Guide to the Human Genome
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Name: LOC100129216 Sequence: fasta or formatted (70aa) NCBI GI: 169203494
Description:

PREDICTED: similar to defensin, beta 131

Not currently referenced in the text

Other entries for this name:
alt mRNA {70aa} PREDICTED: similar to defensin, beta 131
alt mRNA {70aa} PREDICTED: similar to defensin, beta 131
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3          3           1
 C cysteine            8.6          6           2
 D aspartate           5.7          4           1
 E glutamate           4.3          3           1
 F phenylalanine       7.1          5           2
 G glycine             2.9          2           1
 H histidine           2.9          2           1
 I isoleucine          7.1          5           2
 K lysine              7.1          5           2
 L leucine             7.1          5           1
 M methionine          2.9          2           1
 N asparagine          2.9          2           1
 P proline             4.3          3           2
 Q glutamine           2.9          2           1
 R arginine            5.7          4           1
 S serine              8.6          6           1
 T threonine           4.3          3           1
 V valine              5.7          4           1
 W tryptophan          1.4          1           1
 Y tyrosine            4.3          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to defensin, beta 131 
LOC100129216          1.000   PREDICTED: similar to defensin, beta 131 
LOC100129216          1.000   PREDICTED: similar to defensin, beta 131 
LOC100128174          0.953   PREDICTED: hypothetical protein 
LOC100128174          0.953   PREDICTED: similar to defensin, beta 131 
DEFB131               0.938   defensin, beta 131 
LOC100128174          0.930   PREDICTED: similar to defensin, beta 131 
LOC100287066          0.915   PREDICTED: hypothetical protein XP_002342880 
DEFB114               0.078   beta-defensin 114 
DEFB123               0.070   defensin, beta 123 precursor 
DEFB129               0.047   beta defensin 129 precursor 
DEFB106A              0.039   defensin, beta 106A precursor 
DEFB118               0.039   beta-defensin 118 
DEFB106B              0.039   defensin, beta 106B precursor 
MEGF6                 0.031   EGF-like-domain, multiple 3 
DEFB104A              0.023   defensin, beta 104A precursor 
DEFB104B              0.023   defensin, beta 104B precursor 
DEFB125               0.016   defensin, beta 125 preproprotein 
DEFB108B              0.008   beta-defensin 108B 
LOC100133128          0.008   PREDICTED: hypothetical protein 
DEFB124               0.008   beta-defensin 124 
DEFB119               0.008   defensin, beta 119 isoform c precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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