Guide to the Human Genome
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Name: FRRS1 Sequence: fasta or formatted (626aa) NCBI GI: 147900821
Description:

stromal cell derived factor receptor 2 homolog

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         40           2
 C cysteine            2.6         16           1
 D aspartate           4.3         27           3
 E glutamate           3.5         22           1
 F phenylalanine       5.6         35           2
 G glycine             6.2         39           2
 H histidine           3.8         24           1
 I isoleucine          5.3         33           4
 K lysine              4.6         29           2
 L leucine             9.7         61           3
 M methionine          4.0         25           2
 N asparagine          2.6         16           1
 P proline             6.2         39           2
 Q glutamine           4.0         25           2
 R arginine            3.8         24           2
 S serine              8.0         50           2
 T threonine           6.1         38           3
 V valine              7.3         46           2
 W tryptophan          2.4         15           1
 Y tyrosine            3.5         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   stromal cell derived factor receptor 2 homolog [Hom... 
C9orf4                0.037   hypothetical protein LOC23732 
SPON1                 0.016   spondin 1, extracellular matrix protein 
ABCA2                 0.006   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA2                 0.006   ATP-binding cassette, sub-family A, member 2 isoform...
CPEB3                 0.004   cytoplasmic polyadenylation element binding protein ...
CRKRS                 0.004   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.004   Cdc2-related kinase, arginine/serine-rich isoform 1...
COL6A3                0.004   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.004   alpha 3 type VI collagen isoform 1 precursor 
COL6A3                0.004   alpha 3 type VI collagen isoform 4 precursor 
NR2C1                 0.004   nuclear receptor subfamily 2, group C, member 1 iso...
UBR3                  0.004   E3 ubiquitin-protein ligase UBR3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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