Guide to the Human Genome
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Name: LOC441086 Sequence: fasta or formatted (296aa) NCBI GI: 239754052
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {296aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         34           2
 C cysteine            2.7          8           1
 D aspartate           2.7          8           2
 E glutamate           4.7         14           1
 F phenylalanine       0.7          2           1
 G glycine            11.1         33           3
 H histidine           3.4         10           1
 I isoleucine          1.4          4           1
 K lysine              1.7          5           1
 L leucine             9.1         27           2
 M methionine          0.7          2           1
 N asparagine          2.0          6           1
 P proline             9.8         29           2
 Q glutamine           2.7          8           1
 R arginine           15.5         46           3
 S serine              8.4         25           1
 T threonine           4.7         14           1
 V valine              3.7         11           2
 W tryptophan          1.7          5           2
 Y tyrosine            1.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC441086             0.986   PREDICTED: hypothetical protein 
SRRM2                 0.052   splicing coactivator subunit SRm300 
LOC100129129          0.032   PREDICTED: hypothetical protein 
LOC643355             0.030   PREDICTED: hypothetical protein 
LOC643355             0.030   PREDICTED: hypothetical protein 
FLJ37078              0.030   hypothetical protein LOC222183 
LOC389333             0.029   hypothetical protein LOC389333 
PRPF4B                0.029   serine/threonine-protein kinase PRP4K 
FXR2                  0.029   fragile X mental retardation syndrome related protein...
SYN1                  0.027   synapsin I isoform Ia 
SYN1                  0.027   synapsin I isoform Ib 
LOC100292133          0.027   PREDICTED: hypothetical protein 
LOC100294354          0.027   PREDICTED: hypothetical protein 
LOC100292612          0.025   PREDICTED: hypothetical protein 
COL7A1                0.025   alpha 1 type VII collagen precursor 
ZBED3                 0.025   zinc finger, BED-type containing 3 
LOC100292370          0.025   PREDICTED: hypothetical protein 
LOC729570             0.025   PREDICTED: hypothetical protein 
LOC643355             0.025   PREDICTED: hypothetical protein 
LOC729570             0.025   PREDICTED: hypothetical protein 
LOC729570             0.025   PREDICTED: hypothetical protein 
LOC100292035          0.024   PREDICTED: hypothetical protein XP_002345623 
LOC100131251          0.024   PREDICTED: hypothetical protein 
LOC100131251          0.024   PREDICTED: hypothetical protein 
BBC3                  0.024   BCL2 binding component 3 isoform 1 
SORCS2                0.024   VPS10 domain receptor protein SORCS 2 
LOC100293702          0.024   PREDICTED: hypothetical protein 
LOC100287504          0.024   PREDICTED: hypothetical protein 
LOC100287504          0.024   PREDICTED: hypothetical protein XP_002343166 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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