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Search of human proteins with 116008456
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116008456 DMRT-like family C1 [Homo sapiens]
(192 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|145046253 DMRT-like family C1B [Homo sapiens] 388 e-108
gi|116008456 DMRT-like family C1 [Homo sapiens] 388 e-108
gi|94536830 DMRT-like family C2 [Homo sapiens] 129 2e-30
gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [... 39 0.003
gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1 [... 39 0.003
gi|148612879 polyhomeotic like 3 [Homo sapiens] 39 0.003
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap... 39 0.003
gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sap... 39 0.003
gi|7706501 WW domain binding protein 11 [Homo sapiens] 38 0.005
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 38 0.006
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 38 0.006
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 38 0.006
gi|153251840 zinc finger protein 839 [Homo sapiens] 37 0.010
gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens] 36 0.023
gi|125625322 RALBP1 associated Eps domain containing 2 isoform 2... 35 0.030
gi|125625326 RALBP1 associated Eps domain containing 2 isoform 1... 35 0.030
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.039
gi|15147337 ubiquitin protein ligase E3 component n-recognin 5 [... 34 0.067
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens] 34 0.067
gi|26051278 nuclear pore membrane protein 121 [Homo sapiens] 34 0.087
gi|52630419 sterol regulatory element binding transcription fact... 33 0.11
gi|22547195 sterol regulatory element binding transcription fact... 33 0.11
gi|239743232 PREDICTED: hypothetical protein XP_002342775 [Homo ... 33 0.11
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 33 0.11
gi|241982780 programmed cell death 6 interacting protein isoform... 33 0.15
gi|22027538 programmed cell death 6 interacting protein isoform ... 33 0.15
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 33 0.15
gi|55749531 splicing factor 3B subunit 2 [Homo sapiens] 33 0.15
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 33 0.19
gi|154689780 son of sevenless homolog 2 [Homo sapiens] 32 0.25
>gi|145046253 DMRT-like family C1B [Homo sapiens]
Length = 192
Score = 388 bits (997), Expect = e-108
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP 60
MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP
Sbjct: 1 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP 60
Query: 61 CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS 120
CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS
Sbjct: 61 CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS 120
Query: 121 EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL 180
EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL
Sbjct: 121 EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL 180
Query: 181 PIGHLGCISLLS 192
PIGHLGCISLLS
Sbjct: 181 PIGHLGCISLLS 192
>gi|116008456 DMRT-like family C1 [Homo sapiens]
Length = 192
