEAQRE-PEDSAAP 135
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 45.1 bits (105), Expect = 2e-04
Identities = 66/234 (28%), Positives = 88/234 (37%), Gaps = 27/234 (11%)
Query: 23 GGEEAAFEVARPG-DQGKAGGGSPGWGCAGIPDSAPGAGVLQAGAVGPARGGQGAEEVGE 81
G +EAA +A + + G GSPG G G PG G A A+G G G E G
Sbjct: 7 GADEAALLLAGLALRELEPGCGSPGRGRRG---PRPGPGDEAAPALGRRGKGSGGPEAGA 63
Query: 82 ---SAGGGEERRVRHPQ-------APALRLLNRKPQGGSGEIKTPENDLQRGRLSRGPRT 131
S G RR P+ +P L GG G ++ L + PR+
Sbjct: 64 DGLSRGERGPRRAAVPELSAQPAGSPRASLAGSDGGGGGGSARSSGISLGYDQRHGSPRS 123
Query: 132 --APPAPGMGDRSGQQERSVPHSPGAPVGTSAAAVNGLLHNGFHPPPVQPPHVCSRGPVG 189
+ P PG G S RS S G+ SA A L G P P + P P G
Sbjct: 124 GRSDPRPGPGPPSVGSARSSVSSLGS--RGSAGAYADFLPPGACPAPARSPE-----PAG 176
Query: 190 GSDAAPQRLPLLPELQPQPLLPQHDSPAKKCRLRRRMDSGRKNRPPFPWFGMDI 243
+ LPL P + P + A L R ++ + R +FG+ I
Sbjct: 177 PAPFPLPALPLPPGREGGPSAAERRLEA----LTRELERALEARTARDYFGICI 226
>gi|61699226 pulmonary surfactant-associated protein D precursor
[Homo sapiens]
Length = 375
Score = 44.7 bits (104), Expect = 2e-04
Identities = 51/168 (30%), Positives = 68/168 (40%), Gaps = 21/168 (12%)
Query: 27 AAFEVARPGDQGKAGGGSPGW--GCAGIPDSAPGAGVL-QAGAVGPARGGQGAEEVGESA 83
++ E PG G+ G P G G+P +A AG+ QAG VGP +G G+ VGE
Sbjct: 41 SSVESGLPGRDGRDGREGPRGEKGDPGLPGAAGQAGMPGQAGPVGP-KGDNGS--VGEPG 97
Query: 84 GGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLS----RGPRTAPPAPGMG 139
G+ P P + P G G + N +G+ GP+ APGM
Sbjct: 98 PKGDTGPSGPPGPPGVP----GPAGREGPLGKQGNIGPQGKPGPKGEAGPKGEVGAPGMQ 153
Query: 140 DRSGQQ-------ERSVPHSPGAPVGTSAAAVNGLLHNGFHPPPVQPP 180
+G + ER VP G P T AA G + P PP
Sbjct: 154 GSAGARGLAGPKGERGVPGERGVPGNTGAAGSAGAMGPQGSPGARGPP 201
>gi|76781485 vascular endothelial growth factor A isoform f
precursor [Homo sapiens]
Length = 327
Score = 44.3 bits (103), Expect = 3e-04
Identities = 39/140 (27%), Positives = 49/140 (35%), Gaps = 12/140 (8%)
Query: 35 GDQGKAGGGSPGWGCAGIP---------DSAPGAGVLQAGAVGP---ARGGQGAEEVGES 82
G + GGG G G G+ S G V++AG P AR E +
Sbjct: 33 GPEPAPGGGVEGVGARGVALKLFVQLLGCSRFGGAVVRAGEAEPSGAARSASSGREEPQP 92
Query: 83 AGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSRGPRTAPPAPGMGDRS 142
G EE + P RL RKP +GE + R + A G R
Sbjct: 93 EEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAPQALARASGRGGRVARR 152
Query: 143 GQQERSVPHSPGAPVGTSAA 162
G +E PHSP S A
Sbjct: 153 GAEESGPPHSPSRRGSASRA 172
>gi|76781484 vascular endothelial growth factor A isoform e
precursor [Homo sapiens]
Length = 354
Score = 44.3 bits (103), Expect = 3e-04
Identities = 39/140 (27%), Positives = 49/140 (35%), Gaps = 12/140 (8%)
Query: 35 GDQGKAGGGSPGWGCAGIP---------DSAPGAGVLQAGAVGP---ARGGQGAEEVGES 82
G + GGG G G G+ S G V++AG P AR E +
Sbjct: 33 GPEPAPGGGVEGVGARGVALKLFVQLLGCSRFGGAVVRAGEAEPSGAARSASSGREEPQP 92
Query: 83 AGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSRGPRTAPPAPGMGDRS 142
G EE + P RL RKP +GE + R + A G R
Sbjct: 93 EEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAPQALARASGRGGRVARR 152
Query: 143 GQQERSVPHSPGAPVGTSAA 162
G +E PHSP S A
Sbjct: 153 GAEESGPPHSPSRRGSASRA 172
>gi|76781483 vascular endothelial growth factor A isoform d
precursor [Homo sapiens]
Length = 371
Score = 44.3 bits (103), Expect = 3e-04
Identities = 39/140 (27%), Positives = 49/140 (35%), Gaps = 12/140 (8%)
Query: 35 GDQGKAGGGSPGWGCAGIP---------DSAPGAGVLQAGAVGP---ARGGQGAEEVGES 82
G + GGG G G G+ S G V++AG P AR E +
