Guide to the Human Genome
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Name: PANK1 Sequence: fasta or formatted (314aa) NCBI GI: 23510398
Description:

pantothenate kinase 1 isoform gamma

Referenced in:

Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Other entries for this name:
alt prot [598aa] pantothenate kinase 1 isoform alpha
alt prot [373aa] pantothenate kinase 1 isoform beta
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         16           1
 C cysteine            2.5          8           1
 D aspartate           5.1         16           2
 E glutamate           6.7         21           3
 F phenylalanine       6.1         19           1
 G glycine             8.0         25           3
 H histidine           1.9          6           1
 I isoleucine          5.1         16           1
 K lysine              8.3         26           2
 L leucine            11.1         35           2
 M methionine          4.8         15           2
 N asparagine          6.1         19           2
 P proline             2.9          9           1
 Q glutamine           2.2          7           1
 R arginine            3.8         12           1
 S serine              5.4         17           2
 T threonine           5.4         17           2
 V valine              5.1         16           2
 W tryptophan          0.6          2           1
 Y tyrosine            3.8         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pantothenate kinase 1 isoform gamma 
PANK1                 0.821   pantothenate kinase 1 isoform beta 
PANK1                 0.791   pantothenate kinase 1 isoform alpha 
PANK3                 0.688   pantothenate kinase 3 
PANK2                 0.636   pantothenate kinase 2 isoform 1 preproprotein 
PANK2                 0.393   pantothenate kinase 2 isoform 2 
PANK2                 0.393   pantothenate kinase 2 isoform 2 
PANK4                 0.162   pantothenate kinase 4 
TRRAP                 0.013   transformation/transcription domain-associated protei...
CYTH1                 0.010   cytohesin 1 isoform 2 
CYTH1                 0.010   cytohesin 1 isoform 1 
NNMT                  0.006   nicotinamide N-methyltransferase 
ZFP28                 0.006   zinc finger protein 28 
AMPD3                 0.005   adenosine monophosphate deaminase 3 isoform 1A 
AMPD3                 0.005   adenosine monophosphate deaminase 3 isoform 1C [Homo...
AMPD3                 0.005   adenosine monophosphate deaminase 3 isoform 1B [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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