Score = 388 bits (997), Expect = e-108
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP 60
MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP
Sbjct: 1 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP 60
Query: 61 CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS 120
CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS
Sbjct: 61 CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS 120
Query: 121 EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL 180
EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL
Sbjct: 121 EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL 180
Query: 181 PIGHLGCISLLS 192
PIGHLGCISLLS
Sbjct: 181 PIGHLGCISLLS 192
>gi|94536830 DMRT-like family C2 [Homo sapiens]
Length = 367
Score = 129 bits (324), Expect = 2e-30
Identities = 72/128 (56%), Positives = 82/128 (64%), Gaps = 9/128 (7%)
Query: 74 SGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHSEWQRKLEAAEALL 133
SG+P P+ P STLILQPC T DPL LQPQ S A S SEWQ + EAAEAL+
Sbjct: 240 SGEPQGPPSQPRTHSTLILQPCGTPDPLQLQPQASGASCLARTSGPSEWQLQQEAAEALV 299
Query: 134 TLRNSAQAP---------PDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISLPIGH 184
L++S+QAP P ISL PC PPAPAG +GFQP P LRP PA S++L IG
Sbjct: 300 GLKDSSQAPRVTPSVPPNPAWISLLHPCGPPAPAGGRGFQPVGPCLRPSPAPSVALHIGR 359
Query: 185 LGCISLLS 192
LG ISLLS
Sbjct: 360 LGSISLLS 367
>gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3
[Homo sapiens]
Length = 650
Score = 38.9 bits (89), Expect = 0.003
Identities = 46/165 (27%), Positives = 59/165 (35%), Gaps = 41/165 (24%)
Query: 29 LQPETHIFTAPEEGSSQGALL-------LGQAPEPLSLPCTPVTLEQQLVSP---SGDPH 78
L PE F A SS G L +G A + +S P + VSP S +
Sbjct: 278 LDPEEPTFPALSSSSSTGNLAANLTHLGIGGAGQGMSTPGSSPQHRPAGVSPLSLSTEAR 337
Query: 79 RAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHSEWQRKLEAAEALLTLRNS 138
R A P++ + +D L L+ Q+P A T S
Sbjct: 338 RQQASPTLSPLSPITQAVAMDALSLEQQLPY---------------------AFFTQAGS 376
Query: 139 AQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISLPIG 183
Q PP QP PP PA QPP P P P + + LP G
Sbjct: 377 QQPPPQP----QPPPPPPPASQ---QPPPP---PPPQAPVRLPPG 411
>gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1
[Homo sapiens]
Length = 634
Score = 38.9 bits (89), Expect = 0.003
Identities = 46/165 (27%), Positives = 59/165 (35%), Gaps = 41/165 (24%)
Query: 29 LQPETHIFTAPEEGSSQGALL-------LGQAPEPLSLPCTPVTLEQQLVSP---SGDPH 78
L PE F A SS G L +G A + +S P + VSP S +
Sbjct: 262 LDPEEPTFPALSSSSSTGNLAANLTHLGIGGAGQGMSTPGSSPQHRPAGVSPLSLSTEAR 321
Query: 79 RAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHSEWQRKLEAAEALLTLRNS 138
R A P++ + +D L L+ Q+P A T S
Sbjct: 322 RQQASPTLSPLSPITQAVAMDALSLEQQLPY---------------------AFFTQAGS 360
Query: 139 AQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISLPIG 183
Q PP QP PP PA QPP P P P + + LP G
Sbjct: 361 QQPPPQP----QPPPPPPPASQ---QPPPP---PPPQAPVRLPPG 395
>gi|148612879 polyhomeotic like 3 [Homo sapiens]
Length = 995
Score = 38.9 bits (89), Expect = 0.003
Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 30/181 (16%)
Query: 4 PPKAPIRVRNLTIRAGALTGKE---NNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP 60