Sbjct: 33 GPEPAPGGGVEGVGARGVALKLFVQLLGCSRFGGAVVRAGEAEPSGAARSASSGREEPQP 92
Query: 83 AGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSRGPRTAPPAPGMGDRS 142
G EE + P RL RKP +GE + R + A G R
Sbjct: 93 EEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAPQALARASGRGGRVARR 152
Query: 143 GQQERSVPHSPGAPVGTSAA 162
G +E PHSP S A
Sbjct: 153 GAEESGPPHSPSRRGSASRA 172
>gi|76781482 vascular endothelial growth factor A isoform c
precursor [Homo sapiens]
Length = 389
Score = 44.3 bits (103), Expect = 3e-04
Identities = 39/140 (27%), Positives = 49/140 (35%), Gaps = 12/140 (8%)
Query: 35 GDQGKAGGGSPGWGCAGIP---------DSAPGAGVLQAGAVGP---ARGGQGAEEVGES 82
G + GGG G G G+ S G V++AG P AR E +
Sbjct: 33 GPEPAPGGGVEGVGARGVALKLFVQLLGCSRFGGAVVRAGEAEPSGAARSASSGREEPQP 92
Query: 83 AGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSRGPRTAPPAPGMGDRS 142
G EE + P RL RKP +GE + R + A G R
Sbjct: 93 EEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAPQALARASGRGGRVARR 152
Query: 143 GQQERSVPHSPGAPVGTSAA 162
G +E PHSP S A
Sbjct: 153 GAEESGPPHSPSRRGSASRA 172
>gi|76781481 vascular endothelial growth factor A isoform b
precursor [Homo sapiens]
Length = 395
Score = 44.3 bits (103), Expect = 3e-04
Identities = 39/140 (27%), Positives = 49/140 (35%), Gaps = 12/140 (8%)
Query: 35 GDQGKAGGGSPGWGCAGIP---------DSAPGAGVLQAGAVGP---ARGGQGAEEVGES 82
G + GGG G G G+ S G V++AG P AR E +
Sbjct: 33 GPEPAPGGGVEGVGARGVALKLFVQLLGCSRFGGAVVRAGEAEPSGAARSASSGREEPQP 92
Query: 83 AGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSRGPRTAPPAPGMGDRS 142
G EE + P RL RKP +GE + R + A G R
Sbjct: 93 EEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAPQALARASGRGGRVARR 152
Query: 143 GQQERSVPHSPGAPVGTSAA 162
G +E PHSP S A
Sbjct: 153 GAEESGPPHSPSRRGSASRA 172
>gi|76781480 vascular endothelial growth factor A isoform a
precursor [Homo sapiens]
Length = 412
Score = 44.3 bits (103), Expect = 3e-04
Identities = 39/140 (27%), Positives = 49/140 (35%), Gaps = 12/140 (8%)
Query: 35 GDQGKAGGGSPGWGCAGIP---------DSAPGAGVLQAGAVGP---ARGGQGAEEVGES 82
G + GGG G G G+ S G V++AG P AR E +
Sbjct: 33 GPEPAPGGGVEGVGARGVALKLFVQLLGCSRFGGAVVRAGEAEPSGAARSASSGREEPQP 92
Query: 83 AGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSRGPRTAPPAPGMGDRS 142
G EE + P RL RKP +GE + R + A G R
Sbjct: 93 EEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAPQALARASGRGGRVARR 152
Query: 143 GQQERSVPHSPGAPVGTSAA 162
G +E PHSP S A
Sbjct: 153 GAEESGPPHSPSRRGSASRA 172
>gi|76781487 vascular endothelial growth factor A isoform g
precursor [Homo sapiens]
Length = 371
Score = 44.3 bits (103), Expect = 3e-04
Identities = 39/140 (27%), Positives = 49/140 (35%), Gaps = 12/140 (8%)
Query: 35 GDQGKAGGGSPGWGCAGIP---------DSAPGAGVLQAGAVGP---ARGGQGAEEVGES 82
G + GGG G G G+ S G V++AG P AR E +
Sbjct: 33 GPEPAPGGGVEGVGARGVALKLFVQLLGCSRFGGAVVRAGEAEPSGAARSASSGREEPQP 92
Query: 83 AGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSRGPRTAPPAPGMGDRS 142
G EE + P RL RKP +GE + R + A G R
Sbjct: 93 EEGEEEEEKEEERGPQWRLGARKPGSWTGEAAVCADSAPAARAPQALARASGRGGRVARR 152
Query: 143 GQQERSVPHSPGAPVGTSAA 162
G +E PHSP S A
Sbjct: 153 GAEESGPPHSPSRRGSASRA 172
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 43.9 bits (102), Expect = 4e-04
Identities = 63/221 (28%), Positives = 83/221 (37%), Gaps = 31/221 (14%)
Query: 7 GGGGQDWACSVAGTSLGGEEAAFEVARPGDQGKAG-GGSPGW-GCAGIPDSAPGAGVL-- 62
G G + G S G E+ A PG QGK G G PG+ G G+ + G++
