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Search of human proteins with 23308563
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23308563 hypothetical protein LOC221301 [Homo sapiens]
(128 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23308563 hypothetical protein LOC221301 [Homo sapiens] 271 8e-74
gi|21361521 calcium homeostasis modulator 2 [Homo sapiens] 67 4e-12
gi|62988336 hypothetical protein LOC441168 [Homo sapiens] 58 2e-09
gi|24308454 hypothetical protein LOC254228 [Homo sapiens] 46 9e-06
gi|194440685 calcium homeostasis modulator 1 [Homo sapiens] 43 8e-05
gi|193211395 calcium homeostasis modulator 3 [Homo sapiens] 43 8e-05
gi|38490587 keratin associated protein 10-12 [Homo sapiens] 28 2.6
gi|55749742 HEAT repeat containing 5B [Homo sapiens] 27 3.3
gi|62988328 ankyrin repeat domain 50 [Homo sapiens] 27 3.3
gi|238231397 coiled-coil domain containing 12 [Homo sapiens] 27 5.7
gi|226371669 discs large homolog 7 isoform b [Homo sapiens] 27 5.7
gi|226371667 discs large homolog 7 isoform a [Homo sapiens] 27 5.7
gi|15082228 keratin associated protein 4-2 [Homo sapiens] 26 7.4
gi|60593036 keratin associated protein 5-3 [Homo sapiens] 26 7.4
gi|154146260 keratin associated protein 4-3 [Homo sapiens] 26 7.4
gi|61742823 disrupted in schizophrenia 1 isoform L [Homo sapiens] 26 9.7
gi|239758034 PREDICTED: keratin associated protein 4-8 isoform 3... 26 9.7
gi|239758032 PREDICTED: keratin associated protein 4-8 isoform 2... 26 9.7
gi|239758030 PREDICTED: keratin associated protein 4-8 isoform 1... 26 9.7
gi|239756798 PREDICTED: similar to keratin associated protein 4-... 26 9.7
gi|239756796 PREDICTED: similar to keratin associated protein 4-... 26 9.7
gi|239756794 PREDICTED: similar to keratin associated protein 4-... 26 9.7
gi|239751306 PREDICTED: keratin associated protein 4-8 [Homo sap... 26 9.7
gi|239745805 PREDICTED: keratin associated protein 4.8 [Homo sap... 26 9.7
gi|225690554 keratin associated protein 4.8 [Homo sapiens] 26 9.7
gi|4826948 protein kinase, X-linked [Homo sapiens] 26 9.7
gi|60279697 keratin associated protein 5-7 [Homo sapiens] 26 9.7
gi|123702038 keratin associated protein 5-9 [Homo sapiens] 26 9.7
gi|60593038 keratin associated protein 5-4 [Homo sapiens] 26 9.7
>gi|23308563 hypothetical protein LOC221301 [Homo sapiens]
Length = 128
Score = 271 bits (694), Expect = 8e-74
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MLGWILITLATIAALVSCCVAKCCSPLTSLQHCYWTSHLQNERELFEQAAEQHSRLLMMH 60
MLGWILITLATIAALVSCCVAKCCSPLTSLQHCYWTSHLQNERELFEQAAEQHSRLLMMH
Sbjct: 1 MLGWILITLATIAALVSCCVAKCCSPLTSLQHCYWTSHLQNERELFEQAAEQHSRLLMMH 60
Query: 61 RIKKLFGFIPGSEDVKHIRIPSCQDWKDISVPTLLCMGDDLQGHYSFLGNRVDEDNEEDR 120
RIKKLFGFIPGSEDVKHIRIPSCQDWKDISVPTLLCMGDDLQGHYSFLGNRVDEDNEEDR
Sbjct: 61 RIKKLFGFIPGSEDVKHIRIPSCQDWKDISVPTLLCMGDDLQGHYSFLGNRVDEDNEEDR 120
Query: 121 SRGIELKP 128
SRGIELKP
Sbjct: 121 SRGIELKP 128
>gi|21361521 calcium homeostasis modulator 2 [Homo sapiens]
Length = 323
Score = 67.0 bits (162), Expect = 4e-12
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 1 MLGWILITLATIAALVSCCVAKCCSPLTSLQHCYWTSHLQNERELFEQAAEQHSRLLMMH 60
+ GW+LI + I ++ C+ CSPL+ Q YW + NE +LF++ AE HSR+L +
