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Search of human proteins with 23312394
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23312394 tigger transposable element derived 3 [Homo
sapiens]
(471 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23312394 tigger transposable element derived 3 [Homo sapiens] 954 0.0
gi|22219477 tigger transposable element derived 4 [Homo sapiens] 176 4e-44
gi|21735415 centromere protein B [Homo sapiens] 145 1e-34
gi|13569924 hypothetical protein LOC81789 [Homo sapiens] 128 1e-29
gi|22547224 jerky homolog-like [Homo sapiens] 106 5e-23
gi|23312392 tigger transposable element derived 2 [Homo sapiens] 101 1e-21
gi|117938293 jerky isoform a [Homo sapiens] 82 8e-16
gi|117938295 jerky isoform b [Homo sapiens] 82 8e-16
gi|144922631 tigger transposable element derived 5 [Homo sapiens] 75 2e-13
gi|22325392 tigger transposable element derived 7 [Homo sapiens] 72 8e-13
gi|22209001 hypothetical protein LOC200765 [Homo sapiens] 72 8e-13
gi|239755627 PREDICTED: similar to cag [Homo sapiens] 50 4e-06
gi|239750125 PREDICTED: hypothetical protein XP_002347296 [Homo ... 50 4e-06
gi|239744433 PREDICTED: hypothetical protein XP_002343159 [Homo ... 50 4e-06
gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens] 35 0.19
gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens] 35 0.19
gi|222080060 Smith-Magenis syndrome chromosome region, candidate... 32 0.95
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 32 1.6
gi|239047414 slingshot 1 isoform 1 [Homo sapiens] 31 2.1
gi|239047498 slingshot 1 isoform 3 [Homo sapiens] 31 2.1
gi|239047441 slingshot 1 isoform 2 [Homo sapiens] 31 2.1
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap... 30 4.7
gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens] 30 4.7
gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C... 30 4.7
gi|55741677 SET domain containing 1A [Homo sapiens] 30 4.7
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 30 4.7
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)... 30 4.7
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)... 30 4.7
gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapi... 30 4.7
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 30 6.2
>gi|23312394 tigger transposable element derived 3 [Homo sapiens]
Length = 471
Score = 954 bits (2466), Expect = 0.0
Identities = 471/471 (100%), Positives = 471/471 (100%)
Query: 1 MELSSKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWC 60
MELSSKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWC
Sbjct: 1 MELSSKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWC 60
Query: 61 SGTANRERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMGQDFVPS 120
SGTANRERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMGQDFVPS
Sbjct: 61 SGTANRERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMGQDFVPS 120
Query: 121 IGWLVRWKRRNNVGFGARHVLAPSFPPEPPPPGLTSQAQLPLSLKDFSPEDVFGCAELPL 180
IGWLVRWKRRNNVGFGARHVLAPSFPPEPPPPGLTSQAQLPLSLKDFSPEDVFGCAELPL
Sbjct: 121 IGWLVRWKRRNNVGFGARHVLAPSFPPEPPPPGLTSQAQLPLSLKDFSPEDVFGCAELPL 180
Query: 181 LYRAVPGSFGACDQVQVLLCANSRGTEKRRVLLGGLQAAPRCFFGIRSEALPASYHPDLG 240
LYRAVPGSFGACDQVQVLLCANSRGTEKRRVLLGGLQAAPRCFFGIRSEALPASYHPDLG
Sbjct: 181 LYRAVPGSFGACDQVQVLLCANSRGTEKRRVLLGGLQAAPRCFFGIRSEALPASYHPDLG 240
Query: 241 IPWLEWLAQFDRDMGQQGRQVALLLAARVVEELAGLPGLYHVKLLPLAASSTTPPLPSSV 300
IPWLEWLAQFDRDMGQQGRQVALLLAARVVEELAGLPGLYHVKLLPLAASSTTPPLPSSV
Sbjct: 241 IPWLEWLAQFDRDMGQQGRQVALLLAARVVEELAGLPGLYHVKLLPLAASSTTPPLPSSV 300
Query: 301 VRAFKAHYRHRLLGKLAAIQSERDGTSLAEAGAGITVLDALHVASAAWAKVPPQLIFSSF 360
VRAFKAHYRHRLLGKLAAIQSERDGTSLAEAGAGITVLDALHVASAAWAKVPPQLIFSSF
Sbjct: 301 VRAFKAHYRHRLLGKLAAIQSERDGTSLAEAGAGITVLDALHVASAAWAKVPPQLIFSSF 360
Query: 361 IQEGLAPGKTPPSSHKTSEMPPVPGGLSLEEFSRFVDLEGEEPRSGVCKEEIGTEDEKGD 420
IQEGLAPGKTPPSSHKTSEMPPVPGGLSLEEFSRFVDLEGEEPRSGVCKEEIGTEDEKGD
Sbjct: 361 IQEGLAPGKTPPSSHKTSEMPPVPGGLSLEEFSRFVDLEGEEPRSGVCKEEIGTEDEKGD 420