Sbjct: 268 GEPGPPGPSGLPGESYGSEKGA--PGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGE 325
Query: 63 -----QAGAVGPARGGQGAEEVGESAGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPE 117
Q G +GP G +G E ++ + P P R PQG SG P
Sbjct: 326 DGIKGQKGDIGPP-GFRGPTEYYDTYQEKGDEGTPGPPGPRGA---RGPQGPSGPPGVPG 381
Query: 118 NDLQRGRLSRGPRTAPPAPGMGDRSGQQERSVPHSPGAPVGTSAAAVNGLLHNGFHPPPV 177
+ G G R AP PG+ G++ R + G P A GL + P P
Sbjct: 382 SP---GSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGS---PGPP 435
Query: 178 QPPH--VCSRGPVGGSDAAPQRLPLLPELQPQPLLPQHDSP 216
PP V +GP G LP P +P D P
Sbjct: 436 GPPGDIVFRKGPPGDHG--------LPGYLGSPGIPGVDGP 468
Score = 43.9 bits (102), Expect = 4e-04
Identities = 53/170 (31%), Positives = 62/170 (36%), Gaps = 22/170 (12%)
Query: 35 GDQG----KAGGGSPG-WGCAGIPDSA--PGAGVLQAGAVGPARGGQGAEEVGESAGGGE 87
GDQG K G PG G G+P PGA A A+ G G GE GE
Sbjct: 709 GDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFP--GERGNSGE 766
Query: 88 ERRVRHPQAPALRLLNRK-----PQGGSGEIKTPENDLQRGRLSRGPRTAPPAPGMGDRS 142
+ P P L P+G G+ P GR GPR A PG+
Sbjct: 767 HGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLK 826
Query: 143 GQQERSVPHSPGAPVGTSAAAVNGLLHNGF---HPPPVQPPHVCSRGPVG 189
GQQ R P G + GL +GF P P H GP+G
Sbjct: 827 GQQGRRGKTGPKGDPG-----IPGLDRSGFPGETGSPGIPGHQGEMGPLG 871
Score = 35.0 bits (79), Expect = 0.20
Identities = 60/202 (29%), Positives = 72/202 (35%), Gaps = 42/202 (20%)
Query: 23 GGEEAAFEVARPGDQGKAGG-GSPGW-------GCAGI--PDSAPGAGVLQAGAVGPA-- 70
G E A PG GK G G G+ G GI P PG G+ GP
Sbjct: 1098 GPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGF----PGSPGPMGI 1153
Query: 71 RGGQGAEEVGESAGG-GEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSR-- 127
RG QG + + AG GE +R P P N QG G+ P GR
Sbjct: 1154 RGDQGRDGIPGPAGEKGETGLLRAPPGPRG---NPGAQGAKGDRGAPGFPGLPGRKGAMG 1210
Query: 128 --GPRTA------PPAPGM---------GDRSGQQERSVPHSPG--APVGTSAAAVNGLL 168
GPR P PG+ G+R R P +PG P G+ + G
Sbjct: 1211 DAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDK 1270
Query: 169 HNGFHPPPVQPPHVC-SRGPVG 189
+ HP P PP GP G
Sbjct: 1271 GSMGHPGPKGPPGTAGDMGPPG 1292
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 43.9 bits (102), Expect = 4e-04
Identities = 63/221 (28%), Positives = 83/221 (37%), Gaps = 31/221 (14%)
Query: 7 GGGGQDWACSVAGTSLGGEEAAFEVARPGDQGKAG-GGSPGW-GCAGIPDSAPGAGVL-- 62
G G + G S G E+ A PG QGK G G PG+ G G+ + G++
Sbjct: 268 GEPGPPGPSGLPGESYGSEKGA--PGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGE 325
Query: 63 -----QAGAVGPARGGQGAEEVGESAGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPE 117
Q G +GP G +G E ++ + P P R PQG SG P
Sbjct: 326 DGIKGQKGDIGPP-GFRGPTEYYDTYQEKGDEGTPGPPGPRGA---RGPQGPSGPPGVPG 381
Query: 118 NDLQRGRLSRGPRTAPPAPGMGDRSGQQERSVPHSPGAPVGTSAAAVNGLLHNGFHPPPV 177
+ G G R AP PG+ G++ R + G P A GL + P P
Sbjct: 382 SP---GSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGS---PGPP 435
Query: 178 QPPH--VCSRGPVGGSDAAPQRLPLLPELQPQPLLPQHDSP 216
PP V +GP G LP P +P D P
Sbjct: 436 GPPGDIVFRKGPPGDHG--------LPGYLGSPGIPGVDGP 468
Score = 43.9 bits (102), Expect = 4e-04
Identities = 53/170 (31%), Positives = 62/170 (36%), Gaps = 22/170 (12%)
Query: 35 GDQG----KAGGGSPG-WGCAGIPDSA--PGAGVLQAGAVGPARGGQGAEEVGESAGGGE 87
GDQG K G PG G G+P PGA A A+ G G GE GE
Sbjct: 709 GDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFP--GERGNSGE 766
Query: 88 ERRVRHPQAPALRLLNRK-----PQGGSGEIKTPENDLQRGRLSRGPRTAPPAPGMGDRS 142
+ P P L P+G G+ P GR GPR A PG+
