Guide to the Human Genome
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Name: VEGFA Sequence: fasta or formatted (395aa) NCBI GI: 76781481
Description:

vascular endothelial growth factor A isoform b precursor

Referenced in:

Platelets and Megakaryocytes
Receptor Tyrosine Kinases

Other entries for this name:
alt prot [412aa] vascular endothelial growth factor A isoform a precursor
alt prot [389aa] vascular endothelial growth factor A isoform c precursor
alt prot [371aa] vascular endothelial growth factor A isoform d precursor
alt prot [354aa] vascular endothelial growth factor A isoform e precursor
alt prot [327aa] vascular endothelial growth factor A isoform f precursor
alt prot [371aa] vascular endothelial growth factor A isoform g precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         36           3
 C cysteine            4.6         18           2
 D aspartate           3.0         12           1
 E glutamate           9.1         36           5
 F phenylalanine       2.0          8           1
 G glycine            10.1         40           3
 H histidine           3.0         12           2
 I isoleucine          2.0          8           1
 K lysine              6.1         24           2
 L leucine             5.6         22           3
 M methionine          2.0          8           1
 N asparagine          1.8          7           1
 P proline             7.3         29           2
 Q glutamine           4.8         19           1
 R arginine           10.4         41           3
 S serine              7.8         31           2
 T threonine           3.0         12           1
 V valine              4.8         19           2
 W tryptophan          1.5          6           1
 Y tyrosine            1.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vascular endothelial growth factor A isoform b precu... 
VEGFA                 0.986   vascular endothelial growth factor A isoform a precu...
VEGFA                 0.975   vascular endothelial growth factor A isoform c precu...
VEGFA                 0.922   vascular endothelial growth factor A isoform d precu...
VEGFA                 0.903   vascular endothelial growth factor A isoform g precu...
VEGFA                 0.874   vascular endothelial growth factor A isoform e precu...
VEGFA                 0.801   vascular endothelial growth factor A isoform f precu...
PGF                   0.144   placental growth factor, vascular endothelial growth...
VEGFB                 0.098   vascular endothelial growth factor B 
VEGFC                 0.065   vascular endothelial growth factor C preproprotein [H...
FIGF                  0.055   vascular endothelial growth factor D preproprotein [H...
PDGFA                 0.027   platelet-derived growth factor alpha isoform 1 prepr...
LOC100293935          0.025   PREDICTED: hypothetical protein 
LOC100287289          0.025   PREDICTED: hypothetical protein 
LOC100287289          0.025   PREDICTED: hypothetical protein XP_002343656 
COL1A1                0.024   alpha 1 type I collagen preproprotein 
PANK1                 0.024   pantothenate kinase 1 isoform alpha 
COL6A1                0.024   collagen, type VI, alpha 1 precursor 
ADAMTS19              0.024   ADAM metallopeptidase with thrombospondin type 1 mo...
PDGFB                 0.022   platelet-derived growth factor beta isoform 2 prepro...
PDGFB                 0.022   platelet-derived growth factor beta isoform 1 preprop...
TAF4                  0.022   TBP-associated factor 4 
COL2A1                0.022   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.022   collagen, type II, alpha 1 isoform 2 precursor [Hom...
BASP1                 0.021   brain abundant, membrane attached signal protein 1 [...
LOC100133264          0.020   PREDICTED: hypothetical protein 
LOC100133264          0.020   PREDICTED: hypothetical protein 
PDGFC                 0.020   platelet-derived growth factor C precursor 
CIC                   0.019   capicua homolog 
COL5A2                0.017   alpha 2 type V collagen preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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