Guide to the Human Genome
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Name: PANK1 Sequence: fasta or formatted (373aa) NCBI GI: 23510402
Description:

pantothenate kinase 1 isoform beta

Referenced in:

Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Other entries for this name:
alt prot [314aa] pantothenate kinase 1 isoform gamma
alt prot [598aa] pantothenate kinase 1 isoform alpha
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         21           2
 C cysteine            2.9         11           2
 D aspartate           5.4         20           2
 E glutamate           7.0         26           3
 F phenylalanine       5.9         22           1
 G glycine             9.4         35           3
 H histidine           1.6          6           1
 I isoleucine          4.6         17           1
 K lysine              7.8         29           2
 L leucine            11.5         43           2
 M methionine          4.3         16           2
 N asparagine          5.4         20           2
 P proline             2.4          9           1
 Q glutamine           2.1          8           1
 R arginine            3.5         13           1
 S serine              5.6         21           2
 T threonine           5.6         21           2
 V valine              5.1         19           2
 W tryptophan          0.5          2           1
 Y tyrosine            3.8         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pantothenate kinase 1 isoform beta 
PANK1                 0.975   pantothenate kinase 1 isoform alpha 
PANK2                 0.813   pantothenate kinase 2 isoform 1 preproprotein 
PANK3                 0.790   pantothenate kinase 3 
PANK1                 0.689   pantothenate kinase 1 isoform gamma 
PANK2                 0.610   pantothenate kinase 2 isoform 2 
PANK2                 0.610   pantothenate kinase 2 isoform 2 
PANK4                 0.252   pantothenate kinase 4 
TRRAP                 0.015   transformation/transcription domain-associated protei...
CYTH1                 0.008   cytohesin 1 isoform 2 
CYTH1                 0.008   cytohesin 1 isoform 1 
ZFP28                 0.005   zinc finger protein 28 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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