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Search of human proteins with 115648140
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|115648140 hypothetical protein LOC23732 [Homo sapiens]
(344 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|115648140 hypothetical protein LOC23732 [Homo sapiens] 722 0.0
gi|147900821 stromal cell derived factor receptor 2 homolog [Hom... 72 6e-13
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 44 2e-04
gi|24497554 homeobox A13 [Homo sapiens] 43 5e-04
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 39 0.005
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 39 0.005
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 39 0.005
gi|23510368 homeobox D11 [Homo sapiens] 39 0.007
gi|239741293 PREDICTED: hypothetical protein XP_002342156 [Homo ... 38 0.012
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 38 0.015
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 38 0.015
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 38 0.015
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 37 0.020
gi|89257348 homeo box HB9 [Homo sapiens] 37 0.020
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 37 0.026
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens] 37 0.026
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens] 37 0.026
gi|239743123 PREDICTED: hypothetical protein [Homo sapiens] 37 0.026
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 36 0.044
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 36 0.044
gi|239753043 PREDICTED: hypothetical protein [Homo sapiens] 35 0.075
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 35 0.075
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 35 0.075
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 35 0.075
gi|239756517 PREDICTED: hypothetical protein [Homo sapiens] 35 0.13
gi|61835232 growth differentiation factor 7 preproprotein [Homo ... 35 0.13
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 34 0.17
gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo ... 34 0.17
gi|239756649 PREDICTED: hypothetical protein [Homo sapiens] 34 0.17
gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo ... 34 0.17
>gi|115648140 hypothetical protein LOC23732 [Homo sapiens]
Length = 344
Score = 722 bits (1864), Expect = 0.0
Identities = 344/344 (100%), Positives = 344/344 (100%)
Query: 1 MRRPRQGGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAAWLRDLCARMARPPRQHP 60
MRRPRQGGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAAWLRDLCARMARPPRQHP
Sbjct: 1 MRRPRQGGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAAWLRDLCARMARPPRQHP 60
Query: 61 GVWASLLLLLLTGPAACAASPADDGAGPGGRGPRGRARGDTGADEAVPRHDSSYGTFAGE 120
GVWASLLLLLLTGPAACAASPADDGAGPGGRGPRGRARGDTGADEAVPRHDSSYGTFAGE
Sbjct: 61 GVWASLLLLLLTGPAACAASPADDGAGPGGRGPRGRARGDTGADEAVPRHDSSYGTFAGE 120
Query: 121 FYDLRYLSEEGYPFPTAPPVDPFAKIKVDDCGKTKGCFRYGKPGCNAETCDYFLSYRMIG 180
FYDLRYLSEEGYPFPTAPPVDPFAKIKVDDCGKTKGCFRYGKPGCNAETCDYFLSYRMIG
Sbjct: 121 FYDLRYLSEEGYPFPTAPPVDPFAKIKVDDCGKTKGCFRYGKPGCNAETCDYFLSYRMIG 180
Query: 181 ADVEFELSADTDGWVAVGFSSDKKMGGDDVMACVHDDNGRVRIQHFYNVGQWAKEIQRNP 240
ADVEFELSADTDGWVAVGFSSDKKMGGDDVMACVHDDNGRVRIQHFYNVGQWAKEIQRNP
Sbjct: 181 ADVEFELSADTDGWVAVGFSSDKKMGGDDVMACVHDDNGRVRIQHFYNVGQWAKEIQRNP 240
Query: 241 ARDEEGVFENNRVTCRFKRPVNVPRDETIVDLHLSWYYLFAWGPAIQGSITRHDIDSPPA 300
ARDEEGVFENNRVTCRFKRPVNVPRDETIVDLHLSWYYLFAWGPAIQGSITRHDIDSPPA
