Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 116089312
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116089312 heparan sulfate (glucosamine) 3-O-sulfotransferase
6 [Homo sapiens]
(311 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116089312 heparan sulfate (glucosamine) 3-O-sulfotransferase ... 647 0.0
gi|5174467 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3... 436 e-122
gi|5174465 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3... 428 e-120
gi|5174463 heparan sulfate D-glucosaminyl 3-O-sulfotransferase ... 404 e-113
gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase... 402 e-112
gi|45267824 heparan sulfate (glucosamine) 3-O-sulfotransferase 5... 232 3e-61
gi|4826764 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 1... 228 7e-60
gi|4758766 N-deacetylase/N-sulfotransferase (heparan glucosaminy... 124 1e-28
gi|12007650 heparan sulfate N-deacetylase/N-sulfotransferase 4 [... 119 3e-27
gi|4505353 heparan glucosaminyl N-deacetylase/N-sulfotransferase... 118 6e-27
gi|4505351 N-deacetylase/N-sulfotransferase (heparan glucosaminy... 117 2e-26
gi|45505173 B cell RAG associated protein [Homo sapiens] 54 2e-07
gi|31563386 sulfotransferase family, cytosolic, 2B, member 1 iso... 40 0.003
gi|31563388 sulfotransferase family, cytosolic, 2B, member 1 iso... 40 0.003
gi|239755457 PREDICTED: similar to patatin-like phospholipase do... 39 0.008
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 36 0.038
gi|169790811 SHC (Src homology 2 domain containing) transforming... 36 0.038
gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo sa... 36 0.038
gi|8922785 hypothetical protein LOC55267 [Homo sapiens] 36 0.050
gi|4503519 eukaryotic translation initiation factor 3, subunit 5... 35 0.065
gi|39812378 RAN binding protein 9 [Homo sapiens] 35 0.11
gi|32698724 patatin-like phospholipase domain containing 2 [Homo... 35 0.11
gi|148536864 SWI/SNF-related matrix-associated actin-dependent r... 35 0.11
gi|239754052 PREDICTED: hypothetical protein [Homo sapiens] 34 0.19
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 34 0.19
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 34 0.19
gi|27369497 carbohydrate (N-acetylglucosamine-6-O) sulfotransfer... 34 0.19
gi|154146199 sal-like 3 [Homo sapiens] 34 0.19
gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens] 33 0.25
gi|169167904 PREDICTED: similar to hCG17429 [Homo sapiens] 33 0.25
>gi|116089312 heparan sulfate (glucosamine) 3-O-sulfotransferase 6
[Homo sapiens]
Length = 311
Score = 647 bits (1668), Expect = 0.0
Identities = 311/311 (100%), Positives = 311/311 (100%)
Query: 1 MLLVALVLGAYCLCALPGRCPPAARAPAPAPAPSEPSSSVHRPGAPGLPLASGPGRRRFP 60
MLLVALVLGAYCLCALPGRCPPAARAPAPAPAPSEPSSSVHRPGAPGLPLASGPGRRRFP
Sbjct: 1 MLLVALVLGAYCLCALPGRCPPAARAPAPAPAPSEPSSSVHRPGAPGLPLASGPGRRRFP 60
Query: 61 QALIVGVKKGGTRALLEFLRLHPDVRALGSEPHFFDRCYERGLAWYRSLMPRTLDGQITM 120
QALIVGVKKGGTRALLEFLRLHPDVRALGSEPHFFDRCYERGLAWYRSLMPRTLDGQITM
Sbjct: 61 QALIVGVKKGGTRALLEFLRLHPDVRALGSEPHFFDRCYERGLAWYRSLMPRTLDGQITM 120
Query: 121 EKTPSYFVTREAPRRIHAMSPDTKLIVVVRNPVTRAISDYAQTLSKTPGLPSFRALAFRH 180
EKTPSYFVTREAPRRIHAMSPDTKLIVVVRNPVTRAISDYAQTLSKTPGLPSFRALAFRH