PP +P + + I AL ++ LQP ++ + A L P L LP
Sbjct: 414 PPHSPSQSPTIIIHPQALIQPHPLVSSALQPGPNLQQSTANQVQATAQL--NLPSHLPLP 471
Query: 61 CTPV------------TLEQQLVSPS--------GDPHRAPALPSICSTLILQ----PCA 96
+PV + QQ+VSPS P + P + ++ Q P
Sbjct: 472 ASPVVHIGPVQQSALVSPGQQIVSPSHQQYSSLQSSPIPIASPPQMSTSPPAQIPPLPLQ 531
Query: 97 TLDPLLLQPQVPKVSDQALVSAHSEWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPA 156
++ L +QP++ Q LV + +L AAEAL+ L PP +++++ PPA
Sbjct: 532 SMQSLQVQPEILS-QGQVLVQNALVSEEELPAAEALVQLPFQTLPPPQTVAVNLQVQPPA 590
Query: 157 P 157
P
Sbjct: 591 P 591
Score = 33.1 bits (74), Expect = 0.15
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 32/160 (20%)
Query: 4 PPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAP--EPLSLPC 61
PPK+ + ++LTI T + + Q + +PE G++P E S
Sbjct: 245 PPKSTSQTQSLTICHNKTTVTSSKISQRDP----SPESNKK------GESPSLESRSTAV 294
Query: 62 TPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHSE 121
T + QL++P+ S +QP + L+ Q+P S + VS H
Sbjct: 295 TRTSSIHQLIAPA-------------SYSPIQPHS----LIKHQQIPLHSPPSKVSHHQL 337
Query: 122 WQRKLEAAEALLTLRNSAQAPPDS---ISLHQPCNPPAPA 158
++ + +TL+NS Q PP S I L PPAP+
Sbjct: 338 ILQQQQQQIQPITLQNSTQDPPPSQHCIPLQNHGLPPAPS 377
Score = 27.7 bits (60), Expect = 6.3
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 38 APEEGSSQGALLLGQAPEPLSLPCTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCAT 97
AP SQ + P PL++ QQ V S P P PS T+I+ P A
Sbjct: 375 APSNAQSQHCSPIQSHPSPLTVSPNQSQSAQQSVVVSPPP---PHSPSQSPTIIIHPQAL 431
Query: 98 LDP 100
+ P
Sbjct: 432 IQP 434
>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sapiens]
Length = 2603
Score = 38.9 bits (89), Expect = 0.003
Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 28/168 (16%)
Query: 25 ENNMLQPETHIFTAPE------EGSSQGALLLGQAPEPLSLPCT---PVTLE-QQLVSPS 74
E ++P H TAP + SS L + P S+P + P TL Q S
Sbjct: 2174 ETPAIRPPPHGTTAPHKNSASVQNSSVAVLSVNHIKRPHSVPSSVQLPSTLSTQSACQNS 2233
Query: 75 GDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHSEWQRKLEAAEAL-- 132
P P P+ + L P +TL + + SAH+ W + ++++
Sbjct: 2234 VHPANKPIAPNFSAPLPFGPFSTL------------FENSPTSAHAFWGGSVVSSQSTPE 2281
Query: 133 LTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL 180
L + P+S LHQ AP GF+PP P P+ +++
Sbjct: 2282 SMLSGKSSYLPNSDPLHQSDTSKAP----GFRPPLQRPAPSPSGIVNM 2325
>gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sapiens]
Length = 2352
Score = 38.9 bits (89), Expect = 0.003
Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 28/168 (16%)
Query: 25 ENNMLQPETHIFTAPE------EGSSQGALLLGQAPEPLSLPCT---PVTLE-QQLVSPS 74
E ++P H TAP + SS L + P S+P + P TL Q S
Sbjct: 1923 ETPAIRPPPHGTTAPHKNSASVQNSSVAVLSVNHIKRPHSVPSSVQLPSTLSTQSACQNS 1982
Query: 75 GDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHSEWQRKLEAAEAL-- 132
P P P+ + L P +TL + + SAH+ W + ++++
Sbjct: 1983 VHPANKPIAPNFSAPLPFGPFSTL------------FENSPTSAHAFWGGSVVSSQSTPE 2030
Query: 133 LTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL 180
L + P+S LHQ AP GF+PP P P+ +++
Sbjct: 2031 SMLSGKSSYLPNSDPLHQSDTSKAP----GFRPPLQRPAPSPSGIVNM 2074
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 38.1 bits (87), Expect = 0.005