Sbjct: 241 ARDEEGVFENNRVTCRFKRPVNVPRDETIVDLHLSWYYLFAWGPAIQGSITRHDIDSPPA 300
Query: 301 SERVVSIYKYEDIFMPSAAYQTFSSPFCLLLIVALTFYLLMGTP 344
SERVVSIYKYEDIFMPSAAYQTFSSPFCLLLIVALTFYLLMGTP
Sbjct: 301 SERVVSIYKYEDIFMPSAAYQTFSSPFCLLLIVALTFYLLMGTP 344
>gi|147900821 stromal cell derived factor receptor 2 homolog [Homo
sapiens]
Length = 626
Score = 72.4 bits (176), Expect = 6e-13
Identities = 52/166 (31%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
Query: 133 PFPTAPPVDPFAK-IKVDDCGKTKGCFRYGKPGCNAE---TCDYFLSYRMIGADVEFELS 188
P PT PPV K DCG K C R C+ E +C FLS+ V E+S
Sbjct: 179 PLPTLPPVSHLTKPFSASDCGNKKFCIR-SPLNCDPEKEASC-VFLSFTRDDQSVMVEMS 236
Query: 189 ADTDGWVAVGFSSDKKMGGDDVMACVHDDNGRVRIQHFYNVGQWAKEI-QRNPARDEEGV 247
+ G+++ S D+ MG DD C+H+D V IQ + G+ + R+ D
Sbjct: 237 GPSKGYLSFALSHDQWMGDDDAYLCIHEDQ-TVYIQPSHLTGRSHPVMDSRDTLEDMAWR 295
Query: 248 FENNRVTCRFKRPVNVPRDETIVDLHLSWYYLFAWGPAIQGSITRH 293
+ + C F+R + +P + DL+ S+Y A G A G I +H
Sbjct: 296 LADGVMQCSFRRNITLPGVKNRFDLNTSYYIFLADGAANDGRIYKH 341
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 43.9 bits (102), Expect = 2e-04
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAAWLRDLCARMARPPRQHPGVWASL 66
G GG GGS A +GG G P+ GAP+ +R+ +R+ +P R HP V
Sbjct: 2301 GSGGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSRSR-----PSRIPQPVRHHPPV---- 2351
Query: 67 LLLLLTGPAACAASPADDGAGPGGRGP 93
L AA + + AD +G GP
Sbjct: 2352 ----LVSSAASSQAEADKMSGTSTPGP 2374
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 42.7 bits (99), Expect = 5e-04
Identities = 44/143 (30%), Positives = 52/143 (36%), Gaps = 28/143 (19%)
Query: 8 GGGAGGSAAARARAGGLGGGSVP---ARARG------APAAARAAWLRDLCAR-MARPPR 57
G A +AAA A A G GGG P A A G A AAA AA + C MA P
Sbjct: 37 GAAAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAP 96
Query: 58 QHPGVW------------ASLLLLLLTGPAACAASPADDGAGPGGRGPRGRARGDTGADE 105
PG ++ AA AA+ A GPG GP G +
Sbjct: 97 LAPGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPC 156
Query: 106 AVPRHDSS------YGTFAGEFY 122
+ SS YG F +Y
Sbjct: 157 SAAAQSSSGPAALPYGYFGSGYY 179
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 39.3 bits (90), Expect = 0.005
Identities = 20/41 (48%), Positives = 20/41 (48%)
Query: 3 RPRQGGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAA 43
RP GGGG GG GG GGG A GA A A AA
Sbjct: 245 RPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAA 285
Score = 36.2 bits (82), Expect = 0.044
Identities = 18/34 (52%), Positives = 19/34 (55%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARGAPAAA 40
GGG GG A AGG G G+V A A A AAA
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAA 292
Score = 35.0 bits (79), Expect = 0.098
Identities = 18/37 (48%), Positives = 19/37 (51%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAA 43
GGGG GG + GG G G A A A AAA AA
Sbjct: 254 GGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAA 290
Score = 33.9 bits (76), Expect = 0.22
Identities = 17/37 (45%), Positives = 17/37 (45%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAA 43
GGGG GG GG GG GA AAA AA
Sbjct: 251 GGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAA 287
Score = 28.5 bits (62), Expect = 9.2
Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 32/146 (21%)
Query: 7 GGGGAGGS---------AAARARAGGLGGGSVPARARGAPAAARAAWLRDLCARMARPPR 57
GG GAGG+ AAA A AGG GGG + G + PR
Sbjct: 269 GGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLS--------------SPR 314
