Guide to the Human Genome
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Name: SSH1 Sequence: fasta or formatted (692aa) NCBI GI: 239047441
Description:

slingshot 1 isoform 2

Referenced in:

Dual-Specificity Phosphatases

Other entries for this name:
alt prot [1049aa] slingshot 1 isoform 1
alt prot [703aa] slingshot 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         45           2
 C cysteine            1.9         13           2
 D aspartate           4.8         33           2
 E glutamate           8.1         56           2
 F phenylalanine       3.3         23           2
 G glycine             6.8         47           2
 H histidine           3.2         22           2
 I isoleucine          3.3         23           1
 K lysine              4.8         33           3
 L leucine            11.0         76           2
 M methionine          2.5         17           2
 N asparagine          4.5         31           3
 P proline             6.1         42           2
 Q glutamine           5.1         35           2
 R arginine            5.6         39           2
 S serine              9.7         67           3
 T threonine           4.2         29           2
 V valine              4.8         33           3
 W tryptophan          1.9         13           1
 Y tyrosine            2.2         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   slingshot 1 isoform 2 
SSH1                  0.952   slingshot 1 isoform 3 
SSH1                  0.904   slingshot 1 isoform 1 
SSH2                  0.470   slingshot 2 
SSH3                  0.299   slingshot homolog 3 
DUSP2                 0.058   dual specificity phosphatase 2 
DUSP9                 0.056   dual specificity phosphatase 9 
DUSP1                 0.055   dual specificity phosphatase 1 
DUSP4                 0.055   dual specificity phosphatase 4 isoform 1 
DUSP4                 0.055   dual specificity phosphatase 4 isoform 2 
DUSP5                 0.055   dual specificity phosphatase 5 
DUSP6                 0.054   dual specificity phosphatase 6 isoform a 
DUSP7                 0.053   dual specificity phosphatase 7 
DUSP10                0.053   dual specificity phosphatase 10 isoform a 
DUSP19                0.049   dual specificity phosphatase 19 isoform 1 
DUSP8                 0.049   dual specificity phosphatase 8 
DUSP14                0.048   dual specificity phosphatase 14 
DUSP16                0.047   dual specificity phosphatase 16 
DUSP10                0.044   dual specificity phosphatase 10 isoform b 
DUSP10                0.044   dual specificity phosphatase 10 isoform b 
DUSP28                0.042   dual specificity phosphatase 28 
DUSP22                0.042   dual specificity phosphatase 22 
LOC100290651          0.040   PREDICTED: hypothetical protein XP_002347464 
STYX                  0.040   serine/threonine/tyrosine interacting protein [Homo...
STYX                  0.040   serine/threonine/tyrosine interacting protein 
DUSP26                0.036   dual specificity phosphatase 26 
DUPD1                 0.035   dual specificity phosphatase and pro isomerase domai...
DUSP15                0.035   dual specificity phosphatase 15 isoform a 
DUSP18                0.033   dual specificity phosphatase 18 
DUSP21                0.031   dual specificity phosphatase 21 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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