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 111 SDQALVSAHSEWQRKLEA-AEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPS 169
SD + S+ Q K E+ ++ T + QAPP S+ Q PP P PP+P
Sbjct: 361 SDDSEAEKQSQKQHKEESHSDGTSTASSQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAPP 420
Query: 170 LRPRPASSISLPIG 183
LRP P LP G
Sbjct: 421 LRP-PGPPTGLPPG 433
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 37.7 bits (86), Expect = 0.006
Identities = 40/154 (25%), Positives = 58/154 (37%), Gaps = 14/154 (9%)
Query: 31 PETHIFTAPEEGSSQGALLLGQAPEPLSLPCTPVTLEQQLVSPSGDPHRAPALPSICSTL 90
P T T P SS PE + P TP Q S S P A P+ +T
Sbjct: 169 PPTPSATTPAPPSSSAP------PETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATT 222
Query: 91 ILQPCATLDP-LLLQPQVPKVSDQALVSAHS--EWQRKLEAAEALLTLRNSAQAPPDSIS 147
P ++ P P P + A +S+ + E A +SA APP++ +
Sbjct: 223 PAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTA 282
Query: 148 LHQPCNPPAPAGDKGFQPPSPSLRPRPASSISLP 181
PP P+ P SP+ + A+ I+ P
Sbjct: 283 A-----PPTPSATTPAPPSSPAPQETTAAPITTP 311
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 37.7 bits (86), Expect = 0.006
Identities = 40/154 (25%), Positives = 58/154 (37%), Gaps = 14/154 (9%)
Query: 31 PETHIFTAPEEGSSQGALLLGQAPEPLSLPCTPVTLEQQLVSPSGDPHRAPALPSICSTL 90
P T T P SS PE + P TP Q S S P A P+ +T
Sbjct: 169 PPTPSATTPAPPSSSAP------PETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATT 222
Query: 91 ILQPCATLDP-LLLQPQVPKVSDQALVSAHS--EWQRKLEAAEALLTLRNSAQAPPDSIS 147
P ++ P P P + A +S+ + E A +SA APP++ +
Sbjct: 223 PAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTA 282
Query: 148 LHQPCNPPAPAGDKGFQPPSPSLRPRPASSISLP 181
PP P+ P SP+ + A+ I+ P
Sbjct: 283 A-----PPTPSATTPAPPSSPAPQETTAAPITTP 311
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 37.7 bits (86), Expect = 0.006
Identities = 40/154 (25%), Positives = 58/154 (37%), Gaps = 14/154 (9%)
Query: 31 PETHIFTAPEEGSSQGALLLGQAPEPLSLPCTPVTLEQQLVSPSGDPHRAPALPSICSTL 90
P T T P SS PE + P TP Q S S P A P+ +T
Sbjct: 169 PPTPSATTPAPPSSSAP------PETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATT 222
Query: 91 ILQPCATLDP-LLLQPQVPKVSDQALVSAHS--EWQRKLEAAEALLTLRNSAQAPPDSIS 147
P ++ P P P + A +S+ + E A +SA APP++ +
Sbjct: 223 PAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTA 282
Query: 148 LHQPCNPPAPAGDKGFQPPSPSLRPRPASSISLP 181
PP P+ P SP+ + A+ I+ P
Sbjct: 283 A-----PPTPSATTPAPPSSPAPQETTAAPITTP 311
>gi|153251840 zinc finger protein 839 [Homo sapiens]
Length = 927
Score = 37.0 bits (84), Expect = 0.010
Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 21/144 (14%)
Query: 41 EGSSQGALLLGQAPEPLSLP--CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATL 98
+ + Q AL G+ EP LP P LE V + + P + T I A
Sbjct: 71 DAAQQAALQRGRGTEPPRLPRLLPPQQLEAICVKVTSGETKGQERPMLLPTTIQPQTAR- 129
Query: 99 DPLLLQPQVPKVSDQALVSAHSEWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPA 158
+ Q+P+ + LV H A+ LL ++ + P S L C PPA
Sbjct: 130 -----KSQLPR-GNSCLVGLHI-------ASPQLLRVQPLVRTEPQSCFLSDLCQPPA-- 174
Query: 159 GDKGF-QPPSPSLRPRPASSISLP 181
+GF Q P P+L+ PA + P
Sbjct: 175 --QGFVQRPLPALQVVPAKRVPAP 196
>gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]
Length = 481
Score = 35.8 bits (81), Expect = 0.023
Identities = 36/112 (32%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Query: 68 QQLVSPSGDPHRAPALPSIC---STLILQPCATLDPLLLQPQVPKVSDQALVSAHSEWQR 124
QQ+ G H AP C +T ILQ A L L Q P + A V+A +
Sbjct: 224 QQMAGHLGAFHPAPLPLGACGAYTTAILQHQAAL---LAAAQGPGLGPVAAVAAQMQHVA 280
Query: 125 KLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPAS 176
A L +A +PP S P PAP G GF P +P +P S
Sbjct: 281 AFSLVAAPLLPAAAANSPPGSGPGTLP-GLPAPIGVNGFGPLTPQTNGQPGS 331
>gi|125625322 RALBP1 associated Eps domain containing 2 isoform 2
[Homo sapiens]
Length = 659
Score = 35.4 bits (80), Expect = 0.030
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 105 PQVPKVSDQALVSAHSEWQRKLEAAEALLTLRNSAQAPP---------DSISLHQPCNPP 155
P PK S+ S EA+ + PP S+ L++ P
Sbjct: 443 PATPKDSNSLKARPRSRSYSSTSIEEAMKRGEDPPTPPPRPQKTHSRASSLDLNKVFQPS 502
Query: 156 APAGDKGFQPPSPSLRPRPASSISLPIGHLGCISLLS 192
PA G PP P+L PRP S S + + LS
Sbjct: 503 VPATKSGLLPPPPALPPRPCPSQSEQVSEAELLPQLS 539
>gi|125625326 RALBP1 associated Eps domain containing 2 isoform 1
[Homo sapiens]
Length = 660
Score = 35.4 bits (80), Expect = 0.030
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 105 PQVPKVSDQALVSAHSEWQRKLEAAEALLTLRNSAQAPP---------DSISLHQPCNPP 155
P PK S+ S EA+ + PP S+ L++ P
Sbjct: 444 PATPKDSNSLKARPRSRSYSSTSIEEAMKRGEDPPTPPPRPQKTHSRASSLDLNKVFQPS 503
Query: 156 APAGDKGFQPPSPSLRPRPASSISLPIGHLGCISLLS 192
PA G PP P+L PRP S S + + LS
Sbjct: 504 VPATKSGLLPPPPALPPRPCPSQSEQVSEAELLPQLS 540
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 35.0 bits (79), Expect = 0.039
Identities = 59/206 (28%), Positives = 77/206 (37%), Gaps = 40/206 (19%)
Query: 1 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPE----- 55
+ APP +P+ + +L A T + LQ TH F +Q +L P
Sbjct: 400 LQAPP-SPLALSSLQ----ATTSLGSPTLQA-THSFLTMSPRQTQASLTSPSRPASTPPD 453
Query: 56 ------PLSLPCTPV--TLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQV 107
PLSLP +P T VSP P L ++ S P A L L++ P
Sbjct: 454 SPPLQAPLSLPASPPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQAPLSSLIMPP-- 511
Query: 108 PKVSDQALVSAHSEWQRKLEAAEALLT---LRN-SAQAPPDSISLHQPCN------PPAP 157
L + S L+ A LT L N + APP + P PP P
Sbjct: 512 -------LETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCP 564
Query: 158 AGDKGFQPPSPSLRPRP--ASSISLP 181
A PPSP P P SSI+ P
Sbjct: 565 APCPLQAPPSPLTTPPPETPSSIATP 590
Score = 29.3 bits (64), Expect = 2.2
Identities = 38/140 (27%), Positives = 49/140 (35%), Gaps = 40/140 (28%)
Query: 54 PEPLSLPCTPVTLEQQLVSPSGD-PHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSD 112
P P + P Q L SP P +AP PS ++L + P AT P Q P V
Sbjct: 784 PPPQAPPALATPPLQALPSPPASFPGQAPFSPS--ASLPMSPLATPPP-----QAPPVLA 836
Query: 113 QALVSAHSEWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQ-------- 164
L+ +PP S +L P PP P D
Sbjct: 837 APLLQV--------------------PPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLAL 876
Query: 165 ---PPSPSLRPRPASSISLP 181
PP P R P+S++S P
Sbjct: 877 APGPPPPPSR-SPSSTLSGP 895
>gi|15147337 ubiquitin protein ligase E3 component n-recognin 5 [Homo