Sbjct: 186 LFGWLLIGVVAILVFLTKCLKHYCSPLSYRQEAYWAQYRANEDQLFQRTAEVHSRVLAAN 245
Query: 61 RIKKLFGFIPGSED 74
+++ FGF+ ++D
Sbjct: 246 NVRRFFGFVALNKD 259
>gi|62988336 hypothetical protein LOC441168 [Homo sapiens]
Length = 315
Score = 57.8 bits (138), Expect = 2e-09
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 1 MLGWILITLATIAALVSCCVAKCCSPLTSLQHCYWTSHLQNERELFEQAAEQHSRLLMMH 60
+LGWILI + I L+ V +C SP++ LQ +W +L+ E+++ + A +H+ L
Sbjct: 176 VLGWILIAVVIIILLIFTSVTRCLSPVSFLQLKFWKIYLEQEQQILKSKATEHATELAKE 235
Query: 61 RIKKLFGFIPGSEDVKHIRIPSCQDWKDIS 90
IK F GS K PS ++W+ IS
Sbjct: 236 NIK---CFFEGSHP-KEYNTPSMKEWQQIS 261
>gi|24308454 hypothetical protein LOC254228 [Homo sapiens]
Length = 309
Score = 45.8 bits (107), Expect = 9e-06
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 1 MLGWILITLATIAALVSCCVAKCCSPLTSLQHCYWTSHLQNERELFEQAAEQHSRLLMMH 60
+LGW LI A+ +L++ C A+C S ++ LQ +W ++ Q E+E E ++ L
Sbjct: 181 ILGWCLICSASFFSLLTTCYARCRSKVSYLQLSFWKTYAQKEKEQLENTFLDYANKLSER 240
Query: 61 RIKKLFGFIPGSEDVKHIRIPSCQDWKDISVPTLLCMGDDLQGHYSFLGNRVDEDNEEDR 120
+K F ++ +P+ W+ S L Q HYS L VD
Sbjct: 241 NLKCFF----ENKRPDPFPMPTFAAWEAASE---LHSFHQSQQHYSTLHRVVD------- 286
Query: 121 SRGIELKP 128
G++L P
Sbjct: 287 -NGLQLSP 293
>gi|194440685 calcium homeostasis modulator 1 [Homo sapiens]
Length = 346
Score = 42.7 bits (99), Expect = 8e-05
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 2 LGWILITLATIAALVSCCVAKCCSPLTSLQHCYWTSHLQNERELFEQAAEQHSRLLMMHR 61
LGW + L T+ A V V C + L+ YW+ ++ ER+LF++ +H++
Sbjct: 187 LGWSFVLLTTLLAFVVRSVRPCFTQAAFLKSKYWSHYIDIERKLFDETCTEHAKAFAKVC 246
Query: 62 IKKLF 66
I++ F
Sbjct: 247 IQQFF 251
>gi|193211395 calcium homeostasis modulator 3 [Homo sapiens]
Length = 344
Score = 42.7 bits (99), Expect = 8e-05
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 2 LGWILITLATIAALVSCCVAKCCSPLTSLQHCYWTSHLQNERELFEQAAEQHSR 55
+GW + L IAA ++ C+ C LQ YW++++ E++LF++ +H+R
Sbjct: 183 IGWSVTLLLIIAAFLARCLRPCFDQTVFLQRRYWSNYVDLEQKLFDETCCEHAR 236
>gi|38490587 keratin associated protein 10-12 [Homo sapiens]
Length = 245
Score = 27.7 bits (60), Expect = 2.6
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 17 SCCVAKCCSPLTSLQHCYWTSHLQNERELFEQAAEQHSRLLMMHRIKKLFGFIPGSEDVK 76
SCCV CC P+ + C S L ++ + A S + L P +
Sbjct: 150 SCCVPVCCKPICCVPVCSGASSLCCQQSSCQPACCTTSCCRPSSSVSLLCR--PVCRPAR 207
Query: 77 HIRIPSCQDWKDISVPTLLC 96
+ +PSC VPT C
Sbjct: 208 RVPVPSC------CVPTSSC 221
>gi|55749742 HEAT repeat containing 5B [Homo sapiens]
Length = 2071
Score = 27.3 bits (59), Expect = 3.3
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 16 VSCCVAKCCSPLTSLQHCYWTSHLQNERELFEQAAEQHSRLLMMHRIKKLFGFI 69
V C VAKC L + WT+ L+N L +A E +S + + KL G +
Sbjct: 193 VRCAVAKCLLELQNEAVFMWTAELENIATLCFKALE-NSNYGVRVAVSKLLGTV 245
>gi|62988328 ankyrin repeat domain 50 [Homo sapiens]
Length = 1429
Score = 27.3 bits (59), Expect = 3.3
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 20 VAKCCSPLT--SLQHCYWTSHLQNERELFEQAAEQHSRLLM--MHRIKKLF--GFIPGSE 73
+ C PLT L H WT ++ E F++ + S+LL+ + K LF F
Sbjct: 357 ILAACRPLTITELYHAVWTKNMSLTLEDFQRKLDILSKLLVDGLGNTKILFHYSFAEWLL 416
Query: 74 DVKH 77
DVKH
Sbjct: 417 DVKH 420
>gi|238231397 coiled-coil domain containing 12 [Homo sapiens]