Query: 58 QHPGVWASLLLLLLTGPAACAASPADDGAGPGG-RGPRGRARGDTGADEAVPRHDSSYGT 116
Q G +++ G A + S A G+ GG + G+ + +GA + + +S
Sbjct: 315 QQGGG----MMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSP 370
Query: 117 FAGEFYDLRYLSEEGYPFPTAPPVDP 142
+ S Y P+APP P
Sbjct: 371 MMRSYGG----SYPEYSSPSAPPPPP 392
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 39.3 bits (90), Expect = 0.005
Identities = 20/41 (48%), Positives = 20/41 (48%)
Query: 3 RPRQGGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAA 43
RP GGGG GG GG GGG A GA A A AA
Sbjct: 245 RPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAA 285
Score = 36.2 bits (82), Expect = 0.044
Identities = 18/34 (52%), Positives = 19/34 (55%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARGAPAAA 40
GGG GG A AGG G G+V A A A AAA
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAA 292
Score = 35.0 bits (79), Expect = 0.098
Identities = 18/37 (48%), Positives = 19/37 (51%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAA 43
GGGG GG + GG G G A A A AAA AA
Sbjct: 254 GGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAA 290
Score = 33.9 bits (76), Expect = 0.22
Identities = 17/37 (45%), Positives = 17/37 (45%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAA 43
GGGG GG GG GG GA AAA AA
Sbjct: 251 GGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAA 287
Score = 28.5 bits (62), Expect = 9.2
Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 32/146 (21%)
Query: 7 GGGGAGGS---------AAARARAGGLGGGSVPARARGAPAAARAAWLRDLCARMARPPR 57
GG GAGG+ AAA A AGG GGG + G + PR
Sbjct: 269 GGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLS--------------SPR 314
Query: 58 QHPGVWASLLLLLLTGPAACAASPADDGAGPGG-RGPRGRARGDTGADEAVPRHDSSYGT 116
Q G +++ G A + S A G+ GG + G+ + +GA + + +S
Sbjct: 315 QQGGG----MMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSP 370
Query: 117 FAGEFYDLRYLSEEGYPFPTAPPVDP 142
+ S Y P+APP P
Sbjct: 371 MMRSYGG----SYPEYSSPSAPPPPP 392
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 39.3 bits (90), Expect = 0.005
Identities = 20/41 (48%), Positives = 20/41 (48%)
Query: 3 RPRQGGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAA 43
RP GGGG GG GG GGG A GA A A AA
Sbjct: 245 RPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAA 285
Score = 36.2 bits (82), Expect = 0.044
Identities = 18/34 (52%), Positives = 19/34 (55%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARGAPAAA 40
GGG GG A AGG G G+V A A A AAA
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAA 292
Score = 35.0 bits (79), Expect = 0.098
Identities = 18/37 (48%), Positives = 19/37 (51%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAA 43
GGGG GG + GG G G A A A AAA AA
Sbjct: 254 GGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAA 290
Score = 33.9 bits (76), Expect = 0.22
Identities = 17/37 (45%), Positives = 17/37 (45%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAA 43
GGGG GG GG GG GA AAA AA
Sbjct: 251 GGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAA 287
Score = 28.5 bits (62), Expect = 9.2
Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 32/146 (21%)
Query: 7 GGGGAGGS---------AAARARAGGLGGGSVPARARGAPAAARAAWLRDLCARMARPPR 57
GG GAGG+ AAA A AGG GGG + G + PR
Sbjct: 269 GGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLS--------------SPR 314
Query: 58 QHPGVWASLLLLLLTGPAACAASPADDGAGPGG-RGPRGRARGDTGADEAVPRHDSSYGT 116