sapiens]
Length = 2799
Score = 34.3 bits (77), Expect = 0.067
Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 24/170 (14%)
Query: 40 EEGSSQGALLLGQAPEPLSLPCTPVTL--------EQQLVSPSGDPHRA--PALPSICST 89
EEG Q L+ P +++P TP + E +++ + P A L +
Sbjct: 2609 EEGGGQVELI----PNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPK 2664
Query: 90 LILQPCATLDPLLLQPQVPKVSDQALVSAHSEWQRKLEAAEALLTLRNSAQAPPDSISLH 149
L+ D LL +V+ Q L+S S E AE LL + + + +S+
Sbjct: 2665 NSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMT 2724
Query: 150 Q--------PCNPPAPAGDKGFQPPSPSLRPRPASSISLPIGHLGCISLL 191
+ +P PA ++GFQ P PS+ RP LP + CIS L
Sbjct: 2725 ERQDLVYFWTSSPSLPASEEGFQ-PMPSITIRPPDDQHLPTANT-CISRL 2772
>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
Length = 987
Score = 34.3 bits (77), Expect = 0.067
Identities = 43/144 (29%), Positives = 60/144 (41%), Gaps = 22/144 (15%)
Query: 55 EPLSLPCTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQ-VPKVSDQ 113
E LS P TP L +S SG P P+ PS S +P TL L+ P VP +
Sbjct: 358 EALSPPKTPSLLPPLGLSQSGPPGLLPS-PSFDS----KPPTTLLGLIPAPSMVPATDTK 412
Query: 114 ALVSAHSEWQRKLEAAEA---------LLTLRNSAQAPP------DSISLHQPCNPPAPA 158
A + +E K +A A L +N++ + P + + +P P
Sbjct: 413 APPTLQAETATKPQATSAPSPAPKQSFLFGTQNTSPSSPAAPAASSASPMFKPIFTAPPK 472
Query: 159 GDK-GFQPPSPSLRPRPASSISLP 181
+K G PP PS+ SS SLP
Sbjct: 473 SEKEGPTPPGPSVTATAPSSSSLP 496
>gi|26051278 nuclear pore membrane protein 121 [Homo sapiens]
Length = 984
Score = 33.9 bits (76), Expect = 0.087
Identities = 43/144 (29%), Positives = 61/144 (42%), Gaps = 22/144 (15%)
Query: 55 EPLSLPCTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQ-VPKVSDQ 113
E LS P TP L +S SG P P+ PS S +P TL L+ P VP +
Sbjct: 358 EALSPPKTPSLLPPLGLSQSGPPGLLPS-PSFDS----KPPTTLLGLIPAPSMVPATDTK 412
Query: 114 ALVSAHSEWQRKLEAAEA---------LLTLRNSAQAPPDSIS------LHQPCNPPAPA 158
A + +E K +A A L +N++ + P + + + +P P
Sbjct: 413 APPTLQAETATKPQATSAPSPAPKQSFLFGTQNTSPSSPAAPAASSAPPMFKPIFTAPPK 472
Query: 159 GDK-GFQPPSPSLRPRPASSISLP 181
+K G PP PS+ SS SLP
Sbjct: 473 SEKEGPTPPGPSVTATAPSSSSLP 496
>gi|52630419 sterol regulatory element binding transcription factor
1 isoform a [Homo sapiens]
Length = 1177
Score = 33.5 bits (75), Expect = 0.11
Identities = 45/166 (27%), Positives = 56/166 (33%), Gaps = 15/166 (9%)
Query: 26 NNMLQPETHIFTAPEEGSSQGAL--LLGQAPEPLSLPCTPVTLEQQLVSPSGDPHRAPAL 83
NN +F P GS G P SL P TL L + P AP+
Sbjct: 67 NNQDSDFPGLFDPPYAGSGAGGTDPASPDTSSPGSLSPPPATLSSSLEAFLSGPQAAPSP 126
Query: 84 PSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHSEWQRKLEAAE------ALLTLRN 137
S QP T PL + P +P S + S L+ ALL
Sbjct: 127 LSPP-----QPAPT--PLKMYPSMPAFSPGPGIKEESVPLSILQTPTPQPLPGALLPQSF 179
Query: 138 SAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISLPIG 183
A APP S P P G PP + +P P ++ P G
Sbjct: 180 PAPAPPQFSSTPVLGYPSPPGGFSTGSPPGNTQQPLPGLPLASPPG 225
>gi|22547195 sterol regulatory element binding transcription factor
1 isoform b [Homo sapiens]
Length = 1147
Score = 33.5 bits (75), Expect = 0.11
Identities = 45/166 (27%), Positives = 56/166 (33%), Gaps = 15/166 (9%)
Query: 26 NNMLQPETHIFTAPEEGSSQGAL--LLGQAPEPLSLPCTPVTLEQQLVSPSGDPHRAPAL 83