Sbjct: 121 EKTPSYFVTREAPRRIHAMSPDTKLIVVVRNPVTRAISDYAQTLSKTPGLPSFRALAFRH 180
Query: 181 GLGPVDTAWSAVRIGLYAQHLDHWLRYFPLSHFLFVSGERLVSDPAGEVGRVQDFLGLKR 240
GLGPVDTAWSAVRIGLYAQHLDHWLRYFPLSHFLFVSGERLVSDPAGEVGRVQDFLGLKR
Sbjct: 181 GLGPVDTAWSAVRIGLYAQHLDHWLRYFPLSHFLFVSGERLVSDPAGEVGRVQDFLGLKR 240
Query: 241 VVTDKHFYFNATKGFPCLKKAQGGSRPRCLGKSKGRPHPRVPQALVRRLQEFYRPFNRRF 300
VVTDKHFYFNATKGFPCLKKAQGGSRPRCLGKSKGRPHPRVPQALVRRLQEFYRPFNRRF
Sbjct: 241 VVTDKHFYFNATKGFPCLKKAQGGSRPRCLGKSKGRPHPRVPQALVRRLQEFYRPFNRRF 300
Query: 301 YQMTGQDFGWG 311
YQMTGQDFGWG
Sbjct: 301 YQMTGQDFGWG 311
>gi|5174467 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3B1
[Homo sapiens]
Length = 390
Score = 436 bits (1121), Expect = e-122
Identities = 208/302 (68%), Positives = 246/302 (81%), Gaps = 7/302 (2%)
Query: 16 LPGRCPPAARAPAP------APAPSEPSSSVHRPGAPGLPLASGPGRRRFPQALIVGVKK 69
LP R PPA + A +P E S V +P SG G ++ PQA+I+GVKK
Sbjct: 88 LPFRAPPATPLASGKEMAEGAASPEEQSPEVPDSPSPISSFFSGSGSKQLPQAIIIGVKK 147
Query: 70 GGTRALLEFLRLHPDVRALGSEPHFFDRCYERGLAWYRSLMPRTLDGQITMEKTPSYFVT 129
GGTRALLEFLR+HPDVRA+G+EPHFFDR Y++GLAWYR LMPRTLDGQITMEKTPSYFVT
Sbjct: 148 GGTRALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYRDLMPRTLDGQITMEKTPSYFVT 207
Query: 130 REAPRRIHAMSPDTKLIVVVRNPVTRAISDYAQTLSKTPGLPSFRALAFRHGL-GPVDTA 188
REAP RI AMS DTKLIVVVR+PVTRAISDY QTLSK P +P+F +L F++ G +DT+
Sbjct: 208 REAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRPDIPTFESLTFKNRTAGLIDTS 267
Query: 189 WSAVRIGLYAQHLDHWLRYFPLSHFLFVSGERLVSDPAGEVGRVQDFLGLKRVVTDKHFY 248
WSA++IG+YA+HL+HWLR+FP+ LFVSGERL+SDPAGE+GRVQDFLGLKR++TDKHFY
Sbjct: 268 WSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITDKHFY 327
Query: 249 FNATKGFPCLKKAQGGSRPRCLGKSKGRPHPRVPQALVRRLQEFYRPFNRRFYQMTGQDF 308
FN TKGFPCLKKA+G SRP CLGK+KGR HP + + +VRRL+EFYRPFN +FYQMTG DF
Sbjct: 328 FNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVVRRLREFYRPFNLKFYQMTGHDF 387
Query: 309 GW 310
GW
Sbjct: 388 GW 389
>gi|5174465 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3A1
[Homo sapiens]
Length = 406
Score = 428 bits (1100), Expect = e-120
Identities = 205/305 (67%), Positives = 241/305 (79%), Gaps = 19/305 (6%)
Query: 25 RAPAPAPAPSEPSSSVHRPGAPGLPLASGPGR------------------RRFPQALIVG 66
R PAP E + PG G P SG G ++ PQA+I+G
Sbjct: 100 RPPAPRDDGEEAAWEEESPGLSGGPGGSGAGSTVAEAPPGTLALLLDEGSKQLPQAIIIG 159
Query: 67 VKKGGTRALLEFLRLHPDVRALGSEPHFFDRCYERGLAWYRSLMPRTLDGQITMEKTPSY 126
VKKGGTRALLEFLR+HPDVRA+G+EPHFFDR Y++GLAWYR LMPRTLDGQITMEKTPSY
Sbjct: 160 VKKGGTRALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYRDLMPRTLDGQITMEKTPSY 219
Query: 127 FVTREAPRRIHAMSPDTKLIVVVRNPVTRAISDYAQTLSKTPGLPSFRALAFRHGL-GPV 185
FVTREAP RI AMS DTKLIVVVR+PVTRAISDY QTLSK P +P+F +L F++ G +
Sbjct: 220 FVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRPDIPTFESLTFKNRTAGLI 279
Query: 186 DTAWSAVRIGLYAQHLDHWLRYFPLSHFLFVSGERLVSDPAGEVGRVQDFLGLKRVVTDK 245
DT+WSA++IG+YA+HL+HWLR+FP+ LFVSGERL+SDPAGE+GRVQDFLGLKR++TDK
Sbjct: 280 DTSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITDK 339
Query: 246 HFYFNATKGFPCLKKAQGGSRPRCLGKSKGRPHPRVPQALVRRLQEFYRPFNRRFYQMTG 305
HFYFN TKGFPCLKKA+G SRP CLGK+KGR HP + + +VRRL+EFYRPFN +FYQMTG
Sbjct: 340 HFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVVRRLREFYRPFNLKFYQMTG 399