Sbjct: 767 HGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLK 826
Query: 143 GQQERSVPHSPGAPVGTSAAAVNGLLHNGF---HPPPVQPPHVCSRGPVG 189
GQQ R P G + GL +GF P P H GP+G
Sbjct: 827 GQQGRRGKTGPKGDPG-----IPGLDRSGFPGETGSPGIPGHQGEMGPLG 871
Score = 35.0 bits (79), Expect = 0.20
Identities = 60/202 (29%), Positives = 72/202 (35%), Gaps = 42/202 (20%)
Query: 23 GGEEAAFEVARPGDQGKAGG-GSPGW-------GCAGI--PDSAPGAGVLQAGAVGPA-- 70
G E A PG GK G G G+ G GI P PG G+ GP
Sbjct: 1098 GPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGF----PGSPGPMGI 1153
Query: 71 RGGQGAEEVGESAGG-GEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSR-- 127
RG QG + + AG GE +R P P N QG G+ P GR
Sbjct: 1154 RGDQGRDGIPGPAGEKGETGLLRAPPGPRG---NPGAQGAKGDRGAPGFPGLPGRKGAMG 1210
Query: 128 --GPRTA------PPAPGM---------GDRSGQQERSVPHSPG--APVGTSAAAVNGLL 168
GPR P PG+ G+R R P +PG P G+ + G
Sbjct: 1211 DAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDK 1270
Query: 169 HNGFHPPPVQPPHVC-SRGPVG 189
+ HP P PP GP G
Sbjct: 1271 GSMGHPGPKGPPGTAGDMGPPG 1292
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 43.9 bits (102), Expect = 4e-04
Identities = 63/221 (28%), Positives = 83/221 (37%), Gaps = 31/221 (14%)
Query: 7 GGGGQDWACSVAGTSLGGEEAAFEVARPGDQGKAG-GGSPGW-GCAGIPDSAPGAGVL-- 62
G G + G S G E+ A PG QGK G G PG+ G G+ + G++
Sbjct: 268 GEPGPPGPSGLPGESYGSEKGA--PGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGE 325
Query: 63 -----QAGAVGPARGGQGAEEVGESAGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPE 117
Q G +GP G +G E ++ + P P R PQG SG P
Sbjct: 326 DGIKGQKGDIGPP-GFRGPTEYYDTYQEKGDEGTPGPPGPRGA---RGPQGPSGPPGVPG 381
Query: 118 NDLQRGRLSRGPRTAPPAPGMGDRSGQQERSVPHSPGAPVGTSAAAVNGLLHNGFHPPPV 177
+ G G R AP PG+ G++ R + G P A GL + P P
Sbjct: 382 SP---GSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGS---PGPP 435
Query: 178 QPPH--VCSRGPVGGSDAAPQRLPLLPELQPQPLLPQHDSP 216
PP V +GP G LP P +P D P
Sbjct: 436 GPPGDIVFRKGPPGDHG--------LPGYLGSPGIPGVDGP 468
Score = 43.9 bits (102), Expect = 4e-04
Identities = 53/170 (31%), Positives = 62/170 (36%), Gaps = 22/170 (12%)
Query: 35 GDQG----KAGGGSPG-WGCAGIPDSA--PGAGVLQAGAVGPARGGQGAEEVGESAGGGE 87
GDQG K G PG G G+P PGA A A+ G G GE GE
Sbjct: 709 GDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFP--GERGNSGE 766
Query: 88 ERRVRHPQAPALRLLNRK-----PQGGSGEIKTPENDLQRGRLSRGPRTAPPAPGMGDRS 142
+ P P L P+G G+ P GR GPR A PG+
Sbjct: 767 HGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLK 826
Query: 143 GQQERSVPHSPGAPVGTSAAAVNGLLHNGF---HPPPVQPPHVCSRGPVG 189
GQQ R P G + GL +GF P P H GP+G
Sbjct: 827 GQQGRRGKTGPKGDPG-----IPGLDRSGFPGETGSPGIPGHQGEMGPLG 871
Score = 35.0 bits (79), Expect = 0.20
Identities = 60/202 (29%), Positives = 72/202 (35%), Gaps = 42/202 (20%)
Query: 23 GGEEAAFEVARPGDQGKAGG-GSPGW-------GCAGI--PDSAPGAGVLQAGAVGPA-- 70
G E A PG GK G G G+ G GI P PG G+ GP
Sbjct: 1098 GPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGF----PGSPGPMGI 1153
Query: 71 RGGQGAEEVGESAGG-GEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSR-- 127
RG QG + + AG GE +R P P N QG G+ P GR
Sbjct: 1154 RGDQGRDGIPGPAGEKGETGLLRAPPGPRG---NPGAQGAKGDRGAPGFPGLPGRKGAMG 1210
Query: 128 --GPRTA------PPAPGM---------GDRSGQQERSVPHSPG--APVGTSAAAVNGLL 168
GPR P PG+ G+R R P +PG P G+ + G
Sbjct: 1211 DAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDK 1270
Query: 169 HNGFHPPPVQPPHVC-SRGPVG 189
+ HP P PP GP G
Sbjct: 1271 GSMGHPGPKGPPGTAGDMGPPG 1292