NN +F P GS G P SL P TL L + P AP+
Sbjct: 37 NNQDSDFPGLFDPPYAGSGAGGTDPASPDTSSPGSLSPPPATLSSSLEAFLSGPQAAPSP 96
Query: 84 PSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHSEWQRKLEAAE------ALLTLRN 137
S QP T PL + P +P S + S L+ ALL
Sbjct: 97 LSPP-----QPAPT--PLKMYPSMPAFSPGPGIKEESVPLSILQTPTPQPLPGALLPQSF 149
Query: 138 SAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISLPIG 183
A APP S P P G PP + +P P ++ P G
Sbjct: 150 PAPAPPQFSSTPVLGYPSPPGGFSTGSPPGNTQQPLPGLPLASPPG 195
>gi|239743232 PREDICTED: hypothetical protein XP_002342775 [Homo
sapiens]
Length = 834
Score = 33.5 bits (75), Expect = 0.11
Identities = 43/144 (29%), Positives = 59/144 (40%), Gaps = 22/144 (15%)
Query: 55 EPLSLPCTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQ-VPKVSDQ 113
E LS P TP L +S SG P P+ PS S P TL L+ P VP +
Sbjct: 207 EALSPPKTPNLLPPLGLSQSGPPGLLPS-PSFDSN----PPTTLLGLIPAPSMVPATDTK 261
Query: 114 ALVSAHSEWQRKLEAAEA---------LLTLRNSAQAPP------DSISLHQPCNPPAPA 158
A + +E K +A A L +N++ + P + + +P P
Sbjct: 262 APPTLQAETTTKPQATSAPSPAPKQSFLFGTQNTSPSSPAAPAASSASPMFKPIFTAPPK 321
Query: 159 GDK-GFQPPSPSLRPRPASSISLP 181
+K G PP PS+ SS SLP
Sbjct: 322 SEKEGPTPPGPSVSATAPSSSSLP 345
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 33.5 bits (75), Expect = 0.11
Identities = 35/121 (28%), Positives = 43/121 (35%), Gaps = 19/121 (15%)
Query: 54 PEPLSLPCTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPL--LLQPQVPKVS 111
P PL PC L+ + SP+ D PA P L P A+ P L P +P V+
Sbjct: 263 PLPLLPPCGYPGLKAEPASPAQDAQEPPAPPPP-----LPPYASCSPRASLPAPPLPGVN 317
Query: 112 DQALVSAHSEWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLR 171
+ E L S QAPP PPAP G + F R
Sbjct: 318 SSS------------ETPPPLPPKSPSFQAPPQKAGAQALPAPPAPPGSQPFLQKKRHGR 365
Query: 172 P 172
P
Sbjct: 366 P 366
>gi|241982780 programmed cell death 6 interacting protein isoform 2
[Homo sapiens]
Length = 873
Score = 33.1 bits (74), Expect = 0.15
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 124 RKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISLP 181
RK E E L L+ S P + S+ P +PAG PP+P+ R P + P
Sbjct: 703 RKTERDELLKDLQQSIAREPSAPSIPTPAYQSSPAGGHAPTPPTPAPRTMPPTKPQPP 760
>gi|22027538 programmed cell death 6 interacting protein isoform 1
[Homo sapiens]
Length = 868
Score = 33.1 bits (74), Expect = 0.15
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 124 RKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISLP 181
RK E E L L+ S P + S+ P +PAG PP+P+ R P + P
Sbjct: 698 RKTERDELLKDLQQSIAREPSAPSIPTPAYQSSPAGGHAPTPPTPAPRTMPPTKPQPP 755
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 33.1 bits (74), Expect = 0.15
Identities = 35/131 (26%), Positives = 47/131 (35%), Gaps = 19/131 (14%)
Query: 51 GQAPEPLSLPCTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKV 110
GQ P P S P P +QQ P P PS A+ PL Q
Sbjct: 487 GQPPPPPSGPLPPWQQQQQQPPP-------PPPPS-------SSMASSTPLPWQQNTTTT 532
Query: 111 SDQALVSAHSEWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSL 170
+ A + WQ++ +AA A Q P + L PP P G PP P
Sbjct: 533 TTSAGTGSIPPWQQQ-QAAAAASPGAPQMQGNPTMVPLPPGVQPPLPPG----APPPPPP 587
Query: 171 RPRPASSISLP 181