Query: 306 QDFGW 310
DFGW
Sbjct: 400 HDFGW 404
>gi|5174463 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 2
[Homo sapiens]
Length = 367
Score = 404 bits (1037), Expect = e-113
Identities = 193/294 (65%), Positives = 233/294 (79%), Gaps = 3/294 (1%)
Query: 20 CPPAARAPAPAPAPSEPSSSVHRPGAPGLPLASGP--GRRRFPQALIVGVKKGGTRALLE 77
C P+ P+ APS P+++V P G + P G +R PQALIVGVKKGGTRA+LE
Sbjct: 73 CDPSGPTPSEPSAPSAPAAAVPAPRLSGSNHSGSPKLGTKRLPQALIVGVKKGGTRAVLE 132
Query: 78 FLRLHPDVRALGSEPHFFDRCYERGLAWYRSLMPRTLDGQITMEKTPSYFVTREAPRRIH 137
F+R+HPDVRALG+EPHFFDR Y RGL WYRSLMPRTL+ QIT+EKTPSYFVT+EAPRRI
Sbjct: 133 FIRVHPDVRALGTEPHFFDRNYGRGLDWYRSLMPRTLESQITLEKTPSYFVTQEAPRRIF 192
Query: 138 AMSPDTKLIVVVRNPVTRAISDYAQTLSKTPGLPSFRALAFRH-GLGPVDTAWSAVRIGL 196
MS DTKLIVVVRNPVTRAISDY QTLSK P +P+F L+FR+ LG VD +W+A+RIG+
Sbjct: 193 NMSRDTKLIVVVRNPVTRAISDYTQTLSKKPDIPTFEGLSFRNRTLGLVDVSWNAIRIGM 252
Query: 197 YAQHLDHWLRYFPLSHFLFVSGERLVSDPAGEVGRVQDFLGLKRVVTDKHFYFNATKGFP 256
Y HL+ WL+YFPL+ FVSGERL++DPAGE+GRVQDFLG+KR +TDKHFYFN TKGFP
Sbjct: 253 YVLHLESWLQYFPLAQIHFVSGERLITDPAGEMGRVQDFLGIKRFITDKHFYFNKTKGFP 312
Query: 257 CLKKAQGGSRPRCLGKSKGRPHPRVPQALVRRLQEFYRPFNRRFYQMTGQDFGW 310
CLKK + PRCLGKSKGR H ++ ++ +L+EFYRP+N +FY+ GQDF W
Sbjct: 313 CLKKTESSLLPRCLGKSKGRTHVQIDPEVIDQLREFYRPYNIKFYETVGQDFRW 366
>gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 4
[Homo sapiens]
Length = 456
Score = 402 bits (1033), Expect = e-112
Identities = 191/275 (69%), Positives = 227/275 (82%), Gaps = 4/275 (1%)
Query: 37 SSSVHRPGAPGLPLASGPGRRRFPQALIVGVKKGGTRALLEFLRLHPDVRALGSEPHFFD 96
+ S R GA P G ++ PQALI+GVKKGGTRALLE +R+HPDVRA+G EPHFFD
Sbjct: 178 NGSSERGGAVSTP---DYGEKKLPQALIIGVKKGGTRALLEAIRVHPDVRAVGVEPHFFD 234
Query: 97 RCYERGLAWYRSLMPRTLDGQITMEKTPSYFVTREAPRRIHAMSPDTKLIVVVRNPVTRA 156
R YE+GL WYR++MP+TLDGQITMEKTPSYFVT EAP+RIH+M+ D KLIVVVRNPVTRA
Sbjct: 235 RNYEKGLEWYRNVMPKTLDGQITMEKTPSYFVTNEAPKRIHSMAKDIKLIVVVRNPVTRA 294
Query: 157 ISDYAQTLSKTPGLPSFRALAFRHG-LGPVDTAWSAVRIGLYAQHLDHWLRYFPLSHFLF 215
ISDY QTLSK P +P+F LAF++ LG +D +WSA+RIG+YA HL++WL+YFPLS LF
Sbjct: 295 ISDYTQTLSKKPEIPTFEVLAFKNRTLGLIDASWSAIRIGIYALHLENWLQYFPLSQILF 354
Query: 216 VSGERLVSDPAGEVGRVQDFLGLKRVVTDKHFYFNATKGFPCLKKAQGGSRPRCLGKSKG 275
VSGERL+ DPAGE+ +VQDFLGLKRVVT+KHFYFN TKGFPCLKK + S PRCLGKSKG
Sbjct: 355 VSGERLIVDPAGEMAKVQDFLGLKRVVTEKHFYFNKTKGFPCLKKPEDSSAPRCLGKSKG 414
Query: 276 RPHPRVPQALVRRLQEFYRPFNRRFYQMTGQDFGW 310
R HPR+ ++ RL++FY+PFN FYQMTGQDF W
Sbjct: 415 RTHPRIDPDVIHRLRKFYKPFNLMFYQMTGQDFQW 449
>gi|45267824 heparan sulfate (glucosamine) 3-O-sulfotransferase 5
[Homo sapiens]
Length = 346
Score = 232 bits (592), Expect = 3e-61
Identities = 116/260 (44%), Positives = 164/260 (63%), Gaps = 8/260 (3%)
Query: 57 RRFPQALIVGVKKGGTRALLEFLRLHPDVRALGSEPHFFDRC--YERGLAWYRSLMPRTL 114
++ P+A+I+GV+KGGTRALLE L LHP V E HFFD Y +G+ WYR MP +
Sbjct: 88 QQLPKAIIIGVRKGGTRALLEMLNLHPAVVKASQEIHFFDNDENYGKGIEWYRKKMPFSY 147
Query: 115 DGQITMEKTPSYFVTREAPRRIHAMSPDTKLIVVVRNPVTRAISDYAQTLS----KTPGL 170
QIT+EK+P+YF+T E P RI+ M+ KL+++VR P TRAISDY Q L K
Sbjct: 148 PQQITIEKSPAYFITEEVPERIYKMNSSIKLLIIVREPTTRAISDYTQVLEGKERKNKTY 207
Query: 171 PSFRALAFRHGLGPVDTAWSAVRIGLYAQHLDHWLRYFPLSHFLFVSGERLVSDPAGEVG 230
F LA V+T + AVR +Y +HL+ WL+YFP+ F V G+RL+++P E+