Length = 179
Score = 26.6 bits (57), Expect = 5.7
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 11/49 (22%)
Query: 36 TSHLQNERELFEQAAEQHSRLLMMHRIKKLFGFIPGSEDVKHIRIPSCQ 84
T HL+ E E E+ HR +L ++P ED+K R+P +
Sbjct: 54 TKHLREEEEEGEK-----------HRELRLRNYVPEDEDLKKRRVPQAK 91
>gi|226371669 discs large homolog 7 isoform b [Homo sapiens]
Length = 842
Score = 26.6 bits (57), Expect = 5.7
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 32 HCY-WTSHLQ-----NERELFEQAAEQHSRLLMMHRIKKLFGFIPGSEDVKHIRIPSCQD 85
HC+ W L+ + ++L A Q +RLLM R K+ G + E + I+ +C D
Sbjct: 447 HCFEWDRKLELDIPDDAKDLIRTAVGQ-TRLLMKERFKQFEGLVDDCEYKRGIKETTCTD 505
>gi|226371667 discs large homolog 7 isoform a [Homo sapiens]
Length = 846
Score = 26.6 bits (57), Expect = 5.7
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 32 HCY-WTSHLQ-----NERELFEQAAEQHSRLLMMHRIKKLFGFIPGSEDVKHIRIPSCQD 85
HC+ W L+ + ++L A Q +RLLM R K+ G + E + I+ +C D
Sbjct: 447 HCFEWDRKLELDIPDDAKDLIRTAVGQ-TRLLMKERFKQFEGLVDDCEYKRGIKETTCTD 505
>gi|15082228 keratin associated protein 4-2 [Homo sapiens]
Length = 136
Score = 26.2 bits (56), Expect = 7.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 17 SCCVAKCCSPLTSLQHC 33
SCCV+ CC P S C
Sbjct: 119 SCCVSTCCRPTCSSGSC 135
>gi|60593036 keratin associated protein 5-3 [Homo sapiens]
Length = 238
Score = 26.2 bits (56), Expect = 7.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 17 SCCVAKCCSPLTSLQHC 33
SCC + CC P +S C
Sbjct: 212 SCCQSSCCKPCSSQSSC 228
>gi|154146260 keratin associated protein 4-3 [Homo sapiens]
Length = 195
Score = 26.2 bits (56), Expect = 7.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 17 SCCVAKCCSPLTSLQHC 33
SCC++ CC P + C
Sbjct: 43 SCCISSCCRPSCCISSC 59
Score = 26.2 bits (56), Expect = 7.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 17 SCCVAKCCSPLTSLQHC 33
SCC++ CC P + C
Sbjct: 73 SCCISSCCRPSCCISSC 89
Score = 26.2 bits (56), Expect = 7.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 17 SCCVAKCCSPLTSLQHC 33
SCC++ CC P + C
Sbjct: 103 SCCISSCCRPSCCISSC 119
Score = 26.2 bits (56), Expect = 7.4
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 17 SCCVAKCCSPLTSLQHCY 34
SCC CC P + CY
Sbjct: 123 SCCQTTCCRPSCCISSCY 140
>gi|61742823 disrupted in schizophrenia 1 isoform L [Homo sapiens]
Length = 854
Score = 25.8 bits (55), Expect = 9.7
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 22 KCCSPLTSLQHCYWTSHLQNERELFEQAAEQHSRLLMMHRIKKLFGFIPG---------- 71
K CS L W + L+ R L + Q +R + ++ + G
Sbjct: 678 KLCSCKCPLLGKVWEADLEACRLLIQSLQLQEARGSLSVEDERQMDDLEGAAPPIPPRLH 737
Query: 72 SEDVKHIRIPSCQDWKDISVPTLLCMGDDLQGHYSFLGNRVDEDNEE 118
SED + + ++WK +P+L C G + + L + E E+
Sbjct: 738 SEDKRKTPLKVLEEWKTHLIPSLHCAGGEQKEESYILSAELGEKCED 784
>gi|239758034 PREDICTED: keratin associated protein 4-8 isoform 3
[Homo sapiens]
Length = 204
Score = 25.8 bits (55), Expect = 9.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 17 SCCVAKCCSPLTSLQHC 33
SCC++ CC P + C
Sbjct: 77 SCCISSCCRPSCCVSSC 93
>gi|239758032 PREDICTED: keratin associated protein 4-8 isoform 2
[Homo sapiens]
Length = 193
Score = 25.8 bits (55), Expect = 9.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 17 SCCVAKCCSPLTSLQHC 33
SCC++ CC P + C