Q G +++ G A + S A G+ GG + G+ + +GA + + +S
Sbjct: 315 QQGGG----MMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSP 370
Query: 117 FAGEFYDLRYLSEEGYPFPTAPPVDP 142
+ S Y P+APP P
Sbjct: 371 MMRSYGG----SYPEYSSPSAPPPPP 392
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 38.9 bits (89), Expect = 0.007
Identities = 53/183 (28%), Positives = 65/183 (35%), Gaps = 47/183 (25%)
Query: 4 PRQGGGGAGGSAAARARAGGLGGG------------SVPARARGAPAAARAAWLRDLCAR 51
P +GGGG GGSA + GG GGG + A A A AA AA R+L
Sbjct: 74 PYRGGGG-GGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPP 132
Query: 52 MARPPRQHPGVWASLLLLLLTGPAACAASPADDGAGPGGRGPRGRARGDTGADEAVPRHD 111
R P +L P A+P GP P G A + AV R+
Sbjct: 133 AGRRPD-----------VLFKAPEPVCAAP-----GP----PHGPAGAASNFYSAVGRNG 172
Query: 112 SSYGTFAGEFYDLRYLSEEGYPF----PTAPPVDPFAKIKVDDCGKTKGCFRYGKPGCNA 167
+ +D Y + G PF P PP P + D KG R G G
Sbjct: 173 -----ILPQGFDQFYEAAPGPPFAGPQPPPPPAPPQPEGAAD-----KGDPRTGAGGGGG 222
Query: 168 ETC 170
C
Sbjct: 223 SPC 225
>gi|239741293 PREDICTED: hypothetical protein XP_002342156 [Homo
sapiens]
Length = 383
Score = 38.1 bits (87), Expect = 0.012
Identities = 35/89 (39%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 18 RARAGG-LGGGSVPARARGAPAAARAAWLRDLCARMARPPRQHPGVWASLLLLLLTGPAA 76
RAR GG +GGG AR AP A L +LC PP PG A+ L L P A
Sbjct: 52 RARPGGVVGGGPGGGPARAAP-AMNGLSLSELCCLFCCPP--CPGRIAAKLAFL--PPEA 106
Query: 77 CAASPADDGAGPGGRG--PRGRARGDTGA 103
+ + GPGG G P G R +GA
Sbjct: 107 TYSLVPEPELGPGGAGAAPLGTLRASSGA 135
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 37.7 bits (86), Expect = 0.015
Identities = 46/149 (30%), Positives = 59/149 (39%), Gaps = 18/149 (12%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARG------APAAARAAWLRDL-----CARMARP 55
GGGGAGG A G G A A+G P ++ ++ L C +
Sbjct: 348 GGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPH 407
Query: 56 PRQHPGVWASLLLLLLTGPAACAASPADDGAGPGGRGPRGRARGDTGADEAVPRHDSSYG 115
P P A+ L A AA+ A GAG GG G +A G +G R D+ Y
Sbjct: 408 PYTFPAAAAAFSLCHKKEDAG-AAAEALGGAGAGGAGAAPKA-GLSGLFWPAGRKDAFYP 465
Query: 116 TFAGEFYDLRYLSEEGYPFPT--APPVDP 142
F F+ R + G P PT PP P
Sbjct: 466 PFC-MFWPPR--TPGGLPVPTYLQPPPQP 491
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 37.7 bits (86), Expect = 0.015
Identities = 46/149 (30%), Positives = 59/149 (39%), Gaps = 18/149 (12%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARG------APAAARAAWLRDL-----CARMARP 55
GGGGAGG A G G A A+G P ++ ++ L C +
Sbjct: 348 GGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPH 407
Query: 56 PRQHPGVWASLLLLLLTGPAACAASPADDGAGPGGRGPRGRARGDTGADEAVPRHDSSYG 115
P P A+ L A AA+ A GAG GG G +A G +G R D+ Y
Sbjct: 408 PYTFPAAAAAFSLCHKKEDAG-AAAEALGGAGAGGAGAAPKA-GLSGLFWPAGRKDAFYP 465
Query: 116 TFAGEFYDLRYLSEEGYPFPT--APPVDP 142
F F+ R + G P PT PP P
Sbjct: 466 PFC-MFWPPR--TPGGLPVPTYLQPPPQP 491
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 37.7 bits (86), Expect = 0.015
Identities = 46/149 (30%), Positives = 59/149 (39%), Gaps = 18/149 (12%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARG------APAAARAAWLRDL-----CARMARP 55
GGGGAGG A G G A A+G P ++ ++ L C +
Sbjct: 348 GGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSFGGVLQKFPGCGGLFPH 407
Query: 56 PRQHPGVWASLLLLLLTGPAACAASPADDGAGPGGRGPRGRARGDTGADEAVPRHDSSYG 115
P P A+ L A AA+ A GAG GG G +A G +G R D+ Y
Sbjct: 408 PYTFPAAAAAFSLCHKKEDAG-AAAEALGGAGAGGAGAAPKA-GLSGLFWPAGRKDAFYP 465
Query: 116 TFAGEFYDLRYLSEEGYPFPT--APPVDP 142