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 43.9 bits (102), Expect = 4e-04
Identities = 63/221 (28%), Positives = 83/221 (37%), Gaps = 31/221 (14%)
Query: 7 GGGGQDWACSVAGTSLGGEEAAFEVARPGDQGKAG-GGSPGW-GCAGIPDSAPGAGVL-- 62
G G + G S G E+ A PG QGK G G PG+ G G+ + G++
Sbjct: 268 GEPGPPGPSGLPGESYGSEKGA--PGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGE 325
Query: 63 -----QAGAVGPARGGQGAEEVGESAGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPE 117
Q G +GP G +G E ++ + P P R PQG SG P
Sbjct: 326 DGIKGQKGDIGPP-GFRGPTEYYDTYQEKGDEGTPGPPGPRGA---RGPQGPSGPPGVPG 381
Query: 118 NDLQRGRLSRGPRTAPPAPGMGDRSGQQERSVPHSPGAPVGTSAAAVNGLLHNGFHPPPV 177
+ G G R AP PG+ G++ R + G P A GL + P P
Sbjct: 382 SP---GSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGS---PGPP 435
Query: 178 QPPH--VCSRGPVGGSDAAPQRLPLLPELQPQPLLPQHDSP 216
PP V +GP G LP P +P D P
Sbjct: 436 GPPGDIVFRKGPPGDHG--------LPGYLGSPGIPGVDGP 468
Score = 43.9 bits (102), Expect = 4e-04
Identities = 53/170 (31%), Positives = 62/170 (36%), Gaps = 22/170 (12%)
Query: 35 GDQG----KAGGGSPG-WGCAGIPDSA--PGAGVLQAGAVGPARGGQGAEEVGESAGGGE 87
GDQG K G PG G G+P PGA A A+ G G GE GE
Sbjct: 709 GDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFP--GERGNSGE 766
Query: 88 ERRVRHPQAPALRLLNRK-----PQGGSGEIKTPENDLQRGRLSRGPRTAPPAPGMGDRS 142
+ P P L P+G G+ P GR GPR A PG+
Sbjct: 767 HGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLK 826
Query: 143 GQQERSVPHSPGAPVGTSAAAVNGLLHNGF---HPPPVQPPHVCSRGPVG 189
GQQ R P G + GL +GF P P H GP+G
Sbjct: 827 GQQGRRGKTGPKGDPG-----IPGLDRSGFPGETGSPGIPGHQGEMGPLG 871
Score = 35.0 bits (79), Expect = 0.20
Identities = 60/202 (29%), Positives = 72/202 (35%), Gaps = 42/202 (20%)
Query: 23 GGEEAAFEVARPGDQGKAGG-GSPGW-------GCAGI--PDSAPGAGVLQAGAVGPA-- 70
G E A PG GK G G G+ G GI P PG G+ GP
Sbjct: 1098 GPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGF----PGSPGPMGI 1153
Query: 71 RGGQGAEEVGESAGG-GEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSR-- 127
RG QG + + AG GE +R P P N QG G+ P GR
Sbjct: 1154 RGDQGRDGIPGPAGEKGETGLLRAPPGPRG---NPGAQGAKGDRGAPGFPGLPGRKGAMG 1210
Query: 128 --GPRTA------PPAPGM---------GDRSGQQERSVPHSPG--APVGTSAAAVNGLL 168
GPR P PG+ G+R R P +PG P G+ + G
Sbjct: 1211 DAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDK 1270
Query: 169 HNGFHPPPVQPPHVC-SRGPVG 189
+ HP P PP GP G
Sbjct: 1271 GSMGHPGPKGPPGTAGDMGPPG 1292
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 43.1 bits (100), Expect = 7e-04
Identities = 68/252 (26%), Positives = 84/252 (33%), Gaps = 63/252 (25%)
Query: 6 GGGGGQDWACSVAGTSLGGEEAAFEVARPGDQGKAGGGSPGWGCAGIPDSAPGAGVL--- 62
GGGGG G GG A A A GG G G G S+ G GVL
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGG---SSAGYGVLSSP 313
Query: 63 --QAGAVGPARGGQGAEEVGE----SAGGGEER---RVRHPQ--APALRLLNRKPQ---- 107
Q G + GG GA + + SA GG +R + +HP P L L P
Sbjct: 314 RQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMR 373
Query: 108 --GGSGEIKTPENDLQRGRLSRGPRTAPPAPGM--------GDRSGQQERSVPHSPGAPV 157
GGS PE P PP P G +G Q+ + G +
Sbjct: 374 SYGGS----YPEYS--------SPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDM 421
Query: 158 GTSAAAVN---GLLHNGFHPPPVQPPHVCSRGPVGGSDAAPQRLPLLPELQPQPLL---- 210
G AA + HP S G G + Q P+ P + +P L
Sbjct: 422 GAQYAAASPAWAAAQQRSHP-------AMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMG 474
Query: 211 ------PQHDSP 216
PQ SP
Sbjct: 475 SNPHSQPQQSSP 486
Score = 35.0 bits (79), Expect = 0.20