Sbjct: 66 SCCISSCCRPSCCVSSC 82
>gi|239758030 PREDICTED: keratin associated protein 4-8 isoform 1
[Homo sapiens]
Length = 220
Score = 25.8 bits (55), Expect = 9.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 17 SCCVAKCCSPLTSLQHC 33
SCC++ CC P + C
Sbjct: 93 SCCISSCCRPSCCVSSC 109
>gi|239756798 PREDICTED: similar to keratin associated protein
4-12 isoform 3 [Homo sapiens]
Length = 204
Score = 25.8 bits (55), Expect = 9.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 17 SCCVAKCCSPLTSLQHC 33
SCC++ CC P + C
Sbjct: 77 SCCISSCCRPSCCVSSC 93
>gi|239756796 PREDICTED: similar to keratin associated protein
4-12 isoform 2 [Homo sapiens]
Length = 193
Score = 25.8 bits (55), Expect = 9.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 17 SCCVAKCCSPLTSLQHC 33
SCC++ CC P + C
Sbjct: 66 SCCISSCCRPSCCVSSC 82
>gi|239756794 PREDICTED: similar to keratin associated protein 4-12
isoform 1 [Homo sapiens]
Length = 220
Score = 25.8 bits (55), Expect = 9.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 17 SCCVAKCCSPLTSLQHC 33
SCC++ CC P + C
Sbjct: 93 SCCISSCCRPSCCVSSC 109
>gi|239751306 PREDICTED: keratin associated protein 4-8 [Homo
sapiens]
Length = 195
Score = 25.8 bits (55), Expect = 9.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 17 SCCVAKCCSPLTSLQHC 33
SCC++ CC P + C
Sbjct: 103 SCCISSCCRPSCCVSSC 119
>gi|239745805 PREDICTED: keratin associated protein 4.8 [Homo
sapiens]
Length = 185
Score = 25.8 bits (55), Expect = 9.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 17 SCCVAKCCSPLTSLQHC 33
SCC++ CC P + C
Sbjct: 93 SCCISSCCRPSCCVSSC 109
>gi|225690554 keratin associated protein 4.8 [Homo sapiens]
Length = 185
Score = 25.8 bits (55), Expect = 9.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 17 SCCVAKCCSPLTSLQHC 33
SCC++ CC P + C
Sbjct: 93 SCCISSCCRPSCCVSSC 109
>gi|4826948 protein kinase, X-linked [Homo sapiens]
Length = 358
Score = 25.8 bits (55), Expect = 9.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 55 RLLMMHRIKKLFGFIPGSEDVKHIRIPSCQDWKDI 89
+LL++ R ++L G+ DVKH R DW+ +
Sbjct: 277 KLLVVDRTRRLGNMKNGANDVKHHRWFRSVDWEAV 311
>gi|60279697 keratin associated protein 5-7 [Homo sapiens]
Length = 165
Score = 25.8 bits (55), Expect = 9.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 17 SCCVAKCCSPLTSLQHC 33
SCC + CC+P S C
Sbjct: 139 SCCQSSCCNPCCSQSSC 155
>gi|123702038 keratin associated protein 5-9 [Homo sapiens]
Length = 169
Score = 25.8 bits (55), Expect = 9.7
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 17 SCCVAKCCSPLTSLQHC 33
SCC + CC P S C
Sbjct: 143 SCCQSSCCKPCCSQSRC 159
>gi|60593038 keratin associated protein 5-4 [Homo sapiens]
Length = 288
Score = 25.8 bits (55), Expect = 9.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 17 SCCVAKCCSPLTSLQHC 33
SCC + CC+P S C
Sbjct: 262 SCCQSSCCNPCCSQSSC 278
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.138 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,131,316
Number of Sequences: 37866
Number of extensions: 209308
Number of successful extensions: 1216
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1015
Number of HSP's gapped (non-prelim): 205
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.