Sbjct: 208 YKFEKLAIDPNTCEVNTKYKAVRTSIYTKHLERWLKYFPIEQFHVVDGDRLITEPLPELQ 267
Query: 231 RVQDFLGLKRVVTDKHFYFNATKGFPCLKKAQGGSRPRCLGKSKGRPHPRVPQALVRRLQ 290
V+ FL L ++ + YFNAT+GF CL+ +CL SKGR HP V +++ +L+
Sbjct: 268 LVEKFLNLPPRISQYNLYFNATRGFYCLR--FNIIFNKCLAGSKGRIHPEVDPSVITKLR 325
Query: 291 EFYRPFNRRFYQMTGQDFGW 310
+F+ PFN++FYQ+TG+ W
Sbjct: 326 KFFHPFNQKFYQITGRTLNW 345
>gi|4826764 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 1
precursor [Homo sapiens]
Length = 307
Score = 228 bits (580), Expect = 7e-60
Identities = 126/316 (39%), Positives = 180/316 (56%), Gaps = 18/316 (5%)
Query: 3 LVALVLGAYCLCALPGRCP--PAARAPAPAPAPSEPSSSVHRPGAPGLPLASGPGRRRFP 60
+ AL+LGA L A P P PA + R G +A ++ P
Sbjct: 1 MAALLLGAVLLVAQPQLVPSRPAELGQQELLRKAGTLQDDVRDG-----VAPNGSAQQLP 55
Query: 61 QALIVGVKKGGTRALLEFLRLHPDVRALGSEPHFFD--RCYERGLAWYRSLMPRTLDGQI 118
Q +I+GV+KGGTRALLE L LHPDV A +E HFFD Y GL WY S MP + Q+
Sbjct: 56 QTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSHGLGWYLSQMPFSWPHQL 115
Query: 119 TMEKTPSYFVTREAPRRIHAMSPDTKLIVVVRNPVTRAISDYAQT----LSKTPGLPSFR 174
T+EKTP+YF + + P R+++M+P +L++++R+P R +SDY Q + K PS
Sbjct: 116 TVEKTPAYFTSPKVPERVYSMNPSIRLLLILRDPSERVLSDYTQVFYNHMQKHKPYPSIE 175
Query: 175 ALAFRHGLGPVDTAWSAVRIGLYAQHLDHWLRYFPLSHFLFVSGERLVSDPAGEVGRVQD 234
R G VD + A+ LY H+ +WLR+FPL H V G+RL+ DP E+ +V+
Sbjct: 176 EFLVRDGRLNVD--YKALNRSLYHVHMQNWLRFFPLRHIHIVDGDRLIRDPFPEIQKVER 233
Query: 235 FLGLKRVVTDKHFYFNATKGFPCLKKAQGGSRPRCLGKSKGRPHPRVPQALVRRLQEFYR 294
FL L + +FYFN TKGF CL+ + R RCL +SKGR HP+V L+ +L E++
Sbjct: 234 FLKLSPQINASNFYFNKTKGFYCLRDS---GRDRCLHESKGRAHPQVDPKLLNKLHEYFH 290
Query: 295 PFNRRFYQMTGQDFGW 310
N++F+++ G+ F W
Sbjct: 291 EPNKKFFELVGRTFDW 306
>gi|4758766 N-deacetylase/N-sulfotransferase (heparan glucosaminyl)
3 [Homo sapiens]
Length = 873
Score = 124 bits (311), Expect = 1e-28
Identities = 83/258 (32%), Positives = 124/258 (48%), Gaps = 22/258 (8%)
Query: 58 RFPQALIVGVKKGGTRALLEFLRLHPDVRALGSEPHFFDRC-------YERGLAWYRSL- 109
R P+ L++G +K GT AL FL +HP + + P F+ Y RG+ WY
Sbjct: 594 RLPKFLVIGPQKTGTTALYLFLVMHPSILSNSPSPKTFEEVQFFNRNNYHRGIDWYMDFF 653
Query: 110 -MPRTLDGQITMEKTPSYFVTREAPRRIHAMSPDTKLIVVVRNPVTRAISDYAQTLSKTP 168
+P + EK+ +YF + EAP+R ++ P K+I ++ +P RA S Y S
Sbjct: 654 PVPSNVTTDFLFEKSANYFHSEEAPKRAASLVPKAKIITILIDPSDRAYSWYQHQRSHED 713
Query: 169 GLPSFRALAFRHGLGPVDTAWSAVRI--------GLYAQHLDHWLRYFPLSHFLFVSGER 220
P+ +F + A S +R G YA H++ WL YFP L + G++
Sbjct: 714 --PAALKFSFYEVISAGPRAPSELRALQKRCLVPGWYASHIERWLVYFPPFQLLIIDGQQ 771
Query: 221 LVSDPAGEVGRVQDFLG-LKRVVTDKHFYFNATKGFPCLKKAQGGSRPRCLGKSKGRPHP 279
L +DPA + VQ FLG L + F++ KGF C +G + +CLGKSKGR +P
Sbjct: 772 LRTDPATVMDEVQKFLGVLPHYNYSEALTFDSHKGFWCQLLEEG--KTKCLGKSKGRKYP 829
Query: 280 RVPQALVRRLQEFYRPFN 297
+ L +YR N
Sbjct: 830 PMDSDSRTFLSSYYRDHN 847
>gi|12007650 heparan sulfate N-deacetylase/N-sulfotransferase 4
[Homo sapiens]
Length = 872
Score = 119 bits (299), Expect = 3e-27
Identities = 84/260 (32%), Positives = 123/260 (47%), Gaps = 30/260 (11%)
Query: 60 PQALIVGVKKGGTRALLEFLRLHPDVRALGSEPHFFDRC-------YERGLAWYRSLMPR 112
P+ L++G +K GT AL FL +HP + + P F+ Y +G+ WY P
Sbjct: 595 PKFLVIGPQKTGTTALYLFLLMHPSIISNLPSPKTFEEVQFFNGNNYHKGIDWYMDFFPT 654
Query: 113 TLD--GQITMEKTPSYFVTREAPRRIHAMSPDTKLIVVVRNPVTRAISDYAQTLSKTPGL 170