Query: 421 REGAFEPLPTKADALRALGTLRRWFECNSTSPELFEKFYDCEEEVERLCCL 471
REGAFEPLPTKADALRALGTLRRWFECNSTSPELFEKFYDCEEEVERLCCL
Sbjct: 421 REGAFEPLPTKADALRALGTLRRWFECNSTSPELFEKFYDCEEEVERLCCL 471
>gi|22219477 tigger transposable element derived 4 [Homo sapiens]
Length = 512
Score = 176 bits (446), Expect = 4e-44
Identities = 147/513 (28%), Positives = 243/513 (47%), Gaps = 70/513 (13%)
Query: 7 KKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTANR 66
KK +LS+ EKI ++ ++ K ++E+A + + + +S I KNK+K+L + S +
Sbjct: 16 KKKKSLSIEEKIDIINAVESGK-KKAEIAAEYGIKKNSLSSIMKNKDKVLEAFESLRFDP 74
Query: 67 ERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMG-QDFVPSIGWLV 125
+RKR R + Y+ ++EAL+ WY IA+ V GPML KA + A +G DF S GWL
Sbjct: 75 KRKRLRTAFYTDLEEALMRWYRIAQCLNVPVNGPMLRLKANDFAQKLGHNDFKCSNGWLD 134
Query: 126 RWKRRNNVGFGARHVLAPSFPPEPPPPGLTSQAQLPLSLKDFSPEDVFGCAELPLLYRAV 185
R+K R + F A+ V A P +P + Q LP L D+ P++VF E LLYR +
Sbjct: 135 RFKSRYGLVFRAQPVEATGVPVDPST--VWYQNVLPYYLNDYHPKNVFNIKETGLLYRML 192
Query: 186 PGSFGAC------------DQVQVLLCANSRGTEKRRVLLGGLQAAPRCFFGIRSEALPA 233
P + A D++ +++ N G+EK +L+ G + P CF G++S LP
Sbjct: 193 PTNTFAFKGETCSVGKLCKDRITLVVGTNMDGSEKLPLLVIGKKRTPHCFKGLKS--LPV 250
Query: 234 SYHPDLGIPWL------EWLAQFDRDMGQQGRQVALLLAARVVEELAGLPGLYHVKLLPL 287
Y + + W+ +W+ + D + Q R+V + VE P + ++K + L
Sbjct: 251 CYEAN-RMAWMTSDVFEQWMRKLDEEFQAQQRRVVIF-----VESFPAHPEVKNLKSIEL 304
Query: 288 A-----ASSTTPPLPSSVVRAFKAHYRHRLLGK-LAAIQSERDGTSLAEAGAGITVLDAL 341
A SS + V+++ K YRH L+ K L++++ ++ T ++LDA+
Sbjct: 305 AFFPSCLSSKCIAMKQGVIKSLKIKYRHCLIKKFLSSVEGSKEFT--------FSLLDAV 356
Query: 342 HVASAAWAKVPPQLIFSSFIQEGLAPGKTP---PSSHKTSEMPPV----------PGGLS 388
W V P+ I S+ + G K ++ K + + V P GLS
Sbjct: 357 DTLHLCWRAVTPETIVKSYEEAGFKSQKGESDITNAEKDTGLDLVADALGAGVEFPEGLS 416
Query: 389 LEEFSRFVD----LEGEEPRSGVCKEE-------IGTEDEKGD--REGAFEPLPTKADAL 435
+EE++ D E +C +E T DE+ D G PLP+K++A+
Sbjct: 417 IEEYAALDDDLETCEAAPNGDSICTKESKSDETGFYTSDEEDDDGSPGTELPLPSKSEAI 476
Query: 436 RALGTLRRWFECNSTSPELFEKFYDCEEEVERL 468
AL TL+++ + L D E + L
Sbjct: 477 TALDTLKKFLRSQDMNDGLQNSLADLENFINSL 509
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 145 bits (365), Expect = 1e-34
Identities = 136/455 (29%), Positives = 202/455 (44%), Gaps = 58/455 (12%)
Query: 8 KLHALSLAEKIQVLELLDESK-MSQSEVARRFQVSQPQISRICKNKEKLLADWCS-GTAN 65
K L+ EK ++++ ++E+ + + E+ARRF + +S I KNK +LA G A+
Sbjct: 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVAS 63
Query: 66 RERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMG-QDFVPSIGWL 124
RK + S Y ++ L+ W+ RA V G +L KA +A+ +G DF S GWL
Sbjct: 64 TCRKTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWL 123
Query: 125 VRWKRRNNV------------GFGARHVLAPSFPPEPPPPG--------LTSQAQLPLSL 164
R++RR+ V R AP+ P P G + Q P
Sbjct: 124 DRFRRRHGVVSCSGVARARARNAAPRTPAAPASPAAVPSEGSGGSTTGWRAREEQPPSVA 183
Query: 165 KDFSPEDVFGCAELPLLYRAVP-------GSFG----ACDQVQVLLCANSRGTEKRRVLL 213
+ ++ +DVF E L Y +P G G A ++ VLLCAN+ G+EK L+
Sbjct: 184 EGYASQDVFSATETSLWYDFLPDQAAGLCGGDGRPRQATQRLSVLLCANADGSEKLPPLV 243
Query: 214 GGLQAAPRCFFGIRSEALPASYHPDL--GI---PWLEWLAQFDRDMGQQGRQVALLLAAR 268
G A PR LP Y + G+ ++L D M + R+V LLLA R
Sbjct: 244 AGKSAKPRA----GQAGLPCDYTANSKGGVTTQALAKYLKALDTRMAAESRRV-LLLAGR 298
Query: 269 VVEELAGLPGLYHVKLLPLAASSTTPPLPSSVVRAFKAHYRHRLLGKLAAIQSERDGTSL 328
+ + GL HV+ L T PL VV+ K HYR +L K A +D
Sbjct: 299 LAAQSLDTSGLRHVQ-LAFFPPGTVHPLERGVVQQVKGHYRQAMLLKAMAALEGQD---- 353
Query: 329 AEAGAGITVLDALHVASAAWAKVPPQLIFSSFIQEGLAPGKTPPSSHKTSEMPPVPGGLS 388
+G + + +ALH +AAW V P I + F + G G P++ T+ +
Sbjct: 354 -PSGLQLGLTEALHFVAAAWQAVEPSDIAACFREAGFGGG---PNATITTSLKS-----E 404
Query: 389 LEEFSRFVDLEGEEPRSGVCKEEIGTEDEKGDREG 423
EE + E EE G +EE G E+E+ EG
Sbjct: 405 GEEEEEEEEEEEEEEGEGEEEEEEGEEEEEEGGEG 439
>gi|13569924 hypothetical protein LOC81789 [Homo sapiens]
Length = 521
Score = 128 bits (322), Expect = 1e-29
Identities = 123/496 (24%), Positives = 215/496 (43%), Gaps = 69/496 (13%)
Query: 1 MELSSKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWC 60