F F+ R + G P PT PP P
Sbjct: 466 PFC-MFWPPR--TPGGLPVPTYLQPPPQP 491
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 37.4 bits (85), Expect = 0.020
Identities = 35/107 (32%), Positives = 40/107 (37%), Gaps = 12/107 (11%)
Query: 5 RQGGGGAGGSAAARARAGGLGGGSVPARARGAPA---------AARAAWLRDLCARMARP 55
R G G A R RA P ARG+PA AA +A R + AR P
Sbjct: 97 RAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPP 156
Query: 56 PRQHPGVWASLLLLLLTGPAACAASPADD---GAGPGGRGPRGRARG 99
P + A L G AA SP+ A PG PR A G
Sbjct: 157 PCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG 203
Score = 29.3 bits (64), Expect = 5.4
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 57 RQHPGVWASLLLLLLT---GPAACAASPADDGAGPGGRGPRGRARGDTGADEAVPRHDSS 113
++HPG L + GP A A+ A AGP G R RG A P ++
Sbjct: 66 QEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTA 125
Query: 114 YGTFAG 119
G+ AG
Sbjct: 126 RGSPAG 131
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 37.4 bits (85), Expect = 0.020
Identities = 38/112 (33%), Positives = 41/112 (36%), Gaps = 30/112 (26%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAAWLRDLCARMARPPRQHPGVWASL 66
GGGG GG A+ GG G PA + P AA A LR A PPR
Sbjct: 42 GGGGGGGGAS-----GGTSGSCSPASSE--PPAAPADRLR---AESPSPPR--------- 82
Query: 67 LLLLLTGPAACAASPADDGAGPGGRGPRGRARGDTGADEAVPRHDSSYGTFA 118
LL A P GAG GG G TG P H + G A
Sbjct: 83 ---LLAAHCALLPKPGFLGAGGGG--------GGTGGGHGGPHHHAHPGAAA 123
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 37.0 bits (84), Expect = 0.026
Identities = 36/101 (35%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 6 QGGGGAGGSAAARARAGGLGGGSVP-ARARGAPAAARAAWLRDLCARMARPPRQHPGVWA 64
+GGGG A A G G P A A APAA AA L R PP + P
Sbjct: 96 RGGGGGAEKATPLAPKGAAPGAVQPVAGAEAAPAATLAA----LGGRRPGPPEEPPRELE 151
Query: 65 SLLLLLLTGPAACAASPADDGAGPGGRGPRGRARGDTGADE 105
S+ L P P +G G GG G G A G +G E
Sbjct: 152 SVPSKLGEPP------PLGEGGGGGGEG--GGAGGGSGERE 184
>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 37.0 bits (84), Expect = 0.026
Identities = 37/120 (30%), Positives = 45/120 (37%), Gaps = 23/120 (19%)
Query: 6 QGGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAAWLRDLCARMARP-----PRQHP 60
+GGGG GG+ A AGG G RAR + R C R P P++
Sbjct: 50 KGGGGGGGAGGAEGGAGGAG------RARERAESGRP------CGRRRHPQAEPAPKEFQ 97
Query: 61 GVWASLLLLLLTGPAACAASPADDGAGPGGRGPRGRARGDTGADEAVPRHDSSYGTFAGE 120
G A+ LT A +A PA G G G RG E P + AGE
Sbjct: 98 GDGAAARADALT--AGKSAEPAPGGEG----GERGEESASERESERAPGRGPGARSSAGE 151
>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 37.0 bits (84), Expect = 0.026
Identities = 37/120 (30%), Positives = 45/120 (37%), Gaps = 23/120 (19%)
Query: 6 QGGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAAWLRDLCARMARP-----PRQHP 60
+GGGG GG+ A AGG G RAR + R C R P P++
Sbjct: 50 KGGGGGGGAGGAEGGAGGAG------RARERAESGRP------CGRRRHPQAEPAPKEFQ 97
Query: 61 GVWASLLLLLLTGPAACAASPADDGAGPGGRGPRGRARGDTGADEAVPRHDSSYGTFAGE 120
G A+ LT A +A PA G G G RG E P + AGE
Sbjct: 98 GDGAAARADALT--AGKSAEPAPGGEG----GERGEESASERESERAPGRGPGARSSAGE 151
>gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 37.0 bits (84), Expect = 0.026
Identities = 37/120 (30%), Positives = 45/120 (37%), Gaps = 23/120 (19%)
Query: 6 QGGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAAWLRDLCARMARP-----PRQHP 60
+GGGG GG+ A AGG G RAR + R C R P P++
Sbjct: 19 KGGGGGGGAGGAEGGAGGAG------RARERAESGRP------CGRRRHPQAEPAPKEFQ 66