+ EK+ +YF + EAPRR ++ P K+I ++ +P RA S Y S
Sbjct: 655 PSNTTSDFLFEKSANYFHSEEAPRRAASLVPKAKIITILIDPSDRAYSWYQHQRSHED-- 712
Query: 171 PSFRALAFRHGLGPVDTAWSAVRI--------GLYAQHLDHWLRYFPLSHFLFVSGERLV 222
P+ F + A S ++ G YA H++ WL YF S L + G++L
Sbjct: 713 PAALRFNFYEVISTGHWAPSDLKTLQRRCLVPGWYAVHIERWLTYFATSQLLIIDGQQLR 772
Query: 223 SDPAGEVGRVQDFLGLKRVVTDKHFY-----FNATKGFPCLKKAQGGSRPRCLGKSKGRP 277
SDPA + VQ FLG VT ++ Y F+ KGF C + G + +CLGKSKGR
Sbjct: 773 SDPATVMDEVQKFLG----VTPRYNYSEALTFDPQKGFWC--QLLEGGKTKCLGKSKGRK 826
Query: 278 HPRVPQALVRRLQEFYRPFN 297
+P + L +YR N
Sbjct: 827 YPPMDPESRTFLSNYYRDHN 846
>gi|4505353 heparan glucosaminyl N-deacetylase/N-sulfotransferase 2
[Homo sapiens]
Length = 883
Score = 118 bits (296), Expect = 6e-27
Identities = 83/258 (32%), Positives = 118/258 (45%), Gaps = 22/258 (8%)
Query: 58 RFPQALIVGVKKGGTRALLEFLRLHPDVRALGSEPHFFDRC-------YERGLAWYRSL- 109
R P+ LIVG +K GT A+ FL LHP V + P F+ Y +G+ WY
Sbjct: 602 RLPKFLIVGPQKTGTTAIHFFLSLHPAVTSSFPSPSTFEEIQFFNSPNYHKGIDWYMDFF 661
Query: 110 -MPRTLDGQITMEKTPSYFVTREAPRRIHAMSPDTKLIVVVRNPVTRAISDYAQTLSKTP 168
+P EK+ +YF + PRR A+ P K+I V+ NP RA S Y +
Sbjct: 662 PVPSNASTDFLFEKSATYFDSEVVPRRGAALLPRAKIITVLTNPADRAYSWYQH--QRAH 719
Query: 169 GLPSFRALAFRHGLGPVDTAWSAVRI--------GLYAQHLDHWLRYFPLSHFLFVSGER 220
G P F + A+R G Y+ HL WL Y+P L V G+
Sbjct: 720 GDPVALNYTFYQVISASSQTPLALRSLQNRCLVPGYYSTHLQRWLTYYPSGQLLIVDGQE 779
Query: 221 LVSDPAGEVGRVQDFLGLKRVVT-DKHFYFNATKGFPCLKKAQGGSRPRCLGKSKGRPHP 279
L ++PA + +Q FLG+ + + F+ KGF C + G + RCLG+SKGR +P
Sbjct: 780 LRTNPAASMESIQKFLGITPFLNYTRTLRFDDDKGFWC--QGLEGGKTRCLGRSKGRRYP 837
Query: 280 RVPQALVRRLQEFYRPFN 297
+ L +F+R N
Sbjct: 838 DMDTESRLFLTDFFRNHN 855
>gi|4505351 N-deacetylase/N-sulfotransferase (heparan glucosaminyl)
1 [Homo sapiens]
Length = 882
Score = 117 bits (292), Expect = 2e-26
Identities = 80/258 (31%), Positives = 121/258 (46%), Gaps = 22/258 (8%)
Query: 58 RFPQALIVGVKKGGTRALLEFLRLHPDVRALGSEPHFFDRC-------YERGLAWYRSL- 109
RFP+ LI+G +K GT AL FL +HPD+ + F+ Y +G+ WY
Sbjct: 603 RFPKLLIIGPQKTGTTALYLFLGMHPDLSSNYPSSETFEEIQFFNGHNYHKGIDWYMEFF 662
Query: 110 -MPRTLDGQITMEKTPSYFVTREAPRRIHAMSPDTKLIVVVRNPVTRAISDYAQTLSKTP 168
+P EK+ +YF + APRR A+ P K++ ++ NP RA S Y +
Sbjct: 663 PIPSNTTSDFYFEKSANYFDSEVAPRRAAALLPKAKVLTILINPADRAYSWYQH--QRAH 720
Query: 169 GLPSFRALAFRHGLGPVDTAWSAVRI--------GLYAQHLDHWLRYFPLSHFLFVSGER 220
P F + A S +R G YA H++ WL + + L + G+
Sbjct: 721 DDPVALKYTFHEVITAGSDASSKLRALQNRCLVPGWYATHIERWLSAYHANQILVLDGKL 780
Query: 221 LVSDPAGEVGRVQDFLGLKRVVT-DKHFYFNATKGFPCLKKAQGGSRPRCLGKSKGRPHP 279
L ++PA + VQ FLG+ + K F+ KGF C + G + +CLGKSKGR +P
Sbjct: 781 LRTEPAKVMDMVQKFLGVTNTIDYHKTLAFDPKKGFWC--QLLEGGKTKCLGKSKGRKYP 838
Query: 280 RVPQALVRRLQEFYRPFN 297
+ L+++YR N
Sbjct: 839 EMDLDSRAFLKDYYRDHN 856
>gi|45505173 B cell RAG associated protein [Homo sapiens]
Length = 561
Score = 53.9 bits (128), Expect = 2e-07
Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 36/196 (18%)
Query: 136 IHAMSPDTKLIVVVRNPVTRAISDYAQTLSKTPGLPSF--------------------RA 175
IHA P+ +LIV++R+PV R SDY S F RA
Sbjct: 378 IHAFQPNARLIVMLRDPVERLYSDYLYFASSNKSADDFHEKVTEALQLFENCMLDYSLRA 437
Query: 176 LAFRHGLGPVDTAWSAVRIGLYAQHLDHWLRYFPLSHFLFVSGERLVSDPAGEVGRVQDF 235