Identities = 21/55 (38%), Positives = 23/55 (41%)
Query: 32 ARPGDQGKAGGGSPGWGCAGIPDSAPGAGVLQAGAVGPARGGQGAEEVGESAGGG 86
+RPG G GGG G G +G GAG AGA A A GGG
Sbjct: 244 SRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGG 298
Score = 32.7 bits (73), Expect = 0.98
Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 25/142 (17%)
Query: 94 PQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSR----GPRTAPPAPGMG--------DR 141
PQ L + +G + ND+ +R GP APP PGM D+
Sbjct: 1387 PQMMGGPLQSSSSEGPQQNMWAARNDMPYPYQNRQGPGGPTQAPPYPGMNRTDDMMVPDQ 1446
Query: 142 SGQQERSVPH--SPGAPVGTSAAAVNGLL---HNGFHPPPVQPPHVCSRGPVGGS----- 191
E P S P +S+A++ + + PP P H+ SR P S
Sbjct: 1447 RINHESQWPSHVSQRQPYMSSSASMQPITRPPQPSYQTPPSLPNHI-SRAPSPASFQRSL 1505
Query: 192 --DAAPQRLPLLPELQPQPLLP 211
+P + P LP ++ Q ++P
Sbjct: 1506 ENRMSPSKSPFLPSMKMQKVMP 1527
Score = 32.0 bits (71), Expect = 1.7
Identities = 19/51 (37%), Positives = 21/51 (41%)
Query: 35 GDQGKAGGGSPGWGCAGIPDSAPGAGVLQAGAVGPARGGQGAEEVGESAGG 85
G G GG G G AG + GA A A A GG G G S+ G
Sbjct: 256 GGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
Score = 31.6 bits (70), Expect = 2.2
Identities = 23/57 (40%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 35 GDQGKAGGGSPGWGCAGIPDSAPGAG-----VLQAGAVGPARGGQGAEEVGESAGGG 86
G G GGG G G G A GAG A A A GG G G SAG G
Sbjct: 252 GGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 43.1 bits (100), Expect = 7e-04
Identities = 68/252 (26%), Positives = 84/252 (33%), Gaps = 63/252 (25%)
Query: 6 GGGGGQDWACSVAGTSLGGEEAAFEVARPGDQGKAGGGSPGWGCAGIPDSAPGAGVL--- 62
GGGGG G GG A A A GG G G G S+ G GVL
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGG---SSAGYGVLSSP 313
Query: 63 --QAGAVGPARGGQGAEEVGE----SAGGGEER---RVRHPQ--APALRLLNRKPQ---- 107
Q G + GG GA + + SA GG +R + +HP P L L P
Sbjct: 314 RQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMR 373
Query: 108 --GGSGEIKTPENDLQRGRLSRGPRTAPPAPGM--------GDRSGQQERSVPHSPGAPV 157
GGS PE P PP P G +G Q+ + G +
Sbjct: 374 SYGGS----YPEYS--------SPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDM 421
Query: 158 GTSAAAVN---GLLHNGFHPPPVQPPHVCSRGPVGGSDAAPQRLPLLPELQPQPLL---- 210
G AA + HP S G G + Q P+ P + +P L
Sbjct: 422 GAQYAAASPAWAAAQQRSHP-------AMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMG 474
Query: 211 ------PQHDSP 216
PQ SP
Sbjct: 475 SNPHSQPQQSSP 486
Score = 35.0 bits (79), Expect = 0.20
Identities = 21/55 (38%), Positives = 23/55 (41%)
Query: 32 ARPGDQGKAGGGSPGWGCAGIPDSAPGAGVLQAGAVGPARGGQGAEEVGESAGGG 86
+RPG G GGG G G +G GAG AGA A A GGG
Sbjct: 244 SRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGG 298
Score = 32.7 bits (73), Expect = 0.98
Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 25/142 (17%)
Query: 94 PQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSR----GPRTAPPAPGMG--------DR 141
PQ L + +G + ND+ +R GP APP PGM D+
Sbjct: 1427 PQMMGGPLQSSSSEGPQQNMWAARNDMPYPYQNRQGPGGPTQAPPYPGMNRTDDMMVPDQ 1486
Query: 142 SGQQERSVPH--SPGAPVGTSAAAVNGLL---HNGFHPPPVQPPHVCSRGPVGGS----- 191
E P S P +S+A++ + + PP P H+ SR P S
Sbjct: 1487 RINHESQWPSHVSQRQPYMSSSASMQPITRPPQPSYQTPPSLPNHI-SRAPSPASFQRSL 1545
Query: 192 --DAAPQRLPLLPELQPQPLLP 211
+P + P LP ++ Q ++P
Sbjct: 1546 ENRMSPSKSPFLPSMKMQKVMP 1567
Score = 32.0 bits (71), Expect = 1.7
Identities = 19/51 (37%), Positives = 21/51 (41%)
Query: 35 GDQGKAGGGSPGWGCAGIPDSAPGAGVLQAGAVGPARGGQGAEEVGESAGG 85
G G GG G G AG + GA A A A GG G G S+ G
Sbjct: 256 GGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
