Guide to the Human Genome
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Name: FAM108A4 Sequence: fasta or formatted (451aa) NCBI GI: 239753043
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         45           2
 C cysteine            3.5         16           2
 D aspartate           3.3         15           1
 E glutamate           4.7         21           1
 F phenylalanine       3.1         14           1
 G glycine            10.9         49           3
 H histidine           2.2         10           1
 I isoleucine          3.8         17           2
 K lysine              2.7         12           3
 L leucine             8.9         40           2
 M methionine          1.3          6           1
 N asparagine          2.7         12           1
 P proline             9.8         44           2
 Q glutamine           2.2         10           1
 R arginine            7.1         32           2
 S serine              8.6         39           2
 T threonine           5.8         26           1
 V valine              4.7         21           2
 W tryptophan          1.3          6           1
 Y tyrosine            3.5         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289252          0.779   PREDICTED: hypothetical protein XP_002342156 
FAM108A5              0.646   PREDICTED: family with sequence similarity 108, mem...
FAM108A5              0.646   PREDICTED: family with sequence similarity 108, mem...
FAM108A5              0.646   PREDICTED: hypothetical protein LOC729495 
FAM108A1              0.643   hypothetical protein LOC81926 isoform 2 
FAM108A1              0.617   hypothetical protein LOC81926 isoform 1 
FAM108C1              0.511   hypothetical protein LOC58489 
FAM108B1              0.484   family with sequence similarity 108, member B1 isofo...
FAM108B1              0.483   family with sequence similarity 108, member B1 isofo...
ABHD13                0.060   abhydrolase domain containing 13 
ABHD12B               0.049   abhydrolase domain containing 12B isoform c 
ABHD12B               0.049   abhydrolase domain containing 12B isoform b 
ABHD12                0.038   abhydrolase domain containing 12 isoform a 
ABHD12                0.038   abhydrolase domain containing 12 isoform b 
LOC100132891          0.024   PREDICTED: hypothetical protein 
LOC100132891          0.024   PREDICTED: hypothetical protein 
LOC100132891          0.024   PREDICTED: hypothetical protein 
BAT5                  0.021   HLA-B associated transcript 5 
TAF4                  0.019   TBP-associated factor 4 
LOC100289316          0.016   PREDICTED: hypothetical protein 
LOC100289316          0.016   PREDICTED: hypothetical protein XP_002343619 
FOXO6                 0.014   PREDICTED: forkhead box protein O6 
ASAP2                 0.014   ArfGAP with SH3 domain, ankyrin repeat and PH domai...
BSN                   0.013   bassoon protein 
C20orf135             0.012   hypothetical protein LOC140701 
FOXO6                 0.012   PREDICTED: forkhead box protein O6 
SYN1                  0.012   synapsin I isoform Ia 
SYN1                  0.012   synapsin I isoform Ib 
KIAA0907              0.012   hypothetical protein LOC22889 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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