Query: 61 GVWASLLLLLLTGPAACAASPADDGAGPGGRGPRGRARGDTGADEAVPRHDSSYGTFAGE 120
G A+ LT A +A PA G G G RG E P + AGE
Sbjct: 67 GDGAAARADALT--AGKSAEPAPGGEG----GERGEESASERESERAPGRGPGARSSAGE 120
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 36.2 bits (82), Expect = 0.044
Identities = 45/162 (27%), Positives = 55/162 (33%), Gaps = 44/162 (27%)
Query: 2 RRPRQGGGGA----GGSAAARARAGGL------------------------GGGSVPARA 33
R PR GGGG GG+ RAR GG G + PA
Sbjct: 36 RGPRAGGGGGDAGGGGAPVRRARGGGCWARAYQDARCFGRGEGGDLQVSSGPGAAPPAEF 95
Query: 34 RGAPAAARAAWLRDLCARMARPPR-QHPGVWASL---------LLLLLTGPAACAASPAD 83
R + +A+ + RD+ A PPR P AS L P C +
Sbjct: 96 RASARSAQGS--RDVPAGPGFPPRLPRPFTSASFSNQTRLRRRSASALPAPRLCPQRASP 153
Query: 84 DGAGPGGRGPRG----RARGDTGADEAVPRHDSSYGTFAGEF 121
+ PG RGP G RARG A R + G F
Sbjct: 154 GCSSPGVRGPGGGASPRARGGNAAAALAARQAAGGGRSRSAF 195
Score = 32.7 bits (73), Expect = 0.49
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 4 PRQGGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAAWLRDLCARMARPPR 57
PR GG A + AAR AGG R+R A A R A L CA++ R PR
Sbjct: 169 PRARGGNAAAALAARQAAGG-------GRSRSAFVAGRDAAL--ACAQLPRRPR 213
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 36.2 bits (82), Expect = 0.044
Identities = 45/162 (27%), Positives = 55/162 (33%), Gaps = 44/162 (27%)
Query: 2 RRPRQGGGGA----GGSAAARARAGGL------------------------GGGSVPARA 33
R PR GGGG GG+ RAR GG G + PA
Sbjct: 36 RGPRAGGGGGDAGGGGAPVRRARGGGCWARAYQDARCFGRGEGGDLQVSSGPGAAPPAEF 95
Query: 34 RGAPAAARAAWLRDLCARMARPPR-QHPGVWASL---------LLLLLTGPAACAASPAD 83
R + +A+ + RD+ A PPR P AS L P C +
Sbjct: 96 RASARSAQGS--RDVPAGPGFPPRLPRPFTSASFSNQTRLRRRSASALPAPRLCPQRASP 153
Query: 84 DGAGPGGRGPRG----RARGDTGADEAVPRHDSSYGTFAGEF 121
+ PG RGP G RARG A R + G F
Sbjct: 154 GCSSPGVRGPGGGASPRARGGNAAAALAARQAAGGGRSRSAF 195
Score = 32.7 bits (73), Expect = 0.49
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 4 PRQGGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAAWLRDLCARMARPPR 57
PR GG A + AAR AGG R+R A A R A L CA++ R PR
Sbjct: 169 PRARGGNAAAALAARQAAGG-------GRSRSAFVAGRDAAL--ACAQLPRRPR 213
>gi|239753043 PREDICTED: hypothetical protein [Homo sapiens]
Length = 451
Score = 35.4 bits (80), Expect = 0.075
Identities = 34/89 (38%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 18 RARAGG-LGGGSVPARARGAPAAARAAWLRDLCARMARPPRQHPGVWASLLLLLLTGPAA 76
RAR GG +G G AR AP A L +LC PP PG A+ L L P A
Sbjct: 52 RARPGGVVGWGPGGGLARAAP-AMNGLSLSELCCLFCCPP--CPGRIAAKLAFL--PPEA 106
Query: 77 CAASPADDGAGPGGRG--PRGRARGDTGA 103
+ + GPGG G P G R +GA
Sbjct: 107 TYSLVTEPEPGPGGAGAAPLGTLRASSGA 135
>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
sapiens]
Length = 304
Score = 35.4 bits (80), Expect = 0.075
Identities = 44/136 (32%), Positives = 50/136 (36%), Gaps = 37/136 (27%)
Query: 2 RRPRQGGGGAGGSAAARARAGGLGGGSVPARARG------------------APAAARA- 42
R PR G GA G AA R G GGG R RG +P+ R+
Sbjct: 77 RSPRGAGPGAAGPRAA-GRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRGCHSPSCCRSS 135
Query: 43 --AWLR--DLCARMARP-----------PRQHPGVWASLLL--LLLTGPAACAASPADDG 85
AW R L R A P PR P + A+L + G AA A P
Sbjct: 136 SCAWHRWPQLRGREAEPRASPALLICIAPRPRPALPAALHIGARATAGLAAKRAQPQLCS 195
Query: 86 AGPGGRGPRGRARGDT 101
AG RG R RA T
Sbjct: 196 AGTAARGRRTRASPPT 211
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 73 GPAACAA-----SPADDGAGPGGRGPRGRARGDTG 102
GPAA +A S + GAGPG GPR RG G
Sbjct: 64 GPAAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAG 98