Score = 31.6 bits (70), Expect = 2.2
Identities = 23/57 (40%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 35 GDQGKAGGGSPGWGCAGIPDSAPGAG-----VLQAGAVGPARGGQGAEEVGESAGGG 86
G G GGG G G G A GAG A A A GG G G SAG G
Sbjct: 252 GGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 43.1 bits (100), Expect = 7e-04
Identities = 68/252 (26%), Positives = 84/252 (33%), Gaps = 63/252 (25%)
Query: 6 GGGGGQDWACSVAGTSLGGEEAAFEVARPGDQGKAGGGSPGWGCAGIPDSAPGAGVL--- 62
GGGGG G GG A A A GG G G G S+ G GVL
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGG---SSAGYGVLSSP 313
Query: 63 --QAGAVGPARGGQGAEEVGE----SAGGGEER---RVRHPQ--APALRLLNRKPQ---- 107
Q G + GG GA + + SA GG +R + +HP P L L P
Sbjct: 314 RQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMR 373
Query: 108 --GGSGEIKTPENDLQRGRLSRGPRTAPPAPGM--------GDRSGQQERSVPHSPGAPV 157
GGS PE P PP P G +G Q+ + G +
Sbjct: 374 SYGGS----YPEYS--------SPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDM 421
Query: 158 GTSAAAVN---GLLHNGFHPPPVQPPHVCSRGPVGGSDAAPQRLPLLPELQPQPLL---- 210
G AA + HP S G G + Q P+ P + +P L
Sbjct: 422 GAQYAAASPAWAAAQQRSHP-------AMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMG 474
Query: 211 ------PQHDSP 216
PQ SP
Sbjct: 475 SNPHSQPQQSSP 486
Score = 35.0 bits (79), Expect = 0.20
Identities = 21/55 (38%), Positives = 23/55 (41%)
Query: 32 ARPGDQGKAGGGSPGWGCAGIPDSAPGAGVLQAGAVGPARGGQGAEEVGESAGGG 86
+RPG G GGG G G +G GAG AGA A A GGG
Sbjct: 244 SRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGG 298
Score = 32.7 bits (73), Expect = 0.98
Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 25/142 (17%)
Query: 94 PQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSR----GPRTAPPAPGMG--------DR 141
PQ L + +G + ND+ +R GP APP PGM D+
Sbjct: 1374 PQMMGGPLQSSSSEGPQQNMWAARNDMPYPYQNRQGPGGPTQAPPYPGMNRTDDMMVPDQ 1433
Query: 142 SGQQERSVPH--SPGAPVGTSAAAVNGLL---HNGFHPPPVQPPHVCSRGPVGGS----- 191
E P S P +S+A++ + + PP P H+ SR P S
Sbjct: 1434 RINHESQWPSHVSQRQPYMSSSASMQPITRPPQPSYQTPPSLPNHI-SRAPSPASFQRSL 1492
Query: 192 --DAAPQRLPLLPELQPQPLLP 211
+P + P LP ++ Q ++P
Sbjct: 1493 ENRMSPSKSPFLPSMKMQKVMP 1514
Score = 32.0 bits (71), Expect = 1.7
Identities = 19/51 (37%), Positives = 21/51 (41%)
Query: 35 GDQGKAGGGSPGWGCAGIPDSAPGAGVLQAGAVGPARGGQGAEEVGESAGG 85
G G GG G G AG + GA A A A GG G G S+ G
Sbjct: 256 GGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
Score = 31.6 bits (70), Expect = 2.2
Identities = 23/57 (40%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 35 GDQGKAGGGSPGWGCAGIPDSAPGAG-----VLQAGAVGPARGGQGAEEVGESAGGG 86
G G GGG G G G A GAG A A A GG G G SAG G
Sbjct: 252 GGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 42.7 bits (99), Expect = 0.001
Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 8/145 (5%)
Query: 19 GTSLGGEEAAFEVARPGDQGKAGGGSPGWGCAGIPDSAPGAGVLQAGAVGPARGGQGAEE 78
G + GE+ A + GG +P WG G G +A A G RGG G ++
Sbjct: 290 GAATAGEKPAAKGRGGRGPKSLGGQNPRWGRGGKKPRRRGQKATKAAAAGTKRGGGGQQK 349
Query: 79 ---VGESAGGGEERRVRHPQAPALRLLNRKPQGGSG-----EIKTPENDLQRGRLSRGPR 130
VG + + RR + P+ K +GG E K + ++ R R
Sbjct: 350 AAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGGDKKGLREAKRRGDGRKKPRWQNPRR 409
Query: 131 TAPPAPGMGDRSGQQERSVPHSPGA 155
A AP R G ++ P A
Sbjct: 410 RAQKAPAAKPRGGGSKKPRRRGPKA 434
Score = 34.7 bits (78), Expect = 0.26
Identities = 39/139 (28%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 9 GGQDWACSVAGTSLGGEEAAFEVARPGDQGKAGGGSPGWGCAGIPDSAPGAGVLQAGAVG 68
