Guide to the Human Genome
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Name: CALHM2 Sequence: fasta or formatted (323aa) NCBI GI: 21361521
Description:

calcium homeostasis modulator 2

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         36           2
 C cysteine            2.5          8           1
 D aspartate           2.5          8           2
 E glutamate           6.2         20           2
 F phenylalanine       6.2         20           2
 G glycine             5.3         17           1
 H histidine           2.5          8           1
 I isoleucine          4.3         14           2
 K lysine              2.5          8           1
 L leucine            12.7         41           3
 M methionine          0.9          3           1
 N asparagine          5.6         18           2
 P proline             5.0         16           1
 Q glutamine           3.4         11           1
 R arginine            6.5         21           2
 S serine              6.8         22           2
 T threonine           3.4         11           1
 V valine              7.4         24           2
 W tryptophan          1.9          6           1
 Y tyrosine            3.4         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium homeostasis modulator 2 
FAM26F                0.181   hypothetical protein LOC441168 
CALHM3                0.167   calcium homeostasis modulator 3 
CALHM1                0.159   calcium homeostasis modulator 1 
FAM26E                0.154   hypothetical protein LOC254228 
FAM26D                0.067   hypothetical protein LOC221301 
CHSY1                 0.008   chondroitin sulfate synthase 1 
EPPK1                 0.008   epiplakin 1 
AZIN1                 0.008   ornithine decarboxylase antizyme inhibitor 
AZIN1                 0.008   ornithine decarboxylase antizyme inhibitor 
SCN5A                 0.006   voltage-gated sodium channel type V alpha isoform f...
SCN5A                 0.006   voltage-gated sodium channel type V alpha isoform e...
SCN5A                 0.006   voltage-gated sodium channel type V alpha isoform a ...
SCN5A                 0.006   voltage-gated sodium channel type V alpha isoform b ...
SCN5A                 0.006   voltage-gated sodium channel type V alpha isoform c...
LOC100294386          0.006   PREDICTED: similar to sodium channel, voltage-gated...
GLG1                  0.005   golgi apparatus protein 1 isoform 3 
GLG1                  0.005   golgi apparatus protein 1 isoform 2 
GLG1                  0.005   golgi apparatus protein 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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