+ + L + +++GLYA +L WL F FL + E S+ + +V F
Sbjct: 438 CVYNNTLN--NAMPVRLQVGLYAVYLLDWLSVFDKQQFLILRLEDHASNVKYTMHKVFQF 495
Query: 236 LGLKRVVTDKHFYFNATKGFPCLKKAQGGSRPRCLGKSKGRPHPRVPQALVRRLQEFYRP 295
L L + + K + K+ + R ++ G P + Q ++R +FYRP
Sbjct: 496 LNLGPL---------SEKQEALMTKSPASNARRPEDRNLGPMWP-ITQKILR---DFYRP 542
Query: 296 FNRRFYQMTGQD-FGW 310
FN R Q+ + F W
Sbjct: 543 FNARLAQVLADEAFAW 558
Score = 33.1 bits (74), Expect = 0.32
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 57 RRFPQALIVGVKKGGTRALLEFLRLHPDVR-ALGSEPHFFDR 97
R P I+G K GT L + LRLHP+V+ + EPH++ R
Sbjct: 251 RCLPHFYIIGQPKCGTTDLYDRLRLHPEVKFSAIKEPHWWTR 292
>gi|31563386 sulfotransferase family, cytosolic, 2B, member 1
isoform b [Homo sapiens]
Length = 365
Score = 40.0 bits (92), Expect = 0.003
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 140 SPDTKLIVVVRNPVTRAISDYAQTLS----KTPGLPSFRALAFRHGLGPVDTAWSAVRIG 195
S K+I + RNP +S Y + K PG P F G V+ G
Sbjct: 137 SSKAKVIYMGRNPRDVVVSLYHYSKIAGQLKDPGTPDQFLRDFLKG---------EVQFG 187
Query: 196 LYAQHLDHWLRYFPLSHFLFVSGERLVSDPAGEVGRVQDFLG 237
+ H+ WLR +FLF++ E L D G V R+ FLG
Sbjct: 188 SWFDHIKGWLRMKGKDNFLFITYEELQQDLQGSVERICGFLG 229
>gi|31563388 sulfotransferase family, cytosolic, 2B, member 1
isoform a [Homo sapiens]
Length = 350
Score = 40.0 bits (92), Expect = 0.003
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 140 SPDTKLIVVVRNPVTRAISDYAQTLS----KTPGLPSFRALAFRHGLGPVDTAWSAVRIG 195
S K+I + RNP +S Y + K PG P F G V+ G
Sbjct: 122 SSKAKVIYMGRNPRDVVVSLYHYSKIAGQLKDPGTPDQFLRDFLKG---------EVQFG 172
Query: 196 LYAQHLDHWLRYFPLSHFLFVSGERLVSDPAGEVGRVQDFLG 237
+ H+ WLR +FLF++ E L D G V R+ FLG
Sbjct: 173 SWFDHIKGWLRMKGKDNFLFITYEELQQDLQGSVERICGFLG 214
>gi|239755457 PREDICTED: similar to patatin-like phospholipase
domain containing 2 [Homo sapiens]
Length = 226
Score = 38.5 bits (88), Expect = 0.008
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 6 LVLGAYCLCALPGRCPPAA---RAPA-PAPAPSEPSSSVHRPGAPGLPLASGPGRRRFP 60
L+LG +C PP A RAPA PAPAP++P+S H+P P PL S P P
Sbjct: 165 LLLGLFCTNVA---FPPEALRMRAPADPAPAPADPASPQHQPAGPA-PLLSTPAPEARP 219
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 36.2 bits (82), Expect = 0.038
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 19 RCPPAARAPAPAPAPSEPSSSVHRPGAPGLPLASG-----PGRRRFPQALIVGVKKGGTR 73
R PAAR P PA + + S+ P LP G PG + P+ L K GG
Sbjct: 118 RAAPAARGSRPGPAGTMAAGSI--TTLPALPEDGGSGAFPPGHFKDPKRLY--CKNGGF- 172
Query: 74 ALLEFLRLHPDVRALG----SEPH 93
FLR+HPD R G S+PH
Sbjct: 173 ----FLRIHPDGRVDGVREKSDPH 192
>gi|169790811 SHC (Src homology 2 domain containing) transforming
protein 2 [Homo sapiens]
Length = 582
Score = 36.2 bits (82), Expect = 0.038
Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 13/130 (10%)
Query: 15 ALPGRCPPAARAPAPAPAPSEPSSSVHRPGAPGLPLASGPGRRRFPQALIVGVKKGGTRA 74
A+ G C P AP P PA S + R G+ G A+G G A ++KG
Sbjct: 78 AVLGACEPRCAAPCPLPALSRCRGAGSR-GSRGGRGAAGSGD---AAAAAEWIRKGSFIH 133
Query: 75 LLEFLRLHPDVRALGSEPHFFDRCYERGLAWYRSLMPRTLDGQITMEKTPSYFVTREAPR 134
LHPD R LG + R Y + RS+ R+LD + VTREA
Sbjct: 134 KPAHGWLHPDARVLGPGVSYVVR-YMGCIEVLRSM--RSLDFNTRTQ------VTREAIN 184
Query: 135 RIHAMSPDTK 144
R+H P +
Sbjct: 185 RLHEAVPGVR 194
>gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo
sapiens]
Length = 331
Score = 36.2 bits (82), Expect = 0.038
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 3 LVALVLGAYCLC--ALPGRCPPAARAPAP----APAPSEPSSSVHR------PGAPGLPL 50
LVAL+ A+ LC A+PG AR P P + AP EPSS + + P AP P
Sbjct: 133 LVALLGSAFQLCRDAVPGEAALQARVPEPWVPPSSAPREPSSPLPKFEAQAPPSAPPAPR 192
Query: 51 ASGPGRRRFP 60
A R + P
Sbjct: 193 AEAEVRPKIP 202
>gi|8922785 hypothetical protein LOC55267 [Homo sapiens]
Length = 138
Score = 35.8 bits (81), Expect = 0.050
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Query: 20 CPPAARAPAPAPAPSEPSSSVHRPGAPGLPLASGPGRR-RFPQA 62
CPP P PA AP+ P + RP A GPGRR R PQ+
Sbjct: 11 CPPLCLPPLPASAPTSPPNPATRP-------APGPGRRARCPQS 47
>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Homo sapiens]
Length = 357
Score = 35.4 bits (80), Expect = 0.065
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 15 ALPGRCPPAARAPAPAPAP---SEPSSSVHRPGAPGLPLASGPGRRRFPQALIVGVKKGG 71
++P P A AP PA AP S+P+++ APG AS + P + G G
Sbjct: 25 SVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAPGQTPASAQAPAQTPAPALPGPALPG 84
Query: 72 TRALLEFLRLHPDVRA 87
+RLHP + A
Sbjct: 85 PFPGGRVVRLHPVILA 100
Score = 30.4 bits (67), Expect = 2.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 15 ALPGRCPPAARAPAPAPAPSEPSSSVHRPGAPGLPLAS 52
A+P PPA P PA AP+ + P A +P A+
Sbjct: 5 AVPVSAPPATPTPVPAAAPASVPAPTPAPAAAPVPAAA 42
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 34.7 bits (78), Expect = 0.11
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 21 PPAARAPAPAPAPSEPSSSVHRP--GAPGLP-LASGPG 55
PPA AP P P P P +S P G P P LA+GPG
Sbjct: 76 PPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPG 113
>gi|32698724 patatin-like phospholipase domain containing 2 [Homo
sapiens]
Length = 504
Score = 34.7 bits (78), Expect = 0.11
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 6 LVLGAYCLCALPGRCPPAA---RAPA-PAPAPSEPSSSVHRPGAPGLPLASGPGRRRFP 60
L+LG +C PP A RAPA PAPAP++P+S H+ P PL S P P
Sbjct: 443 LLLGLFCTNVA---FPPEALRMRAPADPAPAPADPASPQHQLAGPA-PLLSTPAPEARP 497
>gi|148536864 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d2 isoform 1 [Homo sapiens]
Length = 531
Score = 34.7 bits (78), Expect = 0.11
Identities = 28/74 (37%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 4 VALVLGAYCLCALPGRCP-PAARAPAPAPAPSEPSSSVHRPGAPGLPLAS------GPGR 56
VA LGA A PG P PA R P PA P ++ RP P P A PG
Sbjct: 21 VAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGN 80
Query: 57 RRFPQALIVGVKKG 70
R L VG G
Sbjct: 81 RMPMAGLQVGPPAG 94
>gi|239754052 PREDICTED: hypothetical protein [Homo sapiens]
Length = 296
Score = 33.9 bits (76), Expect = 0.19
Identities = 32/112 (28%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 17 PGRCPPAARAPAPAPAPSEPSSSVHRPGAPGLPLASGPGRRRFPQALIVGVKKGGTRALL 76
P P R +P P+ RP G P A GP RR L++ +G R
Sbjct: 149 PYGIPADRRQLDASPGSRRPALVCARPSPQGPPTAGGPRRRSVSAGLVLAGARGPARP-- 206
Query: 77 EFLRLHPDVRA-------LGSEPHFFDRCYERGLAWYRSLMPRTLDGQITME 121
R HP VRA L P R ER + R L G++ E
Sbjct: 207 --SRPHPAVRAGERERTHLRRAPGAAGRARERRRSRANEWSRRLLSGELRPE 256
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 33.9 bits (76), Expect = 0.19
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 17 PGRCPPAARAPAPAPAPSEPSSSVHRPGAPGLPLASGPGRRRFPQALIVGVKKGGTRAL 75