>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
sapiens]
Length = 304
Score = 35.4 bits (80), Expect = 0.075
Identities = 44/136 (32%), Positives = 50/136 (36%), Gaps = 37/136 (27%)
Query: 2 RRPRQGGGGAGGSAAARARAGGLGGGSVPARARG------------------APAAARA- 42
R PR G GA G AA R G GGG R RG +P+ R+
Sbjct: 77 RSPRGAGPGAAGPRAA-GRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRGCHSPSCCRSS 135
Query: 43 --AWLR--DLCARMARP-----------PRQHPGVWASLLL--LLLTGPAACAASPADDG 85
AW R L R A P PR P + A+L + G AA A P
Sbjct: 136 SCAWHRWPQLRGREAEPRASPALLICIAPRPRPALPAALHIGARATAGLAAKRAQPQLCS 195
Query: 86 AGPGGRGPRGRARGDT 101
AG RG R RA T
Sbjct: 196 AGTAARGRRTRASPPT 211
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 73 GPAACAA-----SPADDGAGPGGRGPRGRARGDTG 102
GPAA +A S + GAGPG GPR RG G
Sbjct: 64 GPAAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAG 98
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 35.4 bits (80), Expect = 0.075
Identities = 34/115 (29%), Positives = 43/115 (37%), Gaps = 18/115 (15%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARA-------RGAPAAARAAWLRDLCARMARP---- 55
GGGG GG AGG GGG P A RG P++ + + MA
Sbjct: 30 GGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMVQSDFMQGAMAASNGGH 89
Query: 56 PRQHPGVWASLLLLLLTGPAACAASPADDGAGPGGRGP-RGRARGDTGADEAVPR 109
H W + L P A AA+ A A P G A G G+ + P+
Sbjct: 90 MLSHAHQWVTAL------PHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQ 138
Score = 31.2 bits (69), Expect = 1.4
Identities = 32/106 (30%), Positives = 38/106 (35%), Gaps = 28/106 (26%)
Query: 4 PRQGGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAAWLRDLCARMARPPR----QH 59
P QG G G+AAA A A A AAA AA L + PP+
Sbjct: 179 PHQGHPGGWGAAAAAAAA--------------AAAAAAAAHLPSMAGGQQPPPQSLLYSQ 224
Query: 60 PGVWASLLLLLLTGPAACAASPADDGAGPGGRGPR----GRARGDT 101
PG + + G + P G G GG G RGDT
Sbjct: 225 PGGFT------VNGMLSAPPGPGGGGGGAGGGAQSLVHPGLVRGDT 264
>gi|239756517 PREDICTED: hypothetical protein [Homo sapiens]
Length = 316
Score = 34.7 bits (78), Expect = 0.13
Identities = 44/136 (32%), Positives = 50/136 (36%), Gaps = 37/136 (27%)
Query: 2 RRPRQGGGGAGGSAAARARAGGLGGGSVPARARG------------------APAAARA- 42
R PR G GA G AA R G GGG R RG +P+ R+
Sbjct: 77 RSPRGAGPGAAGPRAA-GRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRGCHSPSCCRSS 135
Query: 43 --AWLR--DLCARMARP-----------PRQHPGVWASLLL--LLLTGPAACAASPADDG 85
AW R L R A P PR P + A+L + G AA A P
Sbjct: 136 SCAWHRWPQLRGREADPRASPALLICIAPRPRPALPAALHIGARATAGLAAKRAQPQLCS 195
Query: 86 AGPGGRGPRGRARGDT 101
AG RG R RA T
Sbjct: 196 AGTAARGRRTRASPPT 211
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 73 GPAACAA-----SPADDGAGPGGRGPRGRARGDTG 102
GPAA +A S + GAGPG GPR RG G
Sbjct: 64 GPAAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAG 98
>gi|61835232 growth differentiation factor 7 preproprotein [Homo
sapiens]
Length = 450
Score = 34.7 bits (78), Expect = 0.13
Identities = 37/135 (27%), Positives = 51/135 (37%), Gaps = 10/135 (7%)
Query: 3 RPRQG--------GGGAGGSAAARARAGGLGGGSVPARARGAPAAARAAWLRDLCARMAR 54
RPR G GAG + GG GGG A+A GA A AA R AR A
Sbjct: 18 RPRDGLEAAAVLRAAGAGPVRSPGGGGGGGGGGRTLAQAAGAAAVPAAAVPRARAARRAA 77
Query: 55 PPRQHPGVWASLLLLLLTGPAACAASPADDGAGPGGRGPRGRARGDTGADEAVPRHDSSY 114
G ++ + +PA GA GRA TG + + +S+
Sbjct: 78 GSGFRNGSVVPHHFMMSLYRSLAGRAPA--GAAAVSASGHGRADTITGFTDQATQDESAA 135
Query: 115 GTFAGEFYDLRYLSE 129
T +D+ L++
Sbjct: 136 ETGQSFLFDVSSLND 150