P ++ + +P
Sbjct: 588 PPPGSAGMMIP 598
>gi|55749531 splicing factor 3B subunit 2 [Homo sapiens]
Length = 895
Score = 33.1 bits (74), Expect = 0.15
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 137 NSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISLPIGH 184
+ A PP S L PP P G QPP P P P + P+ H
Sbjct: 76 DKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFPMAH 123
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 32.7 bits (73), Expect = 0.19
Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 26/135 (19%)
Query: 53 APEPLSLPCTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSD 112
AP P + P P+ + L P G P P C T++ AT+ L + P P V+
Sbjct: 845 APLPPASPALPLQAVK-LPHPPGAPLAMP-----CRTIVPNAPATIPLLAVAP--PGVAA 896
Query: 113 QALVSAHSEW--QRKLEAAEALL-----------TLRNSAQAPPDSISLHQPCNPPAPAG 159
++ SA ++ Q AA + T++N PP QP PP P
Sbjct: 897 LSIHSAVAQLPGQPVYPAAFPQMAPTDVPPSPHHTVQNMRATPPQPALPPQPTLPPQPV- 955
Query: 160 DKGFQPPSPSLRPRP 174
PP P+L P+P
Sbjct: 956 ----LPPQPTLPPQP 966
Score = 32.7 bits (73), Expect = 0.19
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 33/135 (24%)
Query: 54 PEPLSLPCTPVTLEQQL---VSPSGDP-------HRAPALPSICS---TLILQPCATLDP 100
P+P +LP P L+ L +P+ P H AP + + T+ + P A L P
Sbjct: 994 PQP-ALPVRPEPLQPHLPEQAAPAATPGSQILLGHPAPYAVDVAAQVPTVPVPPAAVLSP 1052
Query: 101 LL---LQPQVPKVSDQALVSAHSEWQRKLEAAEALLTLRNSAQA-PPDSISLHQPCNPPA 156
L L P P++ Q +L T+ S Q+ P + +L P NPP
Sbjct: 1053 PLPEVLLPAAPELLPQF--------------PSSLATVSASVQSVPTQTATLLPPANPPL 1098
Query: 157 PAGDKGFQPPSPSLR 171
P G G P P+++
Sbjct: 1099 PGG-PGIASPCPTVQ 1112
Score = 29.6 bits (65), Expect = 1.6
Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 8/109 (7%)
Query: 78 HRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHSEWQRKLEAAEALLTLRN 137
H AP P L P ++L P Q P DQ S+ Q A++ LL+
Sbjct: 1321 HPAPEAPESSPPL---PLSSLPPEASQDSAP-YKDQL----SSKEQPSFLASQQLLSQAG 1372
Query: 138 SAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISLPIGHLG 186
+ P + P +PP A + P+ S P PAS + G G
Sbjct: 1373 PSNPPGAPPAPLAPSSPPVTALPQDGAAPATSTMPEPASGTASQAGGPG 1421
>gi|154689780 son of sevenless homolog 2 [Homo sapiens]
Length = 1332
Score = 32.3 bits (72), Expect = 0.25
Identities = 38/135 (28%), Positives = 51/135 (37%), Gaps = 15/135 (11%)
Query: 52 QAPEPLSLPCTPV---TLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVP 108
Q P P P PV + L SP P R P LP + L+P Q P
Sbjct: 1179 QPPPPKVKPRVPVPTGAFDGPLHSPPPPPPRDP-LPDTPPPVPLRPPEHFINCPFNLQPP 1237
Query: 109 KVSDQALVSAHSEWQRKLEAAEALLTLRNSAQAPPDSISLHQP--CNPPAPAGDKGFQPP 166
+ + S+W R + T NS PP + S P C + + + PP
Sbjct: 1238 PLGH---LHRDSDWLRDIS------TCPNSPSTPPSTPSPRVPRRCYVLSSSQNNLAHPP 1288
Query: 167 SPSLRPRPASSISLP 181
+P + PR SS LP
Sbjct: 1289 APPVPPRQNSSPHLP 1303
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,787,609
Number of Sequences: 37866
Number of extensions: 553933
Number of successful extensions: 3024
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 176
Number of HSP's that attempted gapping in prelim test: 2786
Number of HSP's gapped (non-prelim): 421
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.