P P AP+P P P+ PSS RP P SGP R P + + + R L
Sbjct: 102 PRGAPAVPAAPSPGPLPARPSSPPPRPSLP-----SGPHRPVLPPSALAAPRPPLARPL 155
Score = 31.2 bits (69), Expect = 1.2
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 9 GAYCLCALPGRCPPAARAPAPAPAPSEPSSSVHRPGAPGLPLAS--GPGRRRFPQALI 64
GA + A P P AR +P P PS PS HRP P LA+ P R PQ +
Sbjct: 104 GAPAVPAAPSPGPLPARPSSPPPRPSLPSGP-HRPVLPPSALAAPRPPLARPLPQGSV 160
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 33.9 bits (76), Expect = 0.19
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 17 PGRCPPAARAPAPAPAPSEPSSSVHRPGAPGLPLASGPGRRRFPQALIVGVKKGGTRAL 75
P P AP+P P P+ PSS RP P SGP R P + + + R L
Sbjct: 102 PRGAPAVPAAPSPGPLPARPSSPPPRPSLP-----SGPHRPVLPPSALAAPRPPLARPL 155
Score = 31.2 bits (69), Expect = 1.2
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 9 GAYCLCALPGRCPPAARAPAPAPAPSEPSSSVHRPGAPGLPLAS--GPGRRRFPQALI 64
GA + A P P AR +P P PS PS HRP P LA+ P R PQ +
Sbjct: 104 GAPAVPAAPSPGPLPARPSSPPPRPSLPSGP-HRPVLPPSALAAPRPPLARPLPQGSV 160
>gi|27369497 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase
2 [Homo sapiens]
Length = 530
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 180 HGLGPVDTAWSAVRIGLY-AQHLDHWLRYFPLSHFLFVSGERLVSDPAGEVGRVQDFLGL 238
H LG ++ +++ L A WL+ H+L V E LV DP + RV DF+GL
Sbjct: 390 HALGAMEVICNSMAKTLQTALQPPDWLQ----GHYLVVRYEDLVGDPVKTLRRVYDFVGL 445
Query: 239 KRVVTDKHFYFNATKG 254
+ F N T G
Sbjct: 446 LVSPEMEQFALNMTSG 461
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 33.9 bits (76), Expect = 0.19
Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 15 ALPGRCP-PAARAPAPAP---APSEPSSSVHRPG-APGLPLASGPG 55
A P P PAA APAPAP A S+P S+ P APG L + PG
Sbjct: 312 AAPSAAPAPAAPAPAPAPQSAASSQPQSASTPPALAPGSLLGAAPG 357
Score = 29.3 bits (64), Expect = 4.7
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 11/45 (24%)
Query: 22 PAARAPAPAPAPSEPSSSVHRPGAPGLPLASGPGRRRFPQALIVG 66
PAA AP PAPS+ PG LPL++G P A I G
Sbjct: 244 PAAAPSAPGPAPSQ------LPGLAALPLSAGA-----PAAAIAG 277
>gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 2240
Score = 33.5 bits (75), Expect = 0.25
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 19 RCPPAARAPAPAPAPSEPSSSVHRPGAP 46
R P AA APAP P PS+P RPG P
Sbjct: 254 RLPAAASAPAPVPRPSQP----RRPGTP 277
>gi|169167904 PREDICTED: similar to hCG17429 [Homo sapiens]
Length = 353
Score = 33.5 bits (75), Expect = 0.25
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 19 RCPPAARAPAPA--PAPSEPSSSVHRPGAPGLPLASGPGRRR 58
RCPP + APA P S PSS P P L P RRR
Sbjct: 7 RCPPKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRR 48
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.141 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,456,152
Number of Sequences: 37866
Number of extensions: 795235
Number of successful extensions: 11082
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 243
Number of HSP's that attempted gapping in prelim test: 9579
Number of HSP's gapped (non-prelim): 1606
length of query: 311
length of database: 18,247,518
effective HSP length: 102
effective length of query: 209
effective length of database: 14,385,186
effective search space: 3006503874
effective search space used: 3006503874
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.