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 34.3 bits (77), Expect = 0.17
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARGAPAAARA 42
GGGG GG GG GGG P R AA R+
Sbjct: 70 GGGGGGGGVGGGGAGGGAGGGRSPVRELDMGAAERS 105
Score = 32.0 bits (71), Expect = 0.83
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 3 RPRQGGGGAGGSAAARARAGGLGGGSVPARARGAPAAAR 41
R GGGG GG GG+GGG A G + R
Sbjct: 57 RAAGGGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVR 95
Score = 28.5 bits (62), Expect = 9.2
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARGAPAAARAAWLRDLCARMARPPRQHPG 61
GGGG GG GG GGG V G A + +R+L A R+ PG
Sbjct: 60 GGGGGGGGGGG----GGGGGGGVGGGGAGGGAGGGRSPVRELDMGAAERSRE-PG 109
>gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo
sapiens]
Length = 330
Score = 34.3 bits (77), Expect = 0.17
Identities = 50/171 (29%), Positives = 62/171 (36%), Gaps = 41/171 (23%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARG--APAAARAAWLRDLC------ARMARPPRQ 58
GGGG G+ A AR G GGG P R R +P A+ +C A M R PR
Sbjct: 73 GGGGERGAPAGGAR--GSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRS 130
Query: 59 HPGVWASLLLLLLTG----------PAACAASPADDGAGPGGRGPRGRAR---------G 99
+ + TG A + P D GGR P G AR G
Sbjct: 131 GRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSG 190
Query: 100 DTGADE-----AVPRHDSSYG-TFAGEFYDLRYLSEEGY------PFPTAP 138
TG+ A D +G GE + R+L G PFP+ P
Sbjct: 191 PTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRP 241
>gi|239756649 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 34.3 bits (77), Expect = 0.17
Identities = 41/129 (31%), Positives = 53/129 (41%), Gaps = 27/129 (20%)
Query: 1 MRRPRQGGGGAGGSAAARARAGGLGGG---SVPARARGA------PAAA-----RAAWLR 46
+ RPRQ G +AA RA +PAR++ A P AA R W+
Sbjct: 160 LTRPRQARGARDKAAATRAALSFSACALPRRLPARSQAAGRVRKIPGAAQFFPGRGEWVG 219
Query: 47 DLCARMARPPRQ---HPGVWASLL------LLLLTGPAACAASPADDG--AGPGGRGPRG 95
++RP + P V A + L TG A +PA A P GRG RG
Sbjct: 220 GPSRELSRPAARTGVEPAVPAMVTTGRPPHLRFATGLCASGKAPAQGAFPAAPPGRGRRG 279
Query: 96 RARGDTGAD 104
AR TGA+
Sbjct: 280 PAR--TGAE 286
>gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo
sapiens]
Length = 330
Score = 34.3 bits (77), Expect = 0.17
Identities = 50/171 (29%), Positives = 62/171 (36%), Gaps = 41/171 (23%)
Query: 7 GGGGAGGSAAARARAGGLGGGSVPARARG--APAAARAAWLRDLC------ARMARPPRQ 58
GGGG G+ A AR G GGG P R R +P A+ +C A M R PR
Sbjct: 73 GGGGERGAPAGGAR--GSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRS 130
Query: 59 HPGVWASLLLLLLTG----------PAACAASPADDGAGPGGRGPRGRAR---------G 99
+ + TG A + P D GGR P G AR G
Sbjct: 131 GRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSG 190
Query: 100 DTGADE-----AVPRHDSSYG-TFAGEFYDLRYLSEEGY------PFPTAP 138
TG+ A D +G GE + R+L G PFP+ P
Sbjct: 191 PTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRP 241
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,435,024
Number of Sequences: 37866
Number of extensions: 913821
Number of successful extensions: 7706
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 250
Number of HSP's that attempted gapping in prelim test: 6007
Number of HSP's gapped (non-prelim): 1489
length of query: 344
length of database: 18,247,518
effective HSP length: 103
effective length of query: 241
effective length of database: 14,347,320
effective search space: 3457704120
effective search space used: 3457704120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.