M KK SL EK++V+ +D K + +VA+ F ++ +S K++ K
Sbjct: 1 MANKGNKKRRQFSLEEKMKVVGAVDSGKR-KGDVAKEFGITPSTLSTFLKDRTKFEEKVR 59
Query: 61 SGTANRERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMGQD-FVP 119
+ +RKR R + Y ID+A+ W+ AK VTG ++ KA LA+++G D F
Sbjct: 60 EASVGPQRKRMRSALYDDIDKAVFAWFQEIHAKNILVTGSVIRKKALNLANMLGYDNFQA 119
Query: 120 SIGWLVRWKRRNNVGFGARHVLAPSFPPEPPPPGLTS-----QAQLPLSLKDFSPEDVFG 174
S+GWL R++ R+ + A V G+ ++ + D+SP+D+F
Sbjct: 120 SVGWLNRFRDRHGIALKA--VCREDSDRLMNGLGIDKINEWHAGEIIKLIADYSPDDIFN 177
Query: 175 CAELPLLYRAVP------------GSFGACDQVQVLLCANSRGTEKRRVLLGGLQAAPRC 222
E + ++ +P G A ++ L C N+ GTEK R L+ G A+P C
Sbjct: 178 ADETGVFFQLLPQHTLAAKGDHCRGGKKAKQRLTALFCCNASGTEKMRPLIVGRSASPHC 237
Query: 223 FFGIRSEALPASYHPDLGIPWL------EWLAQFDRDMGQQGRQVALLLAARVVEELAGL 276
I S LP Y + W+ EWL Q D M + R++ LL+ + L
Sbjct: 238 LKNIHS--LPCDYRANQW-AWMTRDLFNEWLMQVDARMKRAERRILLLIDNCSAHNM--L 292
Query: 277 PGLYHVKL--LPLAASSTTPPLPSSVVRAFKAHYRHRLLGK-LAAIQSERDGTSLAEAGA 333
P L +++ LP ++ PL ++ K Y+ LL + L + S D
Sbjct: 293 PHLERIQVGYLPSNCTAVLQPLNLGIIHTMKVLYQSHLLKQILLKLNSSEDQEE------ 346
Query: 334 GITVLDALHVASAAWAKVPPQLIFSSFIQEGLAPGKTPPSSHKTSEMPP----------- 382
+ + A+ + +AAW V P + + + G+ P + +++ P
Sbjct: 347 -VDIKQAIDMIAAAWWSVKPSTVVKCWQKAGIVPMEFAECDTESAASEPDIAIEKLWHTV 405
Query: 383 -----VPGGLSLEEF---------SRFVDLEGEEPRSGVCKEEIGTEDEKGDREGAFEPL 428
VP ++ ++F S+ D+ ++ +G E G+EDE G+ +P
Sbjct: 406 AIATCVPNEVNFQDFVTADDDLIISQDTDII-QDMVAGENTSEAGSEDE-GEVSLPEQPK 463
Query: 429 PTKADALRALGTLRRW 444
T +A+ ++ LR++
Sbjct: 464 VTITEAISSVQKLRQF 479
>gi|22547224 jerky homolog-like [Homo sapiens]
Length = 524
Score = 106 bits (264), Expect = 5e-23
Identities = 100/395 (25%), Positives = 173/395 (43%), Gaps = 55/395 (13%)
Query: 3 LSSKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSG 62
+S K+K L++ +K+ +++ L++ S+ ++A + + + + I KNKEK++ S
Sbjct: 1 MSGKRKRVVLTIKDKLDIIKKLEDGGSSK-QLAVIYGIGETTVRDIRKNKEKIITYASSS 59
Query: 63 TANR---ERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMGQ--DF 117
+ +RK + S Y +D A+L W++ RAK ++GP+ +A+ +G DF
Sbjct: 60 DSTSLLAKRKSMKPSMYEELDRAMLEWFNQQRAKGNPISGPICAKRAEFFFYALGMDGDF 119
Query: 118 VPSIGWLVRWKRRNNVGFGARHVLAPSFPPEPPPPGLTSQAQLPLSLKDF------SPED 171
PS GWL R+K+R+++ R + + E T+ + +DF PE
Sbjct: 120 NPSAGWLTRFKQRHSI----REI---NIRNERLNGDETAVEDFCNNFRDFIERENLQPEQ 172
Query: 172 VFGCAELPLLYRAVPGSF----GAC---------DQVQVLLCANSRGTEKRRVLLGGLQA 218
++ E L ++ +P G C ++V ++ CAN+ G K ++ + G
Sbjct: 173 IYNADETGLFWKCLPSRISVIKGKCTVPGHKSIEERVTIMCCANATGLHKLKLCVVGKAK 232
Query: 219 APRCFFGIRSEALPASYHPDLGIPWL------EW--------LAQFDRDMGQQGRQVALL 264
PR F + LP SY G W+ +W + ++ R G Q + V LL
Sbjct: 233 KPRSFKSTDTLNLPVSYFSQKG-AWMDLSIFRQWFDKIFVPQVREYLRSKGLQEKAVLLL 291
Query: 265 LAARV---VEELAGLPGLYHVKLLPLAASSTTPPLPSSVVRAFKAHYRHRLLGKLAAIQS 321
+ L G K LP +S P V+ K +YR LL +
Sbjct: 292 DNSPTHPNENVLRSDDGQIFAKYLPPNVASLIQPSDQGVIATMKRNYRAGLLQ-----NN 346
Query: 322 ERDGTSLAEAGAGITVLDALHVASAAWAKVPPQLI 356
+G L +T+LDAL+ + AW V P I
Sbjct: 347 LEEGNDLKSFWKKLTLLDALYEIAMAWNLVKPVTI 381
>gi|23312392 tigger transposable element derived 2 [Homo sapiens]
Length = 525
Score = 101 bits (252), Expect = 1e-21
Identities = 102/411 (24%), Positives = 178/411 (43%), Gaps = 49/411 (11%)
Query: 6 KKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLL-----ADWC 60
K+K L++ +K+ +++ L+E +S +++ + + + + I KNKE+++ +D
Sbjct: 4 KRKRVVLTIKDKLDIIKKLEEG-ISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPT 62
Query: 61 SGTANRERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMGQ--DFV 118
SG + +RK + S Y +D ++ W++ + V+G + +AK D +G DF
Sbjct: 63 SGVS--KRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFN 120
Query: 119 PSIGWLVRWKRRNNVGFGARHVLAPSFPPEPPPPGLTSQAQLPLSLKDFSPEDVFGCAEL 178
S GWL R+K+R+ + A E Q + ++ PE ++G +
Sbjct: 121 ASSGWLTRFKQRHGIPKAAGKGTKLK-GDETAAREFCGSFQEFVEKENLQPEQIYGADQT 179
Query: 179 PLLYRAVPG---------SFGAC----DQVQVLLCANSRGTEKRRVLLGGLQAAPRCFFG 225
