Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100291627 Sequence: fasta or formatted (330aa) NCBI GI: 239757337
Description:

PREDICTED: hypothetical protein XP_002345251

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         38           4
 C cysteine            3.3         11           1
 D aspartate           2.4          8           2
 E glutamate           3.6         12           1
 F phenylalanine       3.3         11           2
 G glycine            16.1         53           4
 H histidine           0.9          3           1
 I isoleucine          1.2          4           1
 K lysine              1.5          5           1
 L leucine             3.9         13           1
 M methionine          1.2          4           1
 N asparagine          0.9          3           1
 P proline            13.0         43           3
 Q glutamine           1.5          5           1
 R arginine           12.7         42           2
 S serine             12.7         42           2
 T threonine           5.8         19           2
 V valine              2.7          9           1
 W tryptophan          1.2          4           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345251 
LOC100289867          1.000   PREDICTED: hypothetical protein XP_002348034 
LOC100288231          0.517   PREDICTED: hypothetical protein XP_002343737 
COL1A1                0.051   alpha 1 type I collagen preproprotein 
TAF4                  0.048   TBP-associated factor 4 
FLJ31945              0.044   PREDICTED: hypothetical protein 
WTIP                  0.042   Wilms tumor 1 interacting protein 
FLJ31945              0.039   PREDICTED: hypothetical protein 
FLJ31945              0.039   PREDICTED: hypothetical protein 
PRR12                 0.038   proline rich 12 
MAP7D1                0.038   MAP7 domain containing 1 
COL5A2                0.036   alpha 2 type V collagen preproprotein 
TNRC18                0.036   trinucleotide repeat containing 18 
COL2A1                0.035   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.035   collagen, type II, alpha 1 isoform 2 precursor [Hom...
ATXN2                 0.035   ataxin 2 
LOR                   0.035   loricrin 
WIPF1                 0.035   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.035   WAS/WASL interacting protein family, member 1 
FLJ37078              0.035   hypothetical protein LOC222183 
IRS4                  0.033   insulin receptor substrate 4 
KIAA1522              0.033   hypothetical protein LOC57648 
LOC729370             0.033   PREDICTED: hypothetical protein 
ARID1B                0.033   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.033   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.033   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
WIPF3                 0.033   WAS/WASL interacting protein family, member 3 [Homo...
COL3A1                0.032   collagen type III alpha 1 preproprotein 
ARHGAP17              0.032   nadrin isoform 1 
RUSC2                 0.032   RUN and SH3 domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press