G Q A S G + GG +P AGG G P G Q A G
Sbjct: 205 GRQREAKSRFGKTRGGRRKKHRRPKPA----AGGAKSRRGGGKKPQKQRRRG--QKAATG 258
Query: 69 PARGGQGAEEVGESAGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSRG 128
G VG+S GGG+++ R Q AL R+ +G E +GR RG
Sbjct: 259 ------GKSRVGKSRGGGDKKLRRQGQNAALAGAKRRGAATAG-----EKPAAKGRGGRG 307
Query: 129 PRTAPPAPGMGDRSGQQER 147
P++ R G++ R
Sbjct: 308 PKSLGGQNPRWGRGGKKPR 326
Score = 32.3 bits (72), Expect = 1.3
Identities = 42/168 (25%), Positives = 62/168 (36%), Gaps = 10/168 (5%)
Query: 7 GGGGQDWACSVAGTSLGGEEAAFEVARPGDQGKAGGGSPGWGCA-GIPDSAP-GAGVLQA 64
GGGGQ A V S + + R AG S G G G+ ++ G G +
Sbjct: 343 GGGGQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGGDKKGLREAKRRGDGRKKP 402
Query: 65 GAVGPARGGQGAEEVGESAGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGR 124
P R Q A GG ++ R R P+A K +GG + +RG+
Sbjct: 403 RWQNPRRRAQKAPAAKPRGGGSKKPRRRGPKA-------AKSRGGKSRSGGGKKPRRRGQ 455
Query: 125 LSRGPRTAPPAPGMGD-RSGQQERSVPHSPGAPVGTSAAAVNGLLHNG 171
+R A GD + G+Q+ S + G + + L G
Sbjct: 456 KARQKAAEAGAESRGDKKQGRQKASAAGTKSRGGGLKSHSGKNLWRRG 503
Score = 31.2 bits (69), Expect = 2.8
Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 39/172 (22%)
Query: 8 GGGQDWACSVAGTSLGG----------EEAAFEVARPG--DQGKAGGGSPGWGCAGIPDS 55
GGG+ A + SLGG + AA +P Q A GS G AG +
Sbjct: 102 GGGEQKAAAAGTKSLGGRGRKPRRRGQKAAATGSKKPRWRAQKSAAAGSKNRG-AGAQKA 160
Query: 56 APGAGVLQAGAVGP---------ARGGQGAEEVGESAGGGEERRVRHPQAPA-------- 98
A AGV G P +R G+ G + G E+++ R +A +
Sbjct: 161 AAAAGVKSQGGEKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDKKGRQREAKSRFGKTRGG 220
Query: 99 LRLLNRKPQGGSGEIKT-------PENDLQRGR--LSRGPRTAPPAPGMGDR 141
R +R+P+ +G K+ P+ +RG+ + G + G GD+
Sbjct: 221 RRKKHRRPKPAAGGAKSRRGGGKKPQKQRRRGQKAATGGKSRVGKSRGGGDK 272
Score = 30.8 bits (68), Expect = 3.7
Identities = 38/134 (28%), Positives = 49/134 (36%), Gaps = 36/134 (26%)
Query: 67 VGPARGGQGAEEVGESAGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLS 126
+G +RGG GA+ G +GG + R GSG K+ S
Sbjct: 720 LGKSRGGGGAKSRG--SGGAKSR-------------------GSGGAKSRSGKKAAASKS 758
Query: 127 RGPRTAPPAPGMGDRSGQQERSVPHSPGAPVGTSAAAVNGLLHNGFHPPPVQPPHVCSRG 186
G A G G +S E++V G AAA G +PP V SRG
Sbjct: 759 HGGGGAKRRRGGGAKSRSGEKAVTAG-----GQKAAAAGGK----------KPPRVKSRG 803
Query: 187 PVGGSDAAPQRLPL 200
G AA + PL
Sbjct: 804 GRGQKAAAGGKKPL 817
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 42.7 bits (99), Expect = 0.001
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Query: 33 RPGDQGKAGGGSPGWGCAG-IPDSAPGAGVLQAGAVGPARGGQGAEEVGESAGGGEERRV 91
+PG G GG PG G AG PD P G P R + G A G E R+
Sbjct: 290 QPGQPGTPGGSRPGPGPAGRFPDQKPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRM 349
Query: 92 RHPQAPALRLLNRKPQGGSGEIKTPEND 119
HP P + PQ + P +
Sbjct: 350 SHPSGPYSQASAAAPQPAAARQPPPPEE 377
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,129,646
Number of Sequences: 37866
Number of extensions: 1593597
Number of successful extensions: 8885
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 661
Number of HSP's that attempted gapping in prelim test: 7437
Number of HSP's gapped (non-prelim): 1916
length of query: 598
length of database: 18,247,518
effective HSP length: 108
effective length of query: 490
effective length of database: 14,157,990
effective search space: 6937415100
effective search space used: 6937415100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.