L ++ +P S C +++ ++ CAN+ G K + + G PR F G
Sbjct: 180 GLFWKCLPSRTLTLETDQSTSGCRSSRERIIIMCCANATGLHKLNLCVVGKAKKPRAFKG 239
Query: 226 IRSEALPASYHPDLGIPWLE-----------WLAQFDRDMGQQG--RQVALLL---AARV 269
LP +Y+ G W+E ++ Q + + +G + LLL AR
Sbjct: 240 TDLSNLPVTYYSQKG-AWIEQSVFRQWFEKYFVPQVQKHLKSKGLLEKAVLLLDFPPARP 298
Query: 270 VEE-LAGLPGLYHVKLLPLAASSTTPPLPSSVVRAFKAHYRHRLLGKLAAIQSERDGTSL 328
EE L+ G VK LP +S P+ V+ K +YR LL K +G
Sbjct: 299 NEEMLSSDDGRIIVKYLPPNVTSLIQPMSQGVLATVKRYYRAGLLQKYM-----DEGNDP 353
Query: 329 AEAGAGITVLDALHVASAAWAKVPPQLIFSSFIQEGLAPGKTPPSSHKTSE 379
+TVLDA++ S AW V I ++ + L PG S E
Sbjct: 354 KIFWKNLTVLDAIYEVSRAWNMVKSSTITKAW--KKLFPGNEENSGMNIDE 402
>gi|117938293 jerky isoform a [Homo sapiens]
Length = 568
Score = 82.4 bits (202), Expect = 8e-16
Identities = 120/478 (25%), Positives = 196/478 (41%), Gaps = 68/478 (14%)
Query: 6 KKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTAN 65
K+K L+L EKI + L++ + S+ + + + V + I +K +LL + S +N
Sbjct: 14 KRKRVVLTLKEKIDICTRLEKGE-SRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSN 72
Query: 66 RERKRKRE---SKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMG--QDFVPS 120
+ +++R K +D L W+ R++ V+GPML+ KAK+ + M + V S
Sbjct: 73 KALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFS 132
Query: 121 IGWLVRWKRRNNVGFGARHVLAPSFPPEPPPPGLTSQAQLPLSLK---DFSPEDVFGCAE 177
GWL R+K R+ G + + A S SL S E V+ E
Sbjct: 133 GGWLWRFKARH----GIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSAEQVYNADE 188
Query: 178 LPLLYR----------AVPGSFGACDQVQVLLCANSRGTEKRRVLLGGLQAAPRCFFGIR 227
L +R AVPG D++ VL+CAN+ G+ + + L G + PR F GI
Sbjct: 189 TGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLKPLAIGKCSGPRAFKGI- 247
Query: 228 SEALPASYHPDLGIPWL------EW--------LAQFDRDMG--QQGRQVALLLAARVVE 271
+ LP +Y G W+ +W + + R +G + + V LL ++R
Sbjct: 248 -QHLPVAYKAQ-GNAWVDKEIFSDWFHHIFVPSVREHFRTIGLPEDSKAVLLLDSSRAHP 305
Query: 272 ELAGL-PGLYHVKLLPLAASSTTPPLPSSVVRAFKAHYRH---RLLGKLAAIQSERDGTS 327
+ A L LP + +S P+ + R F ++ + L G A S
Sbjct: 306 QEAELVSSNVFTIFLPASVASLVQPMEQGIRRDFMRNFINPPVPLQGPHARYNMNDAIFS 365
Query: 328 LAEAGAGITVLDALHVASAAWAKVPPQLIFS--SFIQEGLAPGKTPPSSHKTS------- 378
+A A + HV AW K+ P + F+ S +E L P H S
Sbjct: 366 VACAWNAV----PSHVFRRAWRKLWPSVAFAEGSSSEEELEAECFPVKPHNKSFAHILEL 421
Query: 379 --EMPPVPGGLSLEEFSRF----VDLEGEEPRSGVCKEEIGTEDE---KGDREGAFEP 427
E PG L + + + + EG P + E+ E K D++G +P
Sbjct: 422 VKEGSSCPGQLRQRQAASWGVAGREAEGGRPPAATSPAEVVWSSEKTPKADQDGGGDP 479
>gi|117938295 jerky isoform b [Homo sapiens]
Length = 556
Score = 82.4 bits (202), Expect = 8e-16
Identities = 120/478 (25%), Positives = 196/478 (41%), Gaps = 68/478 (14%)
Query: 6 KKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTAN 65
K+K L+L EKI + L++ + S+ + + + V + I +K +LL + S +N
Sbjct: 14 KRKRVVLTLKEKIDICTRLEKGE-SRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSN 72
Query: 66 RERKRKRE---SKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMG--QDFVPS 120
+ +++R K +D L W+ R++ V+GPML+ KAK+ + M + V S
Sbjct: 73 KALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFS 132
Query: 121 IGWLVRWKRRNNVGFGARHVLAPSFPPEPPPPGLTSQAQLPLSLK---DFSPEDVFGCAE 177
GWL R+K R+ G + + A S SL S E V+ E
Sbjct: 133 GGWLWRFKARH----GIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSAEQVYNADE 188
Query: 178 LPLLYR----------AVPGSFGACDQVQVLLCANSRGTEKRRVLLGGLQAAPRCFFGIR 227
L +R AVPG D++ VL+CAN+ G+ + + L G + PR F GI
Sbjct: 189 TGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLKPLAIGKCSGPRAFKGI- 247
Query: 228 SEALPASYHPDLGIPWL------EW--------LAQFDRDMG--QQGRQVALLLAARVVE 271
+ LP +Y G W+ +W + + R +G + + V LL ++R
Sbjct: 248 -QHLPVAYKAQ-GNAWVDKEIFSDWFHHIFVPSVREHFRTIGLPEDSKAVLLLDSSRAHP 305
Query: 272 ELAGL-PGLYHVKLLPLAASSTTPPLPSSVVRAFKAHYRH---RLLGKLAAIQSERDGTS 327
+ A L LP + +S P+ + R F ++ + L G A S
Sbjct: 306 QEAELVSSNVFTIFLPASVASLVQPMEQGIRRDFMRNFINPPVPLQGPHARYNMNDAIFS 365
Query: 328 LAEAGAGITVLDALHVASAAWAKVPPQLIFS--SFIQEGLAPGKTPPSSHKTS------- 378
+A A + HV AW K+ P + F+ S +E L P H S
Sbjct: 366 VACAWNAV----PSHVFRRAWRKLWPSVAFAEGSSSEEELEAECFPVKPHNKSFAHILEL 421
Query: 379 --EMPPVPGGLSLEEFSRF----VDLEGEEPRSGVCKEEIGTEDE---KGDREGAFEP 427
E PG L + + + + EG P + E+ E K D++G +P
Sbjct: 422 VKEGSSCPGQLRQRQAASWGVAGREAEGGRPPAATSPAEVVWSSEKTPKADQDGGGDP 479
>gi|144922631 tigger transposable element derived 5 [Homo sapiens]
Length = 593
Score = 74.7 bits (182), Expect = 2e-13
Identities = 130/554 (23%), Positives = 208/554 (37%), Gaps = 123/554 (22%)
Query: 11 ALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKL--LADWCSGTANRER 68
A S+ +K+Q +E + + Q+ V R F V + K++ KL + G +R
Sbjct: 6 AYSIKDKLQAIERVKGGER-QASVCRDFGVPGGTLRGWLKDEPKLRWFLEQLGGEVGTQR 64
Query: 69 KRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELA-DIMGQD--FVPSIGWLV 125
K+ R + ID A+ W+ R ++GP++ +A+ A I G + F S GW
Sbjct: 65 KKMRLANEEEIDRAVYAWFLALRQHGVPLSGPLIQAQAEAFARQIYGPECTFKASHGWFW 124
Query: 126 RWKRRNNVG----FGARHVLAPSFPPEPP---PPGLTS---------QAQLPLSLKDFSP 169
RW++R+ + +G APS P PP P L S A P + +
Sbjct: 125 RWQKRHGISSQRFYGEAGPPAPSPAPGPPVKEEPALPSGAGPLPDRAPAPPPPAEGGYGD 184
Query: 170 EDVFGCAELPLLYRAVP----------GSFGAC------DQVQVLLCANSRGTEKRRVLL 213
E ++ + L ++ +P G C D+V VLL AN G+ K + L+
Sbjct: 185 EQIYSASVTGLYWKLLPEQAAPPGAGDPGAGGCGRRWRGDRVTVLLAANLTGSHKLKPLV 244
Query: 214 GGLQAAPRCFFGIRSEALPASYH--PD--LGIPWLE-W--------LAQFDRDMGQQGRQ 260
G P + PASY PD L P L W + ++ R Q +
Sbjct: 245 IGRLPDPPSLRHHNQDKFPASYRYSPDAWLSRPLLRGWFFEEFVPGVKRYLRRSCLQQKA 304
Query: 261 VALLLAARVVEELAGLPGLYH------------------------VKLLPLAASST---- 292
V L+ A +P L V++L L+ S+
Sbjct: 305 VLLVAHPPCPSPAASMPALDSEDAPVRCRPEPLGPPEELQTPDGAVRVLFLSKGSSRAHI 364
Query: 293 TPPLPSSVVRAFKAHYRHRLLGKLAAIQSERDGTSLAEAGAGITVLDALHVASAAWAKVP 352
PL VV AFK Y+ LL +LA S G+ L + + D L++A +W V
Sbjct: 365 PAPLEQGVVAAFKQLYKRELL-RLAV--SCASGSPL-DFMRSFMLKDMLYLAGLSWDLVQ 420
Query: 353 PQLIFSSFI---------QEGLAPGKTPPSSHKTSEMPPVPGG-----------LSLEEF 392
I ++ + G P + + +E V L+ EE
Sbjct: 421 AGSIERCWLLGLRAAFEPRPGEDSAGQPAQAEEAAEHSRVLSDLTHLAALAYKCLAPEEV 480
Query: 393 SRFVDLEGEEPRSGVCKEEIGT--------------------EDEKGDREGAFEPLPTKA 432
+ ++ L+ + C+EE+G EDE+ + +PT
Sbjct: 481 AEWLHLDDDGGPPEGCREEVGPALPPAAPPAPASLPSAMGGGEDEEEATDYGGTSVPTAG 540
Query: 433 DALRALGTLRRWFE 446
+A+R L T RW E
Sbjct: 541 EAVRGLETALRWLE 554
>gi|22325392 tigger transposable element derived 7 [Homo sapiens]
Length = 549
Score = 72.4 bits (176), Expect = 8e-13
Identities = 97/394 (24%), Positives = 158/394 (40%), Gaps = 55/394 (13%)
Query: 3 LSSKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSG 62
++ + K L+L EK++VL ++ + +S V F +S+ I KNK KL+ D+
Sbjct: 1 MNKRGKYTTLNLEEKMKVLSRIEAGRSLKS-VMDEFGISKSTFYDIKKNK-KLILDFVLK 58
Query: 63 -----TANRERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMGQ-D 116
+RKR +KY +D+A+ WY R+ V G L A+ A G+ D
Sbjct: 59 QDMPLVGAEKRKRTTGAKYGDVDDAVYMWYQQKRSAGVPVRGVELQAAAERFARCFGRTD 118
Query: 117 FVPSIGWLVRWKRR----NNVGFGARHVLAPSFPPEPPPPGLTSQAQLPLSLKDFSPEDV 172
F S GWL R++ R N G G + + + S EP + + + + +
Sbjct: 119 FKASTGWLFRFRNRHAIGNRKGCGEQVLSSVSENVEP----FRQKLSMIIKEEKLCLAQL 174
Query: 173 FGCAELPLLYRAVPGSFGAC-------------DQVQVLLCANSRGTEKRRVLLGGLQAA 219
+ E L ++++P + A +++ LCAN+ GT K + ++ G
Sbjct: 175 YSGDETDLFWKSMPENSQASRKDICLPGKKINKERLSAFLCANADGTHKLKSIIIGKSKL 234
Query: 220 PRCFFGIRSEALPASYHPDLGIPWL------EWLAQ-FDRDMGQQGRQV---------AL 263
P+ S LP Y P + W EW Q F ++ V AL
Sbjct: 235 PKSVKEDTS-TLPVIYKPSKDV-WFTRELFSEWFFQNFVPEVRHFQLNVLRFHDEDVRAL 292
Query: 264 LL-----AARVVEELAGLPGLYHVKLLPLAASSTTPPLPSSVVRAFKAHYRHRLLGKLAA 318
LL A E L G P S+ P+ V+ + K YR + L +
Sbjct: 293 LLLDSCPAHPSSESLTSEDGRIKCMFFPHNTSTLIQPMNQGVILSCKRLYRWKQLEESLV 352
Query: 319 IQSERDGTSLAEAGAGITVLDALHVASAA--WAK 350
I E D + G++ + ++ SA WAK
Sbjct: 353 IFEESDDEQ-EKGDKGVSKIKIYNIKSAIFNWAK 385
>gi|22209001 hypothetical protein LOC200765 [Homo sapiens]
Length = 591
Score = 72.4 bits (176), Expect = 8e-13
Identities = 88/390 (22%), Positives = 167/390 (42%), Gaps = 44/390 (11%)
Query: 4 SSKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGT 63
S +K +L+L +K+++++L +E MS++E+ RR + + +S++ KEK L + S T
Sbjct: 7 SERKSRTSLTLNQKLEMIKLSEEG-MSKAEIGRRLGLLRQTVSQVVNAKEKFLKEVKSAT 65
Query: 64 ANRERK-RKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMGQD------ 116
R RKR S + +++ L+ W ++ ++ ++ +KA L + M +
Sbjct: 66 PMNTRMIRKRNSLIADMEKVLVVWIEDQTSRNIPLSQSLIQNKALTLFNSMKAERGVEAA 125
Query: 117 ---FVPSIGWLVRWKRRNNVGFGARHVLAPSFPPEPPPPGLTSQAQLPLSLKDFSPEDVF 173
F S GW +R+K R++ A S E + A++ + ++ + +F
Sbjct: 126 EEKFEASRGWFMRFKERSHFHNIKAQGEAASADVEAAASYPEALAKI-IDEGGYTKQQIF 184
Query: 174 GCAELPLLY-------------RAVPGSFGACDQVQVLLCANSRGTEKRRVLLGGLQAAP 220
E + ++VPG + D++ +LL AN+ G K + +L P
Sbjct: 185 NVDETAFYWKKMPSRTFIAREEKSVPGFKASKDRLTLLLGANAAGDFKLKPMLIYHSENP 244
Query: 221 RCFFGIRSEALPASYHPD-----LGIPWLEWLAQFDRDMGQ---QGRQV---ALLLAARV 269
R LP Y + + W ++ + + +++ LLL
Sbjct: 245 RALKNYTKSTLPVLYKWNSKARMTAHLFTAWFTEYFKPTVETYCSEKKIPFKILLLIDNA 304
Query: 270 VEELAGLPGLY---HVKLLPLAASSTTPPLPSSVVRAFKAHYRHRLLGK-LAAIQSE-RD 324
L +Y +V +P +S P+ V+ FK++Y K LAA+ S+ D
Sbjct: 305 PSHPRALMEIYEEINVIFMPANTTSILQPMDQGVISTFKSYYLRNTFHKALAAMDSDVSD 364
Query: 325 G---TSLAEAGAGITVLDALHVASAAWAKV 351
G + L G T+LDA+ +W +V
Sbjct: 365 GSGQSKLKTFWKGFTILDAIKNIRDSWEEV 394
>gi|239755627 PREDICTED: similar to cag [Homo sapiens]
Length = 392
Score = 50.1 bits (118), Expect = 4e-06
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 6 KKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTAN 65
K+K LS+A+K+++LE LD S +S + + V I + K K+KLL +
Sbjct: 60 KRKHLCLSIAQKVKLLEKLD-SGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQ 118
Query: 66 ---RERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAK----ELADIMGQDFV 118
+ RK ++K +D L W R++ + G +++ +AK EL ++
Sbjct: 119 ILMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEY- 177
Query: 119 PSIGWLVRWKRRNNVGF 135
S GWL ++K+R+ + F
Sbjct: 178 -STGWLQKFKKRHGIKF 193
>gi|239750125 PREDICTED: hypothetical protein XP_002347296 [Homo
sapiens]
Length = 392
Score = 50.1 bits (118), Expect = 4e-06
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 6 KKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTAN 65
K+K LS+A+K+++LE LD S +S + + V I + K K+KLL +
Sbjct: 60 KRKHLCLSIAQKVKLLEKLD-SGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQ 118
Query: 66 ---RERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAK----ELADIMGQDFV 118
+ RK ++K +D L W R++ + G +++ +AK EL ++
Sbjct: 119 ILMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEY- 177
Query: 119 PSIGWLVRWKRRNNVGF 135
S GWL ++K+R+ + F
Sbjct: 178 -STGWLQKFKKRHGIKF 193
>gi|239744433 PREDICTED: hypothetical protein XP_002343159 [Homo
sapiens]
Length = 392
Score = 50.1 bits (118), Expect = 4e-06
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 6 KKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTAN 65
K+K LS+A+K+++LE LD S +S + + V I + K K+KLL +
Sbjct: 60 KRKHLCLSIAQKVKLLEKLD-SGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQ 118
Query: 66 ---RERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAK----ELADIMGQDFV 118
+ RK ++K +D L W R++ + G +++ +AK EL ++
Sbjct: 119 ILMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEY- 177
Query: 119 PSIGWLVRWKRRNNVGF 135
S GWL ++K+R+ + F
Sbjct: 178 -STGWLQKFKKRHGIKF 193
>gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens]
Length = 1123
Score = 34.7 bits (78), Expect = 0.19
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 13/172 (7%)
Query: 2 ELSSKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVS------QPQISRICKNKEKL 55
E +++L AL +++Q L E + + R+ +V Q Q K ++++
Sbjct: 74 EQQLQQELLALKQQQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQQEMLAAKQQQEM 133
Query: 56 LA----DWCSGTANRERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELAD 111
LA RE++R+ E + +++ LL + ++K + + + +E
Sbjct: 134 LAAKRQQELEQQRQREQQRQEELEKQRLEQQLLILRNKEKSKESAIASTEVKLRLQEF-- 191
Query: 112 IMGQDFVPSIGWLVRWKRRNNVGFGARHV-LAPSFPPEPPPPGLTSQAQLPL 162
++ + P+ G L ++ +GA H L S PP+ PPG +LPL
Sbjct: 192 LLSKSKEPTPGGLNHSLPQHPKCWGAHHASLDQSSPPQSGPPGTPPSYKLPL 243
>gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens]
Length = 1122
Score = 34.7 bits (78), Expect = 0.19
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 13/172 (7%)
Query: 2 ELSSKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVS------QPQISRICKNKEKL 55
E +++L AL +++Q L E + + R+ +V Q Q K ++++
Sbjct: 73 EQQLQQELLALKQQQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQQEMLAAKQQQEM 132
Query: 56 LA----DWCSGTANRERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELAD 111
LA RE++R+ E + +++ LL + ++K + + + +E
Sbjct: 133 LAAKRQQELEQQRQREQQRQEELEKQRLEQQLLILRNKEKSKESAIASTEVKLRLQEF-- 190
Query: 112 IMGQDFVPSIGWLVRWKRRNNVGFGARHV-LAPSFPPEPPPPGLTSQAQLPL 162
++ + P+ G L ++ +GA H L S PP+ PPG +LPL
Sbjct: 191 LLSKSKEPTPGGLNHSLPQHPKCWGAHHASLDQSSPPQSGPPGTPPSYKLPL 242
>gi|222080060 Smith-Magenis syndrome chromosome region, candidate 7
isoform 3 [Homo sapiens]
Length = 205
Score = 32.3 bits (72), Expect = 0.95
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 143 PSFPPEPPPPGLTSQAQLPLSLKDFSPEDVFGCAELPLLYRAVPGSFG 190
P P PPP L SQ LPL+ +P + G P + + PG FG
Sbjct: 78 PHLQPRPPPAAL-SQPVLPLAPSSSAPGEAAGLRAGPCDHPSSPGGFG 124
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 31.6 bits (70), Expect = 1.6
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 143 PSFPPEPPPPGLTSQAQLPLSL 164
P PP PPPP Q QLP+SL
Sbjct: 2007 PPPPPPPPPPSAPPQVQLPVSL 2028
>gi|239047414 slingshot 1 isoform 1 [Homo sapiens]
Length = 1049
Score = 31.2 bits (69), Expect = 2.1
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 362 QEGLAPGKTPPSS-HKTSEMPPVPGGLSLEEFSRFVDLEGEEPRSGVCKEEIGTEDEKGD 420
+E L PP+ H+ + P GL ++ + ++ + RSG + TE E+G
Sbjct: 537 REALLEEAAPPAEVHRPARQPQQGSGLCEKDVKKKLEFGSPKGRSGSLLQVEETEREEGL 596
Query: 421 REGAFEPLPTKAD 433
G + LPT+ D
Sbjct: 597 GAGRWGQLPTQLD 609
>gi|239047498 slingshot 1 isoform 3 [Homo sapiens]
Length = 703
Score = 31.2 bits (69), Expect = 2.1
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 362 QEGLAPGKTPPSS-HKTSEMPPVPGGLSLEEFSRFVDLEGEEPRSGVCKEEIGTEDEKGD 420
+E L PP+ H+ + P GL ++ + ++ + RSG + TE E+G
Sbjct: 548 REALLEEAAPPAEVHRPARQPQQGSGLCEKDVKKKLEFGSPKGRSGSLLQVEETEREEGL 607
Query: 421 REGAFEPLPTKAD 433
G + LPT+ D
Sbjct: 608 GAGRWGQLPTQLD 620
>gi|239047441 slingshot 1 isoform 2 [Homo sapiens]
Length = 692
Score = 31.2 bits (69), Expect = 2.1
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 362 QEGLAPGKTPPSS-HKTSEMPPVPGGLSLEEFSRFVDLEGEEPRSGVCKEEIGTEDEKGD 420
+E L PP+ H+ + P GL ++ + ++ + RSG + TE E+G
Sbjct: 537 REALLEEAAPPAEVHRPARQPQQGSGLCEKDVKKKLEFGSPKGRSGSLLQVEETEREEGL 596
Query: 421 REGAFEPLPTKAD 433
G + LPT+ D
Sbjct: 597 GAGRWGQLPTQLD 609
>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
sapiens]
Length = 693
Score = 30.0 bits (66), Expect = 4.7
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 11 ALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTANRERKR 70
ALSL K Q L ++ +M + + A+R + + R+C+ E+L + ER R
Sbjct: 327 ALSLLSKEQKQRLQEQEEMLREQEAQRVREQE----RLCEQNERLREQQKTLQEQGERLR 382
Query: 71 KRESKYSGIDEAL 83
K+E + +E L
Sbjct: 383 KQEQRLRKQEERL 395
>gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens]
Length = 1807
Score = 30.0 bits (66), Expect = 4.7
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 247 LAQFDRDMGQQGRQV---ALLLAARVVEELAGLPGLYHVKLLPLAASSTTPPLP-SSVVR 302
L+ F D+ Q AL+ A R E LY +P A+++ PPLP S+ V
Sbjct: 1216 LSPFSSDINNMPLQELSNALMAAERFKEHRD--TALYKSLSVPAASTAKPPPLPRSNTVA 1273
Query: 303 AFKAHYRHRLLGKLAAIQSERDGTSLAEAGA 333
+F + Y+ G+L S D + E G+
Sbjct: 1274 SFSSLYQSSCQGQLHRSVSWADSAVVMEEGS 1304
>gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C
isoform 1 [Homo sapiens]
Length = 693
Score = 30.0 bits (66), Expect = 4.7
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 11 ALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTANRERKR 70
ALSL K Q L ++ +M + + A+R + + R+C+ E+L + ER R
Sbjct: 327 ALSLLSKEQKQRLQEQEEMLREQEAQRVREQE----RLCEQNERLREQQKTLQEQGERLR 382
Query: 71 KRESKYSGIDEAL 83
K+E + +E L
Sbjct: 383 KQEQRLRKQEERL 395
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 30.0 bits (66), Expect = 4.7
Identities = 50/199 (25%), Positives = 69/199 (34%), Gaps = 44/199 (22%)
Query: 143 PSFPPEPPPPGLTSQAQLPLSLKDFSPEDVFGCAELPLLYRAVPGSFGACDQVQVLLCAN 202
P +PP PPPP L L D L + +P SF Q+Q +
Sbjct: 644 PEYPPPPPPPPHIYDFVNSLELMD----------RLGAQWGGMPMSF----QMQTQMLTR 689
Query: 203 SRGTEKRRVLLGGLQAAPRCFFGIRSEALPASYHPDLGIPWLEWLAQFDRDMGQQGRQVA 262
+ + L+ P FG P G+P+ + GQ+GR
Sbjct: 690 LHQLRQGKGLIAASAGPPGGAFGEAFLPFPPPQEAAYGLPYALYA------QGQEGRGAY 743
Query: 263 LLLAARVVEELAGLPGLYHVKLLPLAASSTTPPLPSSVVRAFKAHYRHRLLGKLAAIQSE 322
A YH+ +P+AA PLPSS V +A R +LA
Sbjct: 744 SREA-------------YHLP-MPMAAE----PLPSSSVSGEEARLPPREEAELA----- 780
Query: 323 RDGTSLAEAGAGITVLDAL 341
+G +L AG VL L
Sbjct: 781 -EGKTLPTAGTVGRVLAML 798
Score = 30.0 bits (66), Expect = 4.7
Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 25/168 (14%)
Query: 282 VKLLPLAASSTTPPLPSSVVRAFKAHYRHRLLGKLAAIQSERDGT----------SLAEA 331
++ LPL +S P V R ++ R G+L + GT +L A
Sbjct: 1207 IRNLPLDHASLVKSWPEEVSRGGRSRAGGR--GRLTEEEEAEPGTEVDLAVLADLALTPA 1264
Query: 332 GAGITVLDALHVASAAWAKVP---PQLIFSSFIQE---GLAPGKTPPS-SHKTSEMPPVP 384
G+ L A+ + A P+ + S + E LA TPP+ + + E P P
Sbjct: 1265 RRGLPALPAVEDSEATETSDEAERPRPLLSHILLEHNYALAVKPTPPAPALRPPEPVPAP 1324
Query: 385 GGL------SLEEFSRFVDLEGEEPRSGVCKEEIGTEDEKGDREGAFE 426
L + E V E EEP+ +++ +E+G+ EG E
Sbjct: 1325 AALFSSPADEVLEAPEVVVAEAEEPKPQQLQQQREEGEEEGEEEGEEE 1372
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 30.0 bits (66), Expect = 4.7
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 18/61 (29%)
Query: 143 PSFPPEPPPPGLTSQAQLPLSL----KDFSPEDVFGCAELP--------LLYRAVPGSFG 190
P PP PPPP Q Q PLS F+P + E+P +Y +PG FG
Sbjct: 1687 PQQPPPPPPP----QQQPPLSQCSMNNSFTPAPMI--MEIPESGSTGNISIYERIPGDFG 1740
Query: 191 A 191
A
Sbjct: 1741 A 1741
>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 30.0 bits (66), Expect = 4.7
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 18/61 (29%)
Query: 143 PSFPPEPPPPGLTSQAQLPLSL----KDFSPEDVFGCAELP--------LLYRAVPGSFG 190
P PP PPPP Q Q PLS F+P + E+P +Y +PG FG
Sbjct: 1687 PQQPPPPPPP----QQQPPLSQCSMNNSFTPAPMI--MEIPESGSTGNISIYERIPGDFG 1740
Query: 191 A 191
A
Sbjct: 1741 A 1741
>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 30.0 bits (66), Expect = 4.7
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 18/61 (29%)
Query: 143 PSFPPEPPPPGLTSQAQLPLSL----KDFSPEDVFGCAELP--------LLYRAVPGSFG 190
P PP PPPP Q Q PLS F+P + E+P +Y +PG FG
Sbjct: 1687 PQQPPPPPPP----QQQPPLSQCSMNNSFTPAPMI--MEIPESGSTGNISIYERIPGDFG 1740
Query: 191 A 191
A
Sbjct: 1741 A 1741
>gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo
sapiens]
Length = 693
Score = 30.0 bits (66), Expect = 4.7
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 11 ALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTANRERKR 70
ALSL K Q L ++ +M + + A+R + + R+C+ E+L + ER R
Sbjct: 327 ALSLLSKEQKQRLQEQEEMLREQEAQRVREQE----RLCEQNERLREQQKTLQEQGERLR 382
Query: 71 KRESKYSGIDEAL 83
K+E + +E L
Sbjct: 383 KQEQRLRKQEERL 395
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 29.6 bits (65), Expect = 6.2
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 382 PVPGGLSLEEFSRFVDLEGEEPRSGVCKEEIGTEDEKGDREGAFEPLPT 430
P PG SL +S F D E C E +E R G PLP+
Sbjct: 232 PSPGSSSLSSWSFFSDASDEAALYAACDEVESELNEAASRFGLGSPLPS 280
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,768,096
Number of Sequences: 37866
Number of extensions: 1071270
Number of successful extensions: 6139
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 6013
Number of HSP's gapped (non-prelim): 115
length of query: 471
length of database: 18,247,518
effective HSP length: 106
effective length of query: 365
effective length of database: 14,233,722
effective search space: 5195308530
effective search